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1.
BMC Plant Biol ; 24(1): 911, 2024 Oct 01.
Article in English | MEDLINE | ID: mdl-39350008

ABSTRACT

BACKGROUND: The ß-1,3-glucanase gene is widely involved in plant development and stress defense. However, an identification and expression analysis of the grape ß-1,3-glucanase gene (VviBG) family had not been conducted prior to this study. RESULTS: Here, 42 VviBGs were identified in grapevine, all of which contain a GH-17 domain and a variable C-terminal domain. VviBGs were divided into three clades α, ß and γ, and six subgroups A-F, with relatively conserved motifs/domains and intron/exon structures within each subgroup. The VviBG gene family contained four tandem repeat gene clusters. There were intra-species synteny relationships between two pairs of VviBGs and inter-species synteny relationships between 20 pairs of VviBGs and AtBGs. The VviBG promoter contained many cis-acting elements related to stress and hormone responses. Tissue-specific analysis showed that VviBGs exhibited distinct spatial and temporal expression patterns. Transcriptome analysis indicated that many VviBGs were induced by wounds, UV, downy mildew, cold, salt and drought, especially eight VviBGs in subgroup A of the γ clade. RT-qPCR analysis showed that these eight VviBGs were induced under abiotic stress (except for VviBG41 under cold stress), and most of them were induced at higher expression levels by PEG6000 and NaCl than under cold treatment. CONCLUSIONS: The chromosome localization, synteny and phylogenetic analysis of the VviBG members were first conducted. The cis-acting elements, transcriptome data and RT-qPCR analysis showed that VviBG genes play a crucial role in grape growth and stress (hormone, biotic and abiotic) responses. Our study laid a foundation for understanding their functions in grape resistance to different stresses.


Subject(s)
Gene Expression Regulation, Plant , Multigene Family , Phylogeny , Stress, Physiological , Vitis , Vitis/genetics , Vitis/enzymology , Stress, Physiological/genetics , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Gene Expression Profiling , Genome, Plant , Synteny
2.
Int J Biol Macromol ; 279(Pt 3): 135349, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39242004

ABSTRACT

ß-1,3-Glucanases are essential enzymes involved in the hydrolysis of ß-1,3-glucans, with significant biological and industrial relevance. These enzymes are derived from diverse sources, including bacteria, fungi, plants, and animals, each exhibiting unique substrate specificities and biochemical properties. This review provides an in-depth analysis of the natural sources and ecological roles of ß-1,3-glucanases, exploring their enzymatic properties such as optimal pH, temperature, molecular weight, isoelectric points, and kinetic parameters, which are crucial for understanding their functionality and stability. Advances in molecular enzymology are discussed, focusing on gene cloning, expression in systems like Escherichia coli and Pichia pastoris, and structural-functional relationships. The reaction mechanisms and the role of non-catalytic carbohydrate-binding modules in enhancing substrate hydrolysis are examined. Industrial applications of ß-1,3-glucanases are highlighted, including the production of ß-1,3-glucooligosaccharides, uses in the food industry, biological control of plant pathogens, and nutritional roles. This review aims to provide a foundation for future research, improving the efficiency and robustness of ß-1,3-glucanases for various industrial applications.


Subject(s)
Glucan 1,3-beta-Glucosidase , Substrate Specificity , Glucan 1,3-beta-Glucosidase/metabolism , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/chemistry , Hydrolysis , beta-Glucans/metabolism , beta-Glucans/chemistry , Animals
3.
Protein Expr Purif ; 224: 106563, 2024 Dec.
Article in English | MEDLINE | ID: mdl-39122061

ABSTRACT

ß-1,3-glucanases can degrade ß-1,3-glucoside bonds in ß-glucan which is the main cell-wall component of most of fungi, and have the crucial application potential in plant protection and food processing. Herein, a ß-1,3-glucanase FlGluA from Flavobacterium sp. NAU1659 composed of 333 amino acids with a predicted molecular mass of 36.6 kDa was expressed in Escherichia coli BL21, purified and characterized. The deduced amino acid sequence of FlGluA showed the high identity with the ß-1,3-glucanase belonging to glycoside hydrolase (GH) family 16. Enzymological characterization indicated FlGluA had the highest activity on zymosan A, with a specific activity of 3.87 U/mg, followed by curdlan (1.16 U/mg) and pachymaran (0.88 U/mg). It exhibited optimal catalytic activity at the pH 5.0 and 40 °C, and was stable when placed at 4 °C for 12 h in the range of pH 3.0-8.0 or at a temperature below 50 °C for 3 h. Its catalytic activity was enhanced by approximately 36 % in the presence of 1 mM Cr3+. The detection of thin-layer chromatography and mass spectrometry showed FlGluA hydrolyzed zymosan A mainly to glucose and disaccharide, and trace amounts of tetrasaccharide and pentasaccharide, however, it had no action on laminaribiose, indicating its endo-ß-1,3-glucanase activity. The mycelium growth of F. oxysporum treated by FlGluA was inhibited, with approximately 37 % of inhibition rate, revealing the potential antifungal activity of the enzyme. These results revealed the hydrolytic properties and biocontrol activity of FlGluA, laying a crucial foundation for its potential application in agriculture and industry.


