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1.
PLoS Biol ; 19(4): e3001153, 2021 04.
Article in English | MEDLINE | ID: mdl-33891583

ABSTRACT

Mitochondrial DNA (mtDNA) and plastid DNA (ptDNA) encode vital bioenergetic apparatus, and mutations in these organelle DNA (oDNA) molecules can be devastating. In the germline of several animals, a genetic "bottleneck" increases cell-to-cell variance in mtDNA heteroplasmy, allowing purifying selection to act to maintain low proportions of mutant mtDNA. However, most eukaryotes do not sequester a germline early in development, and even the animal bottleneck remains poorly understood. How then do eukaryotic organelles avoid Muller's ratchet-the gradual buildup of deleterious oDNA mutations? Here, we construct a comprehensive and predictive genetic model, quantitatively describing how different mechanisms segregate and decrease oDNA damage across eukaryotes. We apply this comprehensive theory to characterise the animal bottleneck with recent single-cell observations in diverse mouse models. Further, we show that gene conversion is a particularly powerful mechanism to increase beneficial cell-to-cell variance without depleting oDNA copy number, explaining the benefit of observed oDNA recombination in diverse organisms which do not sequester animal-like germlines (for example, sponges, corals, fungi, and plants). Genomic, transcriptomic, and structural datasets across eukaryotes support this mechanism for generating beneficial variance without a germline bottleneck. This framework explains puzzling oDNA differences across taxa, suggesting how Muller's ratchet is avoided in different eukaryotes.


Subject(s)
Eukaryota/genetics , Germ Cells/metabolism , Mutation/physiology , Organelles/genetics , Animals , Arabidopsis , DNA, Mitochondrial/genetics , Drosophila , Eukaryota/classification , Gene Expression Regulation, Developmental , Genetic Speciation , Germ-Line Mutation/physiology , Humans , Mice , Mitochondria/genetics , Mitochondrial Dynamics/genetics , Models, Genetic , Mutagenesis/physiology , Mutation Rate , Organelle Biogenesis , Organelles/physiology
2.
Cancer Res ; 81(7): 1667-1680, 2021 04 01.
Article in English | MEDLINE | ID: mdl-33558336

ABSTRACT

Insights into oncogenesis derived from cancer susceptibility loci (SNP) hold the potential to facilitate better cancer management and treatment through precision oncology. However, therapeutic insights have thus far been limited by our current lack of understanding regarding both interactions of these loci with somatic cancer driver mutations and their influence on tumorigenesis. For example, although both germline and somatic genetic variation to the p53 tumor suppressor pathway are known to promote tumorigenesis, little is known about the extent to which such variants cooperate to alter pathway activity. Here we hypothesize that cancer risk-associated germline variants interact with somatic TP53 mutational status to modify cancer risk, progression, and response to therapy. Focusing on a cancer risk SNP (rs78378222) with a well-documented ability to directly influence p53 activity as well as integration of germline datasets relating to cancer susceptibility with tumor data capturing somatically-acquired genetic variation provided supportive evidence for this hypothesis. Integration of germline and somatic genetic data enabled identification of a novel entry point for therapeutic manipulation of p53 activities. A cluster of cancer risk SNPs resulted in increased expression of prosurvival p53 target gene KITLG and attenuation of p53-mediated responses to genotoxic therapies, which were reversed by pharmacologic inhibition of the prosurvival c-KIT signal. Together, our results offer evidence of how cancer susceptibility SNPs can interact with cancer driver genes to affect cancer progression and identify novel combinatorial therapies. SIGNIFICANCE: These results offer evidence of how cancer susceptibility SNPs can interact with cancer driver genes to affect cancer progression and present novel therapeutic targets.


Subject(s)
Drug Resistance, Neoplasm/genetics , Neoplasms/genetics , Neoplasms/pathology , Tumor Suppressor Protein p53/genetics , Animals , Antineoplastic Agents/therapeutic use , Biomarkers, Pharmacological/metabolism , Carcinogenesis/genetics , Case-Control Studies , Cell Line, Tumor , Disease Progression , Female , Genetic Predisposition to Disease , Genome-Wide Association Study , Germ-Line Mutation/physiology , Humans , Male , Mice , Mice, Inbred BALB C , Mice, Nude , Mutation, Missense , Neoplasms/diagnosis , Neoplasms/drug therapy , Polymorphism, Single Nucleotide/physiology , Prognosis , Risk Factors , Signal Transduction/genetics , Treatment Outcome
3.
Acta Neuropathol ; 140(6): 907-917, 2020 12.
Article in English | MEDLINE | ID: mdl-32892244

