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1.
Ther Drug Monit ; 44(3): 391-395, 2022 06 01.
Article in English | MEDLINE | ID: mdl-35067667

ABSTRACT

BACKGROUND: Although the relationship between NUDT15 and thiopurine-induced leukopenia has been proven in previous studies, no prominent factors explaining interindividual variations in its active metabolite, 6-thioguanine nucleotide (6-TGN), and clinical efficacy have been identified. In this study, the correlation between genotypes (thiopurine S-methyltransferase, NUDT15, and ITPA polymorphisms), 6-TGN concentrations, and clinical outcomes (efficacy and side effects) in patients with inflammatory bowel disease were investigated. METHODS: In total, 160 patients with inflammatory bowel disease were included, and the 3 genotyped genes and 6-TGN levels were measured by high-performance liquid chromatography. Statistical analyses and calculations were performed to determine their relationships. RESULTS: ITPA genotypes and 6-TGN concentration were both associated with the clinical effectiveness of azathioprine (P = 0.036 and P = 4.6 × 10-7), with a significant correlation also detected between them (P = 0.042). Patients with ITPA variant alleles exhibited higher 6-TGN levels than those with the wild-type allele. In addition, the relationship between NUDT15 and leukopenia and neutropenia was confirmed (P = 1.79 × 10-7 and 0.002). CONCLUSIONS: In summary, it is recommended that both ITPA and NUDT15 genotyping should be performed before azathioprine initiation. Moreover, the 6-TGN concentration should be routinely monitored during the later period of treatment.


Subject(s)
Inflammatory Bowel Diseases , Pyrophosphatases , Azathioprine/therapeutic use , Biomarkers/metabolism , China , Guanine Nucleotides/genetics , Guanine Nucleotides/metabolism , Humans , Inflammatory Bowel Diseases/drug therapy , Inflammatory Bowel Diseases/genetics , Inflammatory Bowel Diseases/metabolism , Leukopenia/chemically induced , Leukopenia/drug therapy , Leukopenia/genetics , Methyltransferases/genetics , Methyltransferases/metabolism , Prognosis , Pyrophosphatases/genetics , Pyrophosphatases/metabolism , Thionucleotides/genetics , Thionucleotides/metabolism
2.
Curr Genet ; 65(4): 893-897, 2019 Aug.
Article in English | MEDLINE | ID: mdl-30937517

ABSTRACT

This mini-review considers the idea that guanylate nucleotide energy charge acts as an integrative signal for the regulation of gene expression in eukaryotic cells and discusses possible routes for that signal's transduction. Gene expression is intimately linked with cell nutrition and diverse signaling systems serve to coordinate the synthesis of proteins required for growth and proliferation with the prevailing cellular nutritional status. Using short pathways for the inducible and futile consumption of ATP or GTP in engineered cells of Saccharomyces cerevisiae, we have recently shown that GTP levels can also play a role in determining how genes act to respond to changes in cellular energy supply. This review aims to interpret the importance of GTP as an integrative signal in the context of an increasing body of evidence indicating the spatio-temporal complexity of cellular de novo purine nucleotide biosynthesis.


Subject(s)
Energy Metabolism/genetics , Guanine Nucleotides/genetics , Transcription, Genetic , Purines/metabolism , Saccharomyces cerevisiae/genetics , Signal Transduction/genetics
3.
Biochemistry ; 58(17): 2228-2242, 2019 04 30.
Article in English | MEDLINE | ID: mdl-30945846