Subject(s)
Antifungal Agents , Flavobacterium , Glucan 1,3-beta-Glucosidase , Recombinant Proteins , Flavobacterium/genetics , Flavobacterium/enzymology , Recombinant Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/pharmacology , Recombinant Proteins/metabolism , Antifungal Agents/pharmacology , Antifungal Agents/chemistry , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/chemistry , Glucan 1,3-beta-Glucosidase/metabolism , Fusarium/drug effects , Fusarium/enzymology , Fusarium/genetics , Bacterial Proteins/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Bacterial Proteins/isolation & purification , Escherichia coli/genetics , Substrate Specificity , Cloning, Molecular
4.
Plant J ; 120(1): 289-301, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39154347

ABSTRACT

Seeds are initiated from the carpel margin meristem (CMM) and high seed yield is top one of breeding objectives for many crops. ß-1,3-glucanases play various roles in plant growth and developmental processes; however, whether it participates in CMM development and seed formation remains largely unknown. Here, we identified a ß-1,3-glucanase gene (GLU19) as a determinant of CMM callose deposition and seed yield in cotton. GLU19 was differentially expressed in carpel tissues between Gossypium barbadense (Gb) and Gossypium hirsutum (Gh). Based on resequencing data, one interspecies-specific InDel in the promoter of GLU19 was further detected. The InDel was involved in the binding site of the CRABS CLAW (CRC) transcription factor, a regulator of carpel development. We found that the CRC binding affinity to the GLU19 promoter of G. barbadense was higher than that of G. hirsutum. Since G. barbadense yields fewer seeds than G. hirsutum, we speculated that stronger CRC binding to the GLU19 promoter activated higher expression of GLU19 which in turn suppressed seed production. Consistent with this hypothesis was that the overexpression of GhGLU19 caused reduced seed number, boll weight and less callose formation in CMM. Conversely, GhGLU19-knockdown (GhGLU19-KD) cotton led to the opposite phenotypes. By crossing GhGLU19-KD lines with several G. hirsutum and G. barbadense cotton accessions, all F1 and F2 plants carrying GhGLU19-KD transgenic loci exhibited higher seed yield than control plants without the locus. The increased seed effect was also found in the down-regulation of Arabidopsis orthologs lines, indicating that this engineering strategy may improve the seed yield in other crops.


Subject(s)
Gene Expression Regulation, Plant , Glucan 1,3-beta-Glucosidase , Gossypium , Plant Proteins , Seeds , Gossypium/genetics , Gossypium/growth & development , Gossypium/enzymology , Seeds/genetics , Seeds/growth & development , Seeds/metabolism , Glucan 1,3-beta-Glucosidase/metabolism , Glucan 1,3-beta-Glucosidase/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified , Promoter Regions, Genetic/genetics , Cotton Fiber , Glucans/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism
5.
Plant Sci ; 347: 112179, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39004407

ABSTRACT

Ethylene response factor (ERF) is a class of plant-specific transcription factors that play an important role in plant growth, development, and stress response. However, the underlying mechanism of strawberry ERFs in pathogenic responses against Botrytis cinerea (B. cinerea) remains largely unclear. In this study, we isolated FaERF2, a nucleus-localized ERF transcription factor from Fragaria x ananassa. Transiently overexpressing FaERF2 in strawberry fruits significantly enhances their resistant ability to B. cinerea, while silencing FaERF2 in strawberry fruits enhances their susceptibility to B. cinerea. In addition, we found that FaERF2 could directly bind to the cis-acting element GCC box in the promoters of two ß-1,3-glucanase genes, FaBG-1 and FaBG-2, and activate their expression. Finally, both strawberry fruits transient expression followed by B. cinerea inoculation assays and recombinant protein incubation tests collectively substantiated the inhibitory effect of FaBG-1 and FaBG-2 on B. cinerea mycelium growth. These results revealed the molecular regulation mechanism of FaERF2 in response to B. cinerea and laid foundations for creating disease-resistance strawberry cultivar through genome editing approach.