ABSTRACT

Paragangliomas are neuroendocrine tumors of the autonomic nervous system that are variably clinically functional and have a potential for metastasis. Up to 40% occur in the setting of a hereditary syndrome, most commonly due to germline mutations in succinate dehydrogenase (SDHx) genes. Immunohistochemically, paragangliomas are characteristically GATA3-positive and cytokeratin-negative, with loss of SDHB expression in most hereditary cases. In contrast, the rare paragangliomas arising in the cauda equina (CEP) or filum terminale region have been shown to be hormonally silent, clinically indolent, and have variable keratin expression, suggesting these tumors may represent a separate pathologic entity. We retrospectively evaluated 17 CEPs from 11 male and 6 female patients with a median age of 38 years (range 21-82), none with a family history of neuroendocrine neoplasia. Six of the 17 tumors demonstrated prominent gangliocytic or ganglioneuromatous differentiation. By immunohistochemistry, none of the CEPs showed GATA3 positivity or loss of SDHB staining; all 17 CEPs were cytokeratin positive. Genome-wide DNA methylation profiling was performed on 12 of the tumors and compared with publicly available genome-wide DNA methylation data. Clustering analysis showed that CEPs form a distinct epigenetic group, separate from paragangliomas of extraspinal sites, pheochromocytomas, and other neuroendocrine neoplasms. Copy number analysis revealed diploid genomes in the vast majority of CEPs, whereas extraspinal paragangliomas were mostly aneuploid with recurrent trisomy 1q and monosomies of 1p, 3, and 11, none of which were present in the cohort of CEP. Together, these findings indicate that CEPs likely represent a distinct entity. Future genomic studies are needed to further elucidate the molecular pathogenesis of these tumors.


Subject(s)
Cauda Equina/pathology , Central Nervous System Neoplasms/genetics , DNA Copy Number Variations/physiology , DNA Methylation/physiology , Immunohistochemistry , Paraganglioma/pathology , Adult , Aged , Aged, 80 and over , Cauda Equina/metabolism , Female , Germ-Line Mutation/genetics , Germ-Line Mutation/physiology , Humans , Immunohistochemistry/methods , Male , Middle Aged , Paraganglioma/genetics , Young Adult
4.
Best Pract Res Clin Endocrinol Metab ; 34(2): 101418, 2020 03.
Article in English | MEDLINE | ID: mdl-32414619

ABSTRACT

Cushing syndrome (CS) describes the signs and symptoms caused by exogenous or endogenous hypercortisolemia. Endogenous CS is caused by either ACTH-dependent sources (pituitary or ectopic) or ACTH-independent (adrenal) hypercortisolemia. Several genes are currently known to contribute to the pathogenesis of CS. Germline gene defects, such as MEN1, AIP, PRKAR1A and others, often present in patients with pituitary or adrenal involvement as part of a genetic syndrome. Somatic defects in genes, such as USP8, TP53, and others, are also involved in the development of pituitary or adrenal tumors in a large percentage of patients with CS, and give insight in pathways involved in pituitary or adrenal tumorigenesis.


Subject(s)
Cushing Syndrome/genetics , DNA Mutational Analysis , Adrenal Gland Neoplasms/complications , Adrenal Gland Neoplasms/epidemiology , Adrenal Gland Neoplasms/genetics , Carcinogenesis/genetics , Carcinogenesis/pathology , Cushing Syndrome/epidemiology , DNA Mutational Analysis/methods , DNA Mutational Analysis/trends , Genetic Association Studies/methods , Genetic Association Studies/trends , Genetic Predisposition to Disease , Germ-Line Mutation/physiology , Humans , Pituitary Neoplasms/complications , Pituitary Neoplasms/epidemiology , Pituitary Neoplasms/genetics , Signal Transduction/genetics
5.
Annu Rev Pathol ; 15: 51-70, 2020 01 24.
Article in English | MEDLINE | ID: mdl-31977294

ABSTRACT

Our genome is a historic record of successive invasions of mobile genetic elements. Like other eukaryotes, we have evolved mechanisms to limit their propagation and minimize the functional impact of new insertions. Although these mechanisms are vitally important, they are imperfect, and a handful of retroelement families remain active in modern humans. This review introduces the intrinsic functions of transposons, the tactics employed in their restraint, and the relevance of this conflict to human pathology. The most straightforward examples of disease-causing transposable elements are germline insertions that disrupt a gene and result in a monogenic disease allele. More enigmatic are the abnormal patterns of transposable element expression in disease states. Changes in transposon regulation and cellular responses to their expression have implicated these sequences in diseases as diverse as cancer, autoimmunity, and neurodegeneration. Distinguishing their epiphenomenal from their pathogenic effects may provide wholly new perspectives on our understanding of disease.