ABSTRACT

The oxidoreductase YdhV in Escherichia coli has been predicted to belong to the family of molybdenum/tungsten cofactor (Moco/Wco)-containing enzymes. In this study, we characterized the YdhV protein in detail, which shares amino acid sequence homology with a tungsten-containing benzoyl-CoA reductase binding the bis-W-MPT (for metal-binding pterin) cofactor. The cofactor was identified to be of a bis-Mo-MPT type with no guanine nucleotides present, which represents a form of Moco that has not been found previously in any molybdoenzyme. Our studies showed that YdhV has a preference for bis-Mo-MPT over bis-W-MPT to be inserted into the enzyme. In-depth characterization of YdhV by X-ray absorption and electron paramagnetic resonance spectroscopies revealed that the bis-Mo-MPT cofactor in YdhV is redox active. The bis-Mo-MPT and bis-W-MPT cofactors include metal centers that bind the four sulfurs from the two dithiolene groups in addition to a cysteine and likely a sulfido ligand. The unexpected presence of a bis-Mo-MPT cofactor opens an additional route for cofactor biosynthesis in E. coli and expands the canon of the structurally highly versatile molybdenum and tungsten cofactors.


Subject(s)
Coenzymes/chemistry , Escherichia coli Proteins/chemistry , Escherichia coli/enzymology , Ferredoxins/chemistry , Metalloproteins/chemistry , Molybdenum/chemistry , Organometallic Compounds/chemistry , Oxidoreductases/chemistry , Pteridines/chemistry , Pterins/chemistry , Coenzymes/genetics , Coenzymes/metabolism , Electron Spin Resonance Spectroscopy , Escherichia coli/genetics , Escherichia coli/metabolism , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Ferredoxins/genetics , Ferredoxins/metabolism , Guanine Nucleotides/chemistry , Guanine Nucleotides/genetics , Guanine Nucleotides/metabolism , Metalloproteins/genetics , Metalloproteins/metabolism , Molecular Structure , Molybdenum/metabolism , Molybdenum Cofactors , Organometallic Compounds/metabolism , Oxidation-Reduction , Oxidoreductases/genetics , Oxidoreductases/metabolism , Pteridines/metabolism , Pterins/metabolism
4.
Pharmacogenomics J ; 18(1): 160-166, 2018 01.
Article in English | MEDLINE | ID: mdl-28045129

ABSTRACT

The conversion of azathioprine (AZA) to mercaptopurine (MP) is mediated by glutathione transferase Mu1 (GSTM1), alpha1 (GSTA1) and alpha2 (GSTA2). We designed a case-control study with data from the TOPIC trial to explore the effects of genetic variation on steady state 6-methylmercaptopurine ribonucleotide (6-MMPR) and 6-thioguanine nucleotide (6-TGN) metabolite levels. We included 199 patients with inflammatory bowel disease (126 on AZA and 73 on MP). GSTM1-null genotype carriers on AZA had two-fold lower 6-MMPR levels than AZA users carrying one or two copies of GSTM1 (2239 (1006-4587) versus 4371 (1897-7369) pmol/8 × 108 RBCs; P<0.01). In patients on MP (control group) 6-MMPR levels were comparable (6195 (1551-10712) versus 6544 (1717-11600) pmol/8 × 108 RBCs; P=0.84). The 6-TGN levels were not affected by the GSTM1 genotype. The presence of genetic variants in GSTA1 and GSTA2 was not related to the 6-MMPR and 6-TGN levels.


Subject(s)
Anti-Inflammatory Agents, Non-Steroidal/therapeutic use , Azathioprine/therapeutic use , Glutathione Transferase/genetics , Immunosuppressive Agents/therapeutic use , Thioinosine/analogs & derivatives , Thionucleotides/metabolism , Adult , Azathioprine/metabolism , Case-Control Studies , Female , Genotype , Guanine Nucleotides/genetics , Humans , Inflammatory Bowel Diseases/drug therapy , Inflammatory Bowel Diseases/genetics , Inflammatory Bowel Diseases/metabolism , Isoenzymes/genetics , Male , Mercaptopurine/metabolism , Middle Aged , Thioinosine/metabolism , Thionucleotides/genetics , Young Adult
5.
Biosci Rep ; 35(6)2015 Oct 20.
Article in English | MEDLINE | ID: mdl-26487707

ABSTRACT

Drosophila GoLoco motif-containing protein Pins is unusual in its highly efficient interaction with both GDP- and the GTP-