Subject(s)
Botrytis , Disease Resistance , Fragaria , Plant Diseases , Plant Proteins , Botrytis/physiology , Fragaria/genetics , Fragaria/microbiology , Plant Diseases/microbiology , Plant Diseases/genetics , Disease Resistance/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Gene Expression Regulation, Plant , Glucan 1,3-beta-Glucosidase/metabolism , Glucan 1,3-beta-Glucosidase/genetics
6.
BMC Biotechnol ; 24(1): 35, 2024 May 24.
Article in English | MEDLINE | ID: mdl-38790016

ABSTRACT

Fusarium head blight (FHB) is a devastating fungal disease affecting different cereals, particularly wheat, and poses a serious threat to global wheat production. Chitinases and ß-glucanases are two important proteins involved in lysing fungal cell walls by targeting essential macromolecular components, including chitin and ß-glucan micro fibrils. In our experiment, a transgenic wheat (Triticum aestivum) was generated by introducing chitinase and glucanase genes using Biolistic technique and Recombinant pBI121 plasmid (pBI-ChiGlu (-)). This plasmid contained chitinase and glucanase genes as well as nptII gene as a selectable marker. The expression of chitinase and glucanase was individually controlled by CaMV35S promoter and Nos terminator. Immature embryo explants from five Iranian cultivars (Arta, Moghan, Sisun, Gascogen and A-Line) were excised from seeds and cultured on callus induction medium to generate embryonic calluses. Embryogenic calluses with light cream color and brittle texture were selected and bombarded using gold nanoparticles coated with the recombinant pBI-ChiGlu plasmid. Bombarded calluses initially were transferred to selective callus induction medium, and later, they were transfferd to selective regeneration medium. The selective agent was kanamycin at a concentration of 25 mg/l in both media. Among five studied cultivars, A-Line showed the highest transformation percentage (4.8%), followed by the Sisun, Gascogen and Arta in descending order. PCR and Southern blot analysis confirmed the integration of genes into the genome of wheat cultivars. Furthermore, in an in-vitro assay, the growth of Fusarium graminearum was significantly inhibited by using 200 µg of leaf protein extract from transgenic plants. According to our results, the transgenic plants (T1) showed the resistance against Fusarium when were compared to the non-transgenic plants. All transgenic plants showed normal fertility and no abnormal response was observed in their growth and development.


Subject(s)
Chitinases , Disease Resistance , Fusarium , Plant Diseases , Triticum , Chitinases/genetics , Chitinases/metabolism , Disease Resistance/genetics , Fusarium/genetics , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/metabolism , Iran , Plant Diseases/microbiology , Plant Diseases/genetics , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Triticum/genetics , Triticum/metabolism , Triticum/microbiology
7.
BMC Plant Biol ; 24(1): 339, 2024 Apr 26.
Article in English | MEDLINE | ID: mdl-38671375

ABSTRACT

BACKGROUND: Many phytopathogens secrete a large number of cell wall degrading enzymes (CWDEs) to decompose host cell walls in order to penetrate the host, obtain nutrients and accelerate colonization. There is a wide variety of CWDEs produced by plant pathogens, including glycoside hydrolases (GHs), which determine the virulence, pathogenicity, and host specificity of phytopathogens. The specific molecular mechanisms by which pathogens suppress host immunity remain obscure. RESULT: In this study, we found that CgEC124 encodes a glycosyl hydrolase with a signal peptide and a conserved Glyco_hydro_cc domain which belongs to glycoside hydrolase 128 family. The expression of CgEC124 was significantly induced in the early stage of Colletotrichum graminicola infection, especially at 12 hpi. Furthermore, CgEC124 positively regulated the pathogenicity, but it did not impact the vegetative growth of mycelia. Ecotopic transient expression of CgEC124 decreased the disease resistance and callose deposition in maize. Moreover, CgEC124 exhibited the ß-1,3-glucanase activity and suppresses glucan-induced ROS burst in maize leaves. CONCLUSIONS: Our results indicate that CgEC124 is required for full virulence of C. graminicola but not for vegetative growth. CgEC124 increases maize susceptibility by inhibiting host reactive oxygen species burst as well as callose deposition. Meanwhile, our data suggests that CgEC124 explores its ß-1,3-glucanase activity to prevent induction of host defenses.