Subject(s)
DNA Transposable Elements/physiology , Disease/genetics , Alleles , Animals , Autoimmunity/genetics , Genome, Human/physiology , Germ-Line Mutation/physiology , Humans , Mutagenesis, Insertional/physiology , Neoplasms/genetics , Neoplasms/pathology , Nerve Degeneration/genetics , Nerve Degeneration/pathology , Retroelements/physiology
6.
Int J Hematol ; 110(5): 584-590, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31428969

ABSTRACT

The aim of this study was to elucidate the role of a non-canonical JAK2 mutation JAK2-T875N, which was identified by exome sequencing in a patient with essential thrombocytosis (ET) who had a family history of suspecting ET. Whole exome sequencing was performed on peripheral blood mononuclear cells and buccal swab-derived genomic DNA. Sanger sequencing was performed to confirm the variant. We evaluated the function of the mutation on JAK2 activity and downstream signaling (Erk, STATs) using JAK2-T875N-transfected or transduced cell lines. 293T cells transfected with JAK2 cDNA carrying V617F or T875N mutations showed increased levels of phosphorylated JAK2 and Erk. Enhanced STAT3 and STAT5 activity was confirmed by promoter assay. JAK2-T875N-transduced Ba/F3 cells showed increased cellular growth without IL-3 stimulation. To our knowledge, this is the first case of ET caused by JAK2-T875N mutation with a family history of thrombocytosis and cerebral infarction.


Subject(s)
Germ-Line Mutation/physiology , Janus Kinase 2/genetics , Thrombocythemia, Essential/genetics , HEK293 Cells , Humans , Janus Kinase 2/metabolism , Medical History Taking , Phosphorylation , STAT3 Transcription Factor/metabolism , STAT5 Transcription Factor/metabolism , Sequence Analysis, DNA , Transfection
7.
Crit Rev Oncol Hematol ; 141: 146-152, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31301542

ABSTRACT

Clinical response to checkpoint inhibitors-based (CPIs) therapies can vary among tumor types and between patients. This led to a significant amount of pre-clinical and clinical research into biomarker identification. Biomarkers have been found to cover both the tumor itself and the tumor microenvironment. Entering host-related parameters into the equation should provide a valuable strategy for identifying not only factors predictive of treatment efficacy but also of treatment-related toxicity. It is clear that germline variants can offer efficient and easily-assessable indicators (blood DNA) to enlarge the spectrum of predictive markers for CPI-based treatment. A major issue concerns the real functional significance of the reported single-nucleotide polymorphisms (SNPs) linked to CPI-treatment outcome. Powered calculations should lead to an optimal trade-off between sample size and allele frequency. New molecular technologies and new analytical methods should provide opportunities to bridge the knowledge gap between SNP-CPI treatment associations and the functional impact of these SNPs.


Subject(s)
Drug Resistance, Neoplasm/genetics , Germ-Line Mutation/physiology , Immunogenetics/methods , Immunotherapy , Neoplasms/diagnosis , Neoplasms/therapy , DNA Mutational Analysis/methods , Drug Resistance, Neoplasm/immunology , Humans , Immunologic Factors/therapeutic use , Immunotherapy/methods , Neoplasms/immunology , Pharmacogenomic Testing/methods , Prognosis , Treatment Outcome , Tumor Microenvironment/genetics , Tumor Microenvironment/immunology
8.
J Transl Med ; 17(1): 181, 2019 05 29.
Article in English | MEDLINE | ID: mdl-31142321

ABSTRACT

BACKGROUND: Melanoma is an aggressive type of skin cancer whose aetiology remains elusive as both environmental and genetic factors can contribute to its development. Recent studies have demonstrated the existence of multiple copies of E2F1 gene in melanoma specimens which could explain the deregulated E2F1 activity in this type of cancer. This finding suggests a key role for this transcription factor in the malignant transformation of melanocytes. Therefore, E2F1 has been considered as a potential therapeutic target for this form of skin cancer. Since germline copy number variations (CNVs) have been associated with increased susceptibility to different types of cancer, the aim of our study was to assess germline E2F1 CNV in melanoma patients. However, CNVs not necessarily lead to gene dosage imbalance, hence, further factors, in association with CNVs, could contribute to clinical manifestations. Considering that heat stress has been hypothesised as a contributing factor to skin cancer, we also investigated the effect of heat stress on E2F1 expression. METHODS: E2F1 CNV was measured in genomic DNA isolated from blood of 552 patients diagnosed with melanoma and 520 healthy subjects using TaqMan Copy Number Assays. E2F1 mRNA expression was also evaluated by RT-qPCR in the melanoma cell line, SK MEL 267, before and after exposure to heat stress. RESULTS: We found that patients diagnosed with melanoma (1.6%, 9/552) harboured frequently altered germline E2F1 copies compared to healthy subjects (0%, 0/520). Moreover, the difference among the two groups was statistically significant (p = 0.004). Furthermore, we found that heat exposure alone can significantly induce E2F1 expression. CONCLUSIONS: This is the first study that shows a relation between germline E2F1 CNV and melanoma, suggesting that altered copies of this gene might be a predisposing factor to skin cancer. Our results also suggest that environmental insults, such as heat stress, could contribute to an aberrant E2F1 activity by inducing E2F1 mRNA expression. Therefore, subjects with multiple constitutive copies of E2F1 are at greater risk of developing melanoma when exposed to heat. Altogether our results corroborate with the hypothesis that susceptibility to melanoma depends on both the environment and genetic factors.


Subject(s)
DNA Copy Number Variations , E2F1 Transcription Factor/genetics , Gene Dosage/physiology , Germ Cells/metabolism , Melanoma/genetics , Skin Neoplasms/genetics , Adult , Aged , Aged, 80 and over , Case-Control Studies , Cells, Cultured , E2F1 Transcription Factor/metabolism , Female , Gene-Environment Interaction , Genetic Predisposition to Disease , Germ-Line Mutation/physiology , Heat-Shock Response/physiology , Humans , Male , Melanocytes/metabolism , Melanocytes/pathology , Melanoma/epidemiology , Melanoma/pathology , Middle Aged , Skin Neoplasms/epidemiology , Skin Neoplasms/pathology
9.
Genes (Basel) ; 10(5)2019 05 14.
Article in English | MEDLINE | ID: mdl-31091831

ABSTRACT

Despite a large body of evidence supporting the role of aberrant DNA methylation in etiology of several human diseases, the fundamental mechanisms that regulate the activity of mammalian DNA methyltransferases (DNMTs) are not fully understood. Recent advances in whole genome association studies have helped identify mutations and genetic alterations of DNMTs in various diseases that have a potential to affect the biological function and activity of these enzymes. Several of these mutations are germline-transmitted and associated with a number of hereditary disorders, which are potentially caused by aberrant DNA methylation patterns in the regulatory compartments of the genome. These hereditary disorders usually cause neurological dysfunction, growth defects, and inherited cancers. Biochemical and biological characterization of DNMT variants can reveal the molecular mechanism of these enzymes and give insights on their specific functions. In this review, we introduce roles and regulation of DNA methylation and DNMTs. We discuss DNMT mutations that are associated with rare diseases, the characterized effects of these mutations on enzyme activity and provide insights on their potential effects based on the known crystal structure of these proteins.


Subject(s)
DNA Modification Methylases/genetics , DNA Modification Methylases/metabolism , Germ-Line Mutation/genetics , Animals , Cerebellar Ataxia/genetics , DNA , DNA (Cytosine-5-)-Methyltransferase 1/genetics , DNA (Cytosine-5-)-Methyltransferase 1/metabolism , DNA (Cytosine-5-)-Methyltransferases/genetics , DNA (Cytosine-5-)-Methyltransferases/metabolism , DNA Methylation , Genome , Germ-Line Mutation/physiology , Hearing Loss, Sensorineural/genetics , Hereditary Sensory and Autonomic Neuropathies/genetics , Humans , Mutation , Narcolepsy/genetics , Structure-Activity Relationship
10.
Cancer ; 125(9): 1441-1448, 2019 05 01.
Article in English | MEDLINE | ID: mdl-30620386

ABSTRACT

BACKGROUND: Ampullary carcinoma (AC) is a rare gastrointestinal cancer. Pathogenic germline alterations (PGAs) in BRCA2 and potentially targetable somatic alterations (SAs) in ERBB2 and ELF3 have been previously described in AC. Memorial Sloan Kettering Cancer Center has implemented an opt-in strategy for germline testing (GT) and somatic testing (ST) for patients with AC to further evaluate the spectrum of PGAs and SAs. METHODS: Forty-five patients with pathologically confirmed AC prospectively consented with the Memorial Sloan Kettering Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT) test (410-468 genes). A subset of the cohort (23 of the 45 patients) also consented to GT with MSK-IMPACT (76-88 genes). Germline data for 21 of the remaining 22 patients who had not consented to GT were obtained in a de-identified fashion without clinical correlation. Clinicopathologic features, treatment histories, and survival data for consenting patients were collected and analyzed. RESULTS: Pancreaticobiliary, intestinal, and mixed features of the 2 types were the primary pathologic subtypes of AC identified in this cohort. No difference in median overall survival was found between pathologic subtypes. Eight of 44 patients (18%) were identified as harboring pathogenic mutations in BRCA2, ATM, RAD50, and MUTYH. In addition, this study found a wide spectrum of SAs in genes such as KRAS, MDM2, ERBB2, ELF3, and PIK3CA. Two patients in the cohort underwent SA-targeted therapy, and 1 had a partial radiographic response. CONCLUSIONS: Mutations in multiple somatic and germline genes were identified in this cohort. Significantly, actionable targets were identified in the tumors, and broader testing for PGAs and SAs should be considered for all patients with AC.