Subject(s)
Colletotrichum , Plant Diseases , Plant Immunity , Zea mays , Colletotrichum/pathogenicity , Disease Resistance , Fungal Proteins/metabolism , Fungal Proteins/genetics , Glucan 1,3-beta-Glucosidase/metabolism , Glucan 1,3-beta-Glucosidase/genetics , Glucans/metabolism , Plant Diseases/microbiology , Plant Diseases/immunology , Reactive Oxygen Species/metabolism , Zea mays/immunology , Zea mays/microbiology
8.
FEBS J ; 291(9): 2009-2022, 2024 May.
Article in English | MEDLINE | ID: mdl-38380733

ABSTRACT

Laminaripentaose (L5)-producing ß-1,3-glucanases can preferentially cleave the triple-helix curdlan into ß-1,3-glucooligosaccharides, especially L5. In this study, a newly identified member of the glycoside hydrolase family 64, ß-1,3-glucanase from Streptomyces pratensis (SpGlu64A), was functionally and structurally characterized. SpGlu64A shared highest identity (30%) with a ß-1,3-glucanase from Streptomyces matensis. The purified SpGlu64A showed maximal activity at pH 7.5 and 50 °C, and exhibited strict substrate specificity toward curdlan (83.1 U·mg-1). It efficiently hydrolyzed curdlan to produce L5 as the end product. The overall structure of SpGlu64A consisted of a barrel domain and a mixed (α/ß) domain, which formed an unusually wide groove with a crescent-like structure. In the two complex structures (SpGlu64A-L3 and SpGlu64A-L4), two oligosaccharide chains were captured and the triple-helical structure was relatively compatible with the wide groove, which suggested the possibility of binding to the triple-helical ß-1,3-glucan. A catalytic framework (ß6-ß9-ß10) and the steric hindrance formed by the side chains of residues Y161, N163, and H393 in the catalytic groove were predicted to complete the exotype-like cleavage manner. On the basis of the structure, a fusion protein with the CBM56 domain (SpGlu64A-CBM) and a mutant (Y161F; by site-directed mutation) were obtained, with 1.2- and 1.7-fold increases in specific activity, respectively. Moreover, the combined expression of SpGlu64A-CBM and -Y161F improved the enzyme activity by 2.63-fold. The study will not only be helpful in understanding the reaction mechanism of ß-1,3-glucanases but will also provide a basis for further enzyme engineering.


Subject(s)
Oligosaccharides , Streptomyces , beta-Glucans , Streptomyces/enzymology , Streptomyces/genetics , Substrate Specificity , beta-Glucans/metabolism , Oligosaccharides/metabolism , Oligosaccharides/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Models, Molecular , Glucan 1,3-beta-Glucosidase/metabolism , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/chemistry , Amino Acid Sequence , Glycoside Hydrolases/genetics , Glycoside Hydrolases/metabolism , Glycoside Hydrolases/chemistry , Catalytic Domain , Crystallography, X-Ray , Hydrolysis , Hydrogen-Ion Concentration , Kinetics
9.
Carbohydr Polym ; 273: 118609, 2021 Dec 01.
Article in English | MEDLINE | ID: mdl-34561008

ABSTRACT

Chitooligosaccharides (CHOS) with multiple biological activities are usually produced through enzymatic hydrolysis of chitosan or chitin. However, purification and recycling of the enzyme have largely limited the advancement of CHOS bioproduction. Here, we engineered a novel enzyme by fusing the native chitosanase Csn75 with a carbohydrate-binding module (CBM) that can specifically bind to curdlan. The recombinase Csn75-CBM was successfully expressed by Pichia pastoris and allowed one-step purification and immobilization in the chitosanase immobilized curdlan packed-bed reactor (CICPR), where a maximum adsorption capacity of 39.59 mg enzyme/g curdlan was achieved. CHOS with degrees of polymerization of 2-5 (a hydrolysis yield of 97.75%), 3-6 (75.45%), and 3-7 (73.2%) were continuously produced by adjusting the ratio of enzyme and chitosan or the flow rate of chitosan. Moreover, the CICPR exhibited good stability and reusability after several cycles. The recombinase Csn75-CBM has greatly improved the efficiency of the bioproduction of CHOS.


Subject(s)
Chitosan/chemical synthesis , Enzymes, Immobilized/chemistry , Glucan 1,3-beta-Glucosidase/chemistry , Glycoside Hydrolases/chemistry , Oligosaccharides/chemical synthesis , Aspergillus fumigatus/enzymology , Bacillus/enzymology , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Enzymes, Immobilized/genetics , Fungal Proteins/chemistry , Fungal Proteins/genetics , Glucan 1,3-beta-Glucosidase/genetics , Glycoside Hydrolases/genetics , Mutation , Peptide Fragments/chemistry , Peptide Fragments/genetics , Protein Domains/genetics , Protein Engineering , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , beta-Glucans
10.
Carbohydr Polym ; 245: 116486, 2020 Oct 01.
Article in English | MEDLINE | ID: mdl-32718606