Subject(s)
Ampulla of Vater/pathology , Common Bile Duct Neoplasms/diagnosis , Common Bile Duct Neoplasms/genetics , DNA Mutational Analysis/methods , Aged , Biomarkers, Tumor/genetics , Cohort Studies , Common Bile Duct Neoplasms/mortality , Common Bile Duct Neoplasms/pathology , Female , Genetic Predisposition to Disease , Germ-Line Mutation/physiology , Humans , Male , Microsatellite Repeats/genetics , Middle Aged , Mutation/physiology , Prognosis , Survival Analysis
12.
Clin Endocrinol (Oxf) ; 85(6): 845-851, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27293068

ABSTRACT

BACKGROUND: Germline mutations of the KCNJ5 gene encoding Kir3·4, a member of the inwardly rectifying K+ channel, have been identified in 'normal' adrenal glands, patients with familial hyperaldosteronism (FH) type III, aldosterone-producing adenomas (APAs) and sporadic cases of primary aldosteronism (PA). OBJECTIVE: To present two novel KCNJ5 gene mutations in hypertensive patients without PA, but with Adrenocorticotropic hormone (ACTH)-dependent aldosterone hypersecretion. DESIGN AND PATIENTS: Two hypertensive patients without PA, who exhibited enhanced ACTH-dependent response of aldosterone secretion, underwent genetic testing for the presence of the CYP11B1/CYP11B2 chimeric gene and KCNJ5 gene mutations. Genomic DNA was isolated from peripheral white blood cells, and the exons of the entire coding regions of the above genes were amplified and sequenced. Electrophysiological studies were performed to determine the effect of identified mutation(s) on the membrane reversal potentials. Structural biology studies were also carried out. RESULTS: Two novel germline heterozygous KCNJ5 mutations, p.V259M and p.Y348N, were detected in the two subjects. Electrophysiological studies showed that the Y348N mutation resulted in significantly less negative reversal potentials, suggesting loss of ion selectivity, while the V259M mutation did not affect the Kir3.4 current. In the mutated structural biology model, the N348 mutant resulted in significant loss of the ability for hydrogen bonding, while the M259 mutant was capable of establishing weaker interactions. The CYP11B1/CYP11B2 chimeric gene was not detected. CONCLUSIONS: These findings expand on the clinical spectrum of phenotypes associated with KCNJ5 mutations and implicate these mutations in the pathogenesis of hypertension associated with increased aldosterone response to ACTH stimulation.


Subject(s)
Adrenocorticotropic Hormone/pharmacology , Aldosterone/metabolism , G Protein-Coupled Inwardly-Rectifying Potassium Channels/genetics , Germ-Line Mutation/physiology , Hypertension/etiology , Cytochrome P-450 CYP11B2/genetics , Electrophysiological Phenomena , Female , Genetic Association Studies , Humans , Hyperaldosteronism , Male , Middle Aged , Steroid 11-beta-Hydroxylase/genetics
13.
Dental press j. orthod. (Impr.) ; 20(1): 23-29, Jan-Feb/2015. graf
Article in English | LILACS | ID: lil-741444

ABSTRACT

The use of mini-implants have made a major contribution to orthodontic treatment. Demand has aroused scientific curiosity about implant placement procedures and techniques. However, the reasons for instability have not yet been made totally clear. The aim of this article is to establish a relationship between implant placement technique and mini-implant success rates by means of examining the following hypotheses: 1) Sites of poor alveolar bone and little space between roots lead to inadequate implant placement; 2) Different sites require mini-implants of different sizes! Implant size should respect alveolar bone diameter; 3) Properly determining mini-implant placement site provides ease for implant placement and contributes to stability; 4) The more precise the lancing procedures, the better the implant placement technique; 5) Self-drilling does not mean higher pressures; 6) Knowing where implant placement should end decreases the risk of complications and mini-implant loss.


O uso de mini-implantes trouxe grandes contribuições ao tratamento ortodôntico. Essa demanda gerou curiosidade científica sobre os procedimentos e técnicas de implantação. Entretanto, instabilidades desses dispositivos ocorrem por motivos ainda não totalmente esclarecidos. Objetiva-se, com esse trabalho, relacionar a técnica de implantação com a taxa de sucesso dos mini-implantes por meio das seguintes hipóteses: 1) áreas com osso alveolar pobre e com pouco espaço inter-radicular levam à inadequada implantação; 2) diferentes áreas requerem distintos tamanhos de mini-implantes! O tamanho do implante deve acompanhar o diâmetro do osso alveolar; 3) a correta determinação do local em que será colocado o mini-implante facilita a instalação e contribui para a estabilidade; 4) quanto mais precisa for a lancetagem, melhor será a técnica de implantação; 5) autoperfuração não significa alta pressão; 6) saber onde finalizar a implantação diminui a incidência de complicações e de perda dos mini-implantes.