ABSTRACT

Curdlan is a bacterial, water-insoluble, linear homopolysaccharide that has been widely used in the food industry. In this study, genome information of strain CGMCC 11546, a UV-induced high-yield mutant of the model curdlan-producing strain Agrobacterium sp. ATCC 31749, was used to investigate the molecular mechanism of curdlan biosynthesis. The maximum curdlan yield of 47.97 ± 0.57 g/L was obtained from strain CGMCC 11546 by using optimal media containing 60 g/L sucrose, 6 g/L yeast, 2 g/L KH2PO4, 0.4 g/L MgSO4·7H2O, 2 g/L CaCO3, 0.1 g/L FeSO4·7H2O, 0.04 g/L MnSO4, and 0.02 g/L ZnCl2 at 30 °C and 280 rpm after 96 h of fermentation. The gel strength of curdlan was improved by 41 % by knocking out the ß-1,3-glucanase genes exoK and exsH of strain CGMCC 11546. Furthermore, the application of curdlan from the ΔexoK-exsH strain in noodles significantly improved the eating quality of both raw and cooked noodles.


Subject(s)
Agrobacterium/enzymology , Agrobacterium/genetics , Genome, Bacterial , Polysaccharides, Bacterial/metabolism , beta-Glucans/metabolism , Agrobacterium/radiation effects , Bacterial Proteins/genetics , Culture Media/chemistry , Dietary Supplements , Fermentation , Food Quality , Gels/chemistry , Gene Deletion , Glucan 1,3-beta-Glucosidase/genetics , Molecular Weight , Organisms, Genetically Modified , Ultraviolet Rays , Whole Genome Sequencing/methods
11.
Food Chem ; 324: 126891, 2020 Sep 15.
Article in English | MEDLINE | ID: mdl-32339790

ABSTRACT

We determined whether heat and chemical treatments could reduce the decay of kiwifruit caused by Botrytis cinerea during postharvest storage. Kiwifruits were treated with 5 g/L (w/v) potassium sorbate (PS), with a 48 °C hot water treatment (HT), and with a combined treatment (HT + PS). Mycelial growth of B. cinerea and the postharvest quality of 'XuXiang' kiwifruits were evaluated. HT + PS significantly inhibited mycelial growth, germ tube growth, and spore germination of B. cinerea. This treatment also reduced the incidence of gray mold in kiwifruit postharvest, and enhanced activities of defense-related enzymes in kiwifruit tissues. Compared with the control, all treatments resulted in lower malondialdehyde (MDA) contents and higher total phenolic contents in kiwifruits. HT + PS also increased the activities of chitinase and ß-1,3-glucanase and the transcript levels of their encoding genes. HT + PS can improve kiwifruit quality and reduce decay during postharvest storage.


Subject(s)
Actinidia/microbiology , Botrytis/drug effects , Sorbic Acid/pharmacology , Actinidia/chemistry , Actinidia/enzymology , Botrytis/genetics , Chitinases/genetics , Chitinases/metabolism , DNA, Fungal/metabolism , Food Quality , Fruit/chemistry , Fruit/enzymology , Fruit/microbiology , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/metabolism , Hot Temperature , Malondialdehyde/metabolism , Phenols/metabolism
12.
Mol Biol Rep ; 47(2): 935-942, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31741259

ABSTRACT

Phytophthora is considered one of the most destructive genus for many agricultural plant species worldwide, with a strong environmental and economic impact. Phytophthora cinnamomi is a highly aggressive Phytophthora species associated with the forest decline and responsible for the ink disease in chestnut trees (Castanea sativa Miller), a culture which is extremely important in Europe. This pathogenicity occurs due to the action of several enzymes like the hydrolysis of 1,3-ß-glucans at specific sites by the enzyme endo-1,3-ß-D-glucosidase. The aim of this work to analyze the heterologous expression in two microorganisms, Escherichia coli and Pichia pastoris, of an endo-1,3-ß-D-glucosidase encoded by the gene ENDO1 (AM259651) from P. cinnamomi. Different plasmids were used to clone the gene on each organism and the real-time quantitative polymerase chain reaction was used to determine its level of expression. Homologous expression was also analyzed during growth in different carbon sources (glucose, cellulose, and sawdust) and time-course experiments were used for endo-1,3-ß-D-glucosidase production. The highest expression of the endo-1,3-ß-D-glucosidase gene occurred in glucose after 8 h of induction. In vivo infection of C. sativa by P. cinnamomi revealed an increase in endo-1,3-ß-D-glucosidase expression after 12 h. At 24 h its expression decreased and at 48 h there was again a slight increase in expression, and more experiments in order to further explain this fact are underway.