Subject(s)
Child, Preschool , Female , Humans , Infant , Infant, Newborn , Male , Developmental Disabilities/genetics , Germ-Line Mutation , Leukemia, Myelomonocytic, Juvenile/genetics , Proto-Oncogene Proteins c-cbl/genetics , Cryptorchidism/complications , Cryptorchidism/genetics , DNA Mutational Analysis , Developmental Disabilities/complications , Genetic Predisposition to Disease , Germ-Line Mutation/physiology , Leukemia, Myelomonocytic, Juvenile/complications , Pedigree , Proto-Oncogene Proteins c-cbl/physiology
14.
Dev Cell ; 25(6): 645-54, 2013 Jun 24.
Article in English | MEDLINE | ID: mdl-23806619

ABSTRACT

LEM domain (LEM-D) proteins are components of an extensive protein network that assembles beneath the inner nuclear envelope. Defects in LEM-D proteins cause tissue-restricted human diseases associated with altered stem cell homeostasis. Otefin (Ote) is a Drosophila LEM-D protein that is intrinsically required for female germline stem cell (GSC) maintenance. Previous studies linked Ote loss with transcriptional activation of the key differentiation gene bag-of-marbles (bam), leading to the model in which Ote tethers the bam gene to the nuclear periphery for gene silencing. Using genetic and phenotypic analyses of multiple ote(-/-) backgrounds, we obtained evidence that is inconsistent with this model. We show that bam repression is maintained in ote(-/-) GSCs and that germ cell loss persists in ote(-/-), bam(-/-) mutants, together demonstrating that GSC loss is independent of bam transcription. We show that the primary defect in ote(-/-) GSCs is a block of differentiation, which ultimately leads to germ cell death.


Subject(s)
Drosophila Proteins/genetics , Gene Expression Regulation, Developmental , Germ Cells/physiology , Membrane Proteins/genetics , Nuclear Proteins/genetics , Stem Cells/physiology , Animals , Cell Differentiation/physiology , Drosophila Proteins/metabolism , Drosophila melanogaster , Female , Germ Cells/cytology , Germ-Line Mutation/physiology , Membrane Proteins/metabolism , Nuclear Lamina/genetics , Nuclear Lamina/metabolism , Nuclear Proteins/metabolism , Phenotype , Stem Cells/cytology
15.
Neurosurg Rev ; 36(3): 483-6, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23584803

ABSTRACT

Cerebral cavernous malformations are focal vascular abnormalities that show recurrent intralesional microhemorrhage and may cause focal deficits or seizures in affected patients. These lesions occur in both sporadic and inherited autosomal dominant form. Germline mutations in three different genes have been identified yet. One explanation for the unpredictable individual clinical course with wide variability of the number of developing cerebral cavernous malformations (CCMs) and their rate of progression within CCM families is thought to be based upon a "two-hit" mechanism. However, the direct influence of a heterozygous underlying germline mutation in combination with secondary somatic mutations on a patient's individual clinical course is hard to investigate in vivo. In this context, we present a rare and interesting case of monozygotic twins heterozygous for the CCM1 germline mutation c.730-1G>A and discuss their similar age and type of disease manifestation and their beginning divergent clinical course.


Subject(s)
Germ-Line Mutation/physiology , Hemangioma, Cavernous, Central Nervous System/surgery , Microtubule-Associated Proteins/genetics , Neurosurgical Procedures/methods , Proto-Oncogene Proteins/genetics , DNA/genetics , Electroencephalography , Female , Hemangioma, Cavernous, Central Nervous System/complications , Humans , Introns/genetics , KRIT1 Protein , Pedigree , Seizures/etiology , Twins, Monozygotic , Young Adult
16.
Blood ; 121(20): 4156-65, 2013 May 16.
Article in English | MEDLINE | ID: mdl-23535062

ABSTRACT

The association between somatic JAK2 mutation and myeloproliferative neoplasms (MPNs) is now well established. However, because JAK2 mutations are associated with heterogeneous clinical phenotypes and often occur as secondary genetic events, some aspects of JAK2 mutation biology remain to be understood. We recently described a germline JAK2V617I mutation in a family with hereditary thrombocytosis and herein characterize the hematopoietic and signaling impact of JAK2V617I. Through targeted sequencing of MPN-associated mutations, exome sequencing, and clonality analysis, we demonstrate that JAK2V617I is likely to be the sole driver mutation in JAK2V617I-positive individuals with thrombocytosis. Phenotypic hematopoietic stem cells (HSCs) were increased in the blood and bone marrow of JAK2V617I-positive individuals and were sustained at higher levels than controls after xenotransplantation. In signaling and transcriptional assays, JAK2V617I demonstrated more activity than wild-type JAK2 but substantially less than JAK2V617F. After cytokine stimulation, JAK2V617I resulted in markedly increased downstream signaling compared with wild-type JAK2 and comparable with JAK2V617F. These findings demonstrate that JAK2V617I induces sufficient cytokine hyperresponsiveness in the absence of other molecular events to induce a homogeneous MPN-like phenotype. We also provide evidence that the JAK2V617I mutation may expand the HSC pool, providing insights into both JAK2 mutation biology and MPN disease pathogenesis.