Subject(s)
Glucan Endo-1,3-beta-D-Glucosidase/genetics , Phytophthora/genetics , Cloning, Molecular/methods , Glucan 1,3-beta-Glucosidase/genetics , Glucan Endo-1,3-beta-D-Glucosidase/metabolism , Glucosidases/genetics , Glucosidases/metabolism , Phytophthora/metabolism , Plant Diseases , Real-Time Polymerase Chain Reaction/methods
13.
FEBS J ; 287(6): 1116-1137, 2020 03.
Article in English | MEDLINE | ID: mdl-31595646

ABSTRACT

The enzymes from hyperthermophilic microorganisms populating volcanic sites represent interesting cases of protein adaptation and biotransformations under conditions where conventional enzymes quickly denature. The difficulties in cultivating extremophiles severely limit access to this class of biocatalysts. To circumvent this problem, we embarked on the exploration of the biodiversity of the solfatara Pisciarelli, Agnano (Naples, Italy), to discover hyperthermophilic carbohydrate-active enzymes (CAZymes) and to characterize the entire set of such enzymes in this environment (CAZome). Here, we report the results of the metagenomic analysis of two mud/water pools that greatly differ in both temperature and pH (T = 85 °C and pH 5.5; T = 92 °C and pH 1.5, for Pool1 and Pool2, respectively). DNA deep sequencing and following in silico analysis led to 14 934 and 17 652 complete ORFs in Pool1 and Pool2, respectively. They exclusively belonged to archaeal cells and viruses with great genera variance within the phylum Crenarchaeota, which reflected the difference in temperature and pH of the two Pools. Surprisingly, 30% and 62% of all of the reads obtained from Pool1 and 2, respectively, had no match in nucleotide databanks. Genes associated with carbohydrate metabolism were 15% and 16% of the total in the two Pools, with 278 and 308 putative CAZymes in Pool1 and 2, corresponding to ~ 2.0% of all ORFs. Biochemical characterization of two CAZymes of a previously unknown archaeon revealed a novel subfamily GH5_19 ß-mannanase/ß-1,3-glucanase whose hemicellulose specificity correlates with the vegetation surrounding the sampling site, and a novel NAD+ -dependent GH109 with a previously unreported ß-N-acetylglucosaminide/ß-glucoside specificity. DATABASES: The sequencing reads are available in the NCBI Sequence Read Archive (SRA) database under the accession numbers SRR7545549 (Pool1) and SRR7545550 (Pool2). The sequences of GH5_Pool2 and GH109_Pool2 are available in GenBank database under the accession numbers MK869723 and MK86972, respectively. The environmental data relative to Pool1 and Pool2 (NCBI BioProject PRJNA481947) are available in the Biosamples database under the accession numbers SAMN09692669 (Pool1) and SAMN09692670 (Pool2).


Subject(s)
Bacterial Proteins/genetics , Extreme Environments , Glucan 1,3-beta-Glucosidase/genetics , Metagenomics , beta-Mannosidase/genetics , Bacterial Proteins/metabolism , Crenarchaeota/enzymology , Glucan 1,3-beta-Glucosidase/metabolism , Hydrogen-Ion Concentration , Temperature , beta-Mannosidase/metabolism
14.
PLoS One ; 14(9): e0223216, 2019.
Article in English | MEDLINE | ID: mdl-31568481

ABSTRACT

The use of biopolymers as elicitors in controlling plant diseases is gaining momentum world-wide due to their eco-friendly and non-toxic nature. In the present study, we have used an algal biopolymer (sodium alginate) and tested its applicability as an elicitor in inducing resistance factors against Alternaria solani, which causes early blight disease in Solanum lycopersicum (tomato plant). We have pre-treated tomato plants with different concentrations of sodium alginate (0.2%, 0.4%, and 0.6%) before A. solani infection. We found that sodium alginate has effectively controlled the growth of A. solani. In addition, a significant increase in the expression levels of SOD was observed in response to pathogen infection. The increased protease inhibitors activity further suggest that sodium alginate restrict the development of A. solani infection symptoms in tomato leaves. This corroborates well with the cell death analysis wherein increased sodium alginate pre-treatment results in decreased cell death. Also, the expression profile analyses reveal the induction of genes only in sodium alginate-pretreated tomato leaves, which are implicated in plant defense mechanism. Taken together, our results suggest that sodium alginate can be used as an elicitor to induce resistance against A. solani in tomato plants.