Subject(s)
Germ-Line Mutation/physiology , Hematopoiesis/genetics , Janus Kinase 2/genetics , Adult , Amino Acid Substitution/physiology , Animals , Cells, Cultured , Family , Female , Hematopoiesis/physiology , Humans , Isoleucine/genetics , Male , Mice , Mice, Inbred NOD , Mice, Transgenic , Middle Aged , Myeloproliferative Disorders/genetics , Myeloproliferative Disorders/physiopathology , Valine/genetics
17.
J Pediatr Endocrinol Metab ; 26(1-2): 137-41, 2013.
Article in English | MEDLINE | ID: mdl-23382303

ABSTRACT

Phosphatase and tensin homologue deleted in chromosome 10 (PTEN) has dual protein and lipid phosphatase activity, and its tumor suppressor activity is dependent on its lipid phosphatase activity, which negatively regulates the phosphatidylinositol 3-kinase/Akt pathway. Mutations in PTEN have been identified in different clinical disorders such as Bannayan-Riley-Ruvalcaba syndrome, Cowden syndrome, Proteus syndrome, Proteus-like syndrome, and autism spectrum disorders with macrocephaly (Hobert). The absence of clear genotype-phenotype correlations between these syndromes appears to represent age-related manifestations of the same condition, which shows variable expressivity. Here, we present two siblings whose phenotypes were extremely variable compared with the original descriptions of the syndromes associated with PTEN germline mutations. Our patients present with a unique constellation of features that have not yet been described in humans with PTEN germline mutations, some of which have not been described in the same individual, like severe hypoglycemia, growth hormone deficiency, Von Willebrand disease, and dyslipidemia.


Subject(s)
Blood Coagulation Disorders, Inherited/genetics , Developmental Disabilities/genetics , Germ-Line Mutation , Growth Disorders/genetics , Hypoglycemia/genetics , Megalencephaly/genetics , PTEN Phosphohydrolase/genetics , Blood Coagulation Disorders, Inherited/complications , Body Height/genetics , Child, Preschool , Developmental Disabilities/complications , Dwarfism/genetics , Germ-Line Mutation/physiology , Growth Disorders/congenital , Humans , Hypoglycemia/complications , Hypoglycemia/congenital , Infant , Male , Megalencephaly/complications , Siblings , von Willebrand Diseases/genetics
18.
Gene ; 516(2): 204-8, 2013 Mar 10.
Article in English | MEDLINE | ID: mdl-23291410

ABSTRACT

OBJECTIVE: The aim of the study was to identify the causative gene defects associated with familial adenomatous polyposis (FAP) in two Chinese pedigrees. METHODS: The diagnosis of FAP patients was confirmed by clinical manifestations, family histories, colonoscopy and pathology examinations. Blood samples were collected and genomic DNA was extracted. The mutation analysis of the adenomatous polyposis coli (APC) and human mutY homolog (MUTYH) genes was conducted by direct polymerase chain reaction (PCR) sequencing and multiplex ligation-dependent probe amplification (MLPA). RESULTS: In pedigree A, the results of direct PCR sequencing revealed a heterozygous insertion mutation at codon 610 in exon 15 of APC gene (c.1828_1829insG), which resulted in frameshift change (p.Asp610GlyfsX23) in all 4 patients, but was absent in the unaffected familial members and controls. In pedigree B, we didn't identify that causative mutations cosegregated with the clinical phenotype in the APC and MUTYH genes. CONCLUSIONS: We identified a novel insertion mutation as the pathogenic gene of FAP in Chinese population, which could enrich the germline mutation spectrum of APC gene, and the prophylactic proctocolectomy for the mutation carrier in family should be considered.


Subject(s)
Adenomatous Polyposis Coli/genetics , Asian People/genetics , Genes, APC , Mutagenesis, Insertional/physiology , Adenomatous Polyposis Coli/ethnology , Adolescent , Adult , Asian People/statistics & numerical data , Aspartic Acid/genetics , Base Sequence , Case-Control Studies , DNA Glycosylases/genetics , Family/ethnology , Female , Genetic Predisposition to Disease/ethnology , Germ-Line Mutation/physiology , Glycine/genetics , Humans , Male , Middle Aged , Pedigree , Polymorphism, Single Nucleotide/physiology , Young Adult
19.
J Clin Endocrinol Metab ; 98(1): E119-25, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23175693