Subject(s)
Alginates/pharmacology , Alternaria/immunology , Disease Resistance/drug effects , Plant Diseases/prevention & control , Plant Growth Regulators/pharmacology , Plant Proteins/genetics , Solanum lycopersicum/drug effects , Alternaria/pathogenicity , Antioxidants/pharmacology , Cell Death/drug effects , Chitinases/genetics , Chitinases/immunology , Disease Resistance/genetics , Gene Expression Regulation, Plant/drug effects , Gene Expression Regulation, Plant/immunology , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/immunology , Solanum lycopersicum/genetics , Solanum lycopersicum/immunology , Solanum lycopersicum/microbiology , Plant Cells/drug effects , Plant Cells/microbiology , Plant Diseases/genetics , Plant Diseases/immunology , Plant Diseases/microbiology , Plant Leaves/drug effects , Plant Leaves/genetics , Plant Leaves/immunology , Plant Leaves/microbiology , Plant Proteins/immunology , Protease Inhibitors/immunology , Protease Inhibitors/metabolism , Superoxide Dismutase/genetics , Superoxide Dismutase/immunology
16.
Sci Rep ; 9(1): 2791, 2019 02 26.
Article in English | MEDLINE | ID: mdl-30808937

ABSTRACT

Plants are continuously challenged by pathogens, affecting most staple crops compromising food security. They have evolved different mechanisms to counterattack pathogen infection, including the accumulation of pathogenesis-related (PR) proteins. These proteins have been implicated in active defense, and their overexpression has led to enhanced resistance in nuclear transgenic plants, although in many cases constitutive expression resulted in lesion-mimic phenotypes. We decided to evaluate plastid transformation as an alternative to overcome limitations observed for nuclear transgenic technologies. The advantages include the possibilities to express polycistronic RNAs, to obtain higher protein expression levels, and the impeded gene flow due to the maternal inheritance of the plastome. We transformed Nicotiana tabacum plastids to co-express the tobacco PR proteins AP24 and ß-1,3-glucanase. Transplastomic tobacco lines were characterized and subsequently challenged with Rhizoctonia solani, Peronospora hyoscyami f.sp. tabacina and Phytophthora nicotianae. Results showed that transplastomic plants expressing AP24 and ß-1,3-glucanase are resistant to R. solani in greenhouse conditions and, furthermore, they are protected against P.hyoscyami f.sp. tabacina and P. nicotianae in field conditions under high inoculum pressure. Our results suggest that plastid co- expression of PR proteins AP24 and ß-1,3-glucanase resulted in enhanced resistance against filamentous pathogens.


Subject(s)
Biological Assay , Disease Resistance/genetics , Glucan 1,3-beta-Glucosidase/genetics , Nicotiana/genetics , Nicotiana/microbiology , Serine Endopeptidases/genetics , Environment, Controlled , Gene Expression , Phenotype , Plants, Genetically Modified , Nicotiana/immunology
17.
Int J Biol Macromol ; 125: 948-954, 2019 Mar 15.
Article in English | MEDLINE | ID: mdl-30576730

ABSTRACT

The aim of this work was to evaluate the possibility of control of wilt disease caused by Fusarium andiyazi through chitosan (CS) and chitosan nanoparticles (CNPs). In the present study, the expression pattern of pathogenesis-related (PR) proteins genes such as PR-1, PR-2 (ß-1,3-glucanase), PR-8 (chitinase), and PR-10 was analyzed using real-time RT-PCR. In vitro studies showed that among different concentrations (0.1-5.0 mg/ml), 5.0 mg/ml concentration of CS and CNPs produced maximum inhibition of radial mycelial growth, 54.8% and 73.81%, respectively. Also, upregulated expression of ß-1,3-glucanase, chitinase, PR-1 and PR-10 genes were recorded with 1.48, 1.15, 1.15, and 1.41, fold expression in 24 hpi, respectively, in plants inoculated with CNPs. The most significant up-regulation was observed in transcript profile of SOD that showed 4.5-foldexpression, at 48 hpi. Therefore, our results confirmed that CS and CNPs induced up-regulation of PR-proteins and antioxidant genes might play a significant role for successful biocontrol.