ABSTRACT

PURPOSE: Adrenocortical carcinoma (ACC) is a hallmark cancer in families with Li Fraumeni syndrome (LFS) caused by mutations in the TP53 gene. The prevalence of germline TP53 mutations in children diagnosed with ACC ranges from 50-97%. Although existing criteria advocate for TP53 testing in all patients with ACC regardless of age at diagnosis, the overall prevalence of germline mutations in patients diagnosed with ACC has not been well studied. PATIENTS AND METHODS: A total of 114 patients with confirmed ACC evaluated in the University of Michigan Endocrine Oncology Clinic were prospectively offered genetic counseling and TP53 genetic testing, regardless of age at diagnosis or family history. Ninety-four of the 114 patients met with a genetic counselor (82.5%), with 53 of 94 (56.4%) completing TP53 testing; 9.6% (nine of 94) declined testing. The remainder (32 of 94; 34%) expressed interest in testing but did not pursue it for various reasons. RESULTS: Four of 53 patients in this prospective, unselected series were found to have a TP53 mutation (7.5%). The prevalence of mutations in those diagnosed over age 18 was 5.8% (three of 52). There were insufficient data to estimate the prevalence in those diagnosed under age 18. None of these patients met clinical diagnostic criteria for classic LFS. Three of the families met criteria for Li Fraumeni-like syndrome; one patient met no existing clinical criteria for LFS or Li Fraumeni-like syndrome. Three of the four patients with mutations were diagnosed with ACC after age 45. CONCLUSIONS: Genetic counseling and germline testing for TP53 should be offered to all patients with ACC. Restriction on age at diagnosis or strength of the family history would fail to identify mutation carriers.


Subject(s)
Adrenal Cortex Neoplasms/genetics , Adrenocortical Carcinoma/genetics , Genes, p53/genetics , Germ-Line Mutation , Adolescent , Adrenal Cortex Neoplasms/diagnosis , Adrenal Cortex Neoplasms/epidemiology , Adrenocortical Carcinoma/diagnosis , Adrenocortical Carcinoma/epidemiology , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Female , Gene Frequency , Genetic Counseling , Genetic Predisposition to Disease , Germ-Line Mutation/physiology , Humans , Male , Middle Aged , Patient Selection , Prevalence , Prospective Studies , Young Adult
20.
J Clin Endocrinol Metab ; 97(12): E2320-7, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23066114

ABSTRACT

CONTEXT: Thyroid cancer is a major component of Cowden syndrome (CS). CS patients with an underlying PTEN mutation (PTEN(mut+)) have a 70-fold increased risk of developing epithelial thyroid cancer. In contrast, less than 1% of sporadic epithelial thyroid cancer patients carry a germline PTEN mutation. Cost-efficient markers capable of shortlisting thyroid cancers for CS genetic testing would be clinically useful. OBJECTIVE: Our objective was to analyze the utility of patient blood phosphate and tensin homolog deleted on chromosome 10 (PTEN) protein levels in predicting germline PTEN mutations. DESIGN, SETTING, AND PATIENTS: We conducted a 5-yr, multicenter prospective study of 2792 CS and CS-like patients, all of whom had comprehensive PTEN analysis. Analysis of PTEN and downstream proteins by immunoblotting was performed on total protein lysates from patient-derived lymphoblast lines. We compared blood PTEN protein levels between PTEN(mut+) patients and those with variants of unknown significance or wild-type PTEN (PTEN(wt/vus)). MAIN OUTCOME MEASURES: We assessed the utility of PTEN protein levels in predicting germline PTEN mutations. RESULTS: Of 2792 CS/CS-like patients, 721 patients had thyroid cancer; 582 of them (81%) had blood PTEN protein analyzed. PTEN germline pathogenic mutations were present in 27 of 582 patients (4.6%). Ninety-six percent (26 of 27) of PTEN(mut+) patients had blood PTEN protein levels in the lowest quartile as compared with 25% (139 of 555) of PTEN(wt/vus) patients (P < 0.001). Low blood PTEN levels predicted for PTEN(mut+) cases with a 99.76% negative predictive value (95% confidence interval = 98.67-99.96) and a positive test likelihood ratio of 3.84 (95% confidence interval = 3.27-4.52). CONCLUSIONS: Our study shows that low blood PTEN protein expression could serve as a screening molecular correlate to predict for germline PTEN mutation in CS and CS-like presentations of thyroid cancer.


Subject(s)
Adenoma/diagnosis , Germ-Line Mutation , Hamartoma Syndrome, Multiple/diagnosis , Mitochondrial Diseases/diagnosis , PTEN Phosphohydrolase/genetics , PTEN Phosphohydrolase/metabolism , Thyroid Neoplasms/diagnosis , Adenoma/complications , Adenoma/genetics , Adenoma/metabolism , Adolescent , Adult , Diagnosis, Differential , Female , Germ-Line Mutation/physiology , Hamartoma Syndrome, Multiple/complications , Hamartoma Syndrome, Multiple/genetics , Hamartoma Syndrome, Multiple/metabolism , Humans , Male , Middle Aged , Mitochondrial Diseases/complications , Mitochondrial Diseases/genetics , Mitochondrial Diseases/metabolism , PTEN Phosphohydrolase/analysis , PTEN Phosphohydrolase/blood , Phenotype , Predictive Value of Tests , Proteins/analysis , Proteins/metabolism , Sensitivity and Specificity , Thyroid Neoplasms/complications , Thyroid Neoplasms/genetics , Thyroid Neoplasms/metabolism , Young Adult
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