Subject(s)
Chitosan/pharmacology , Fusarium/drug effects , Gene Expression Regulation, Plant , Nanoparticles/chemistry , Plant Proteins/genetics , Solanum lycopersicum/drug effects , Chitinases/genetics , Chitinases/immunology , Chitosan/chemistry , Enzyme Activation/drug effects , Fusarium/growth & development , Fusarium/pathogenicity , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/immunology , Host-Pathogen Interactions , Solanum lycopersicum/genetics , Solanum lycopersicum/immunology , Solanum lycopersicum/microbiology , Mycelium/drug effects , Mycelium/growth & development , Mycelium/pathogenicity , Plant Diseases/genetics , Plant Diseases/immunology , Plant Diseases/microbiology , Plant Proteins/agonists , Plant Proteins/immunology , Stress, Physiological/drug effects , Stress, Physiological/immunology , Superoxide Dismutase/genetics , Superoxide Dismutase/immunology
18.
Biosci Biotechnol Biochem ; 83(3): 446-455, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30387379

ABSTRACT

Aluminum (Al) toxicity is a primary limiting factor for crop production in acid soils. Callose deposition, an early indicator and likely a contributor to Al toxicity, is induced rapidly in plant roots under Al stress. SbGlu1, encoding a ß-1,3-glucanase for callose degradation, showed important roles in sorghum Al resistance, yet its regulatory mechanisms remain unclear. The STOP1 transcription factors mediate Al signal transduction in various plants. Here, we identified their homolog in sweet sorghum, SbSTOP1, transcriptionally activated the expression of SbGlu1. Moreover, the DNA sequence recognized by SbSTOP1 on the promoter of SbGlu1 lacked the reported cis-acting element. Complementation lines of Atstop1 with SbSTOP1 revealed enhanced transcription levels of SbGlu1 homologous gene and reduced callose accumulation in Arabidopsis. These results indicate, for the first time, that SbSTOP1 is involved in the modulation of callose deposition under Al stress via transcriptional regulation of a ß-1,3-glucanase gene.


Subject(s)
Aluminum/toxicity , Glucan 1,3-beta-Glucosidase/genetics , Glucans/metabolism , Plant Proteins/metabolism , Sorghum/drug effects , Sorghum/physiology , Transcription, Genetic/drug effects , Arabidopsis/drug effects , Arabidopsis/genetics , Arabidopsis/physiology , Gene Expression Regulation, Plant/drug effects , HEK293 Cells , Humans , Promoter Regions, Genetic/genetics , Sorghum/genetics , Sorghum/metabolism
19.
J Exp Bot ; 69(15): 3715-3728, 2018 06 27.
Article in English | MEDLINE | ID: mdl-29901781

ABSTRACT

Both plants and animals must contend with changes in their environment. The ability to respond appropriately to these changes often underlies the ability of the individual to survive. In plants, an early response to environmental stress is an alteration in plasmodesmatal permeability with accompanying changes in cell to cell signaling. However, the ways in which plasmodesmata are modified, the molecular players involved in this regulation, and the biological significance of these responses are not well understood. Here, we examine the effects of nutrient scarcity and excess on plasmodesmata-mediated transport in the Arabidopsis thaliana root and identify two CALLOSE SYNTHASES and two ß-1,3-GLUCANASES as key regulators of these processes. Our results suggest that modification of plasmodesmata-mediated signaling underlies the ability of the plant to maintain root growth and properly partition nutrients when grown under conditions of excess nutrients.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Glucans/metabolism , Metals, Heavy/toxicity , Arabidopsis/drug effects , Arabidopsis Proteins/genetics , Glucan 1,3-beta-Glucosidase/genetics , Glucan 1,3-beta-Glucosidase/metabolism , Glucosyltransferases/genetics , Glucosyltransferases/metabolism , Permeability/drug effects , Plant Roots/drug effects , Plant Roots/physiology , Plasmodesmata/drug effects , Plasmodesmata/metabolism
20.
Int J Biol Macromol ; 108: 942-946, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29104052

ABSTRACT

ß-1,3-glucan plays a role in Candida biofilm formation and survival of biofilm-forming Candida to stresses. In this study, we evaluated the antibiofilm activity of ß-1,3-glucanase, which can degrade poly-ß(1→3)-glucose of Candida albicans biofilms. Biofilm was dispersed by 55.96%. ß-1,3-glucanase had no effect on Candida planktonic growth as well as adhesion. ß-1,3-glucanase markedly enhanced the antifungal susceptibility of fluconazole and amphotericin B. The examination using confocal laser scanning microscopy and scanning electron microscope confirmed the antibiofilm activity of ß-1,3-glucanase. Our findings demonstrate that ß-1,3-glucanase may be useful as an antibiofilm agent.


Subject(s)
Antifungal Agents/pharmacology , Biofilms/drug effects , Candida albicans/drug effects , Candida albicans/physiology , Drug Resistance, Fungal , Glucan 1,3-beta-Glucosidase/metabolism , Biofilms/growth & development , Candida albicans/ultrastructure , Glucan 1,3-beta-Glucosidase/genetics , Microbial Sensitivity Tests , Phenotype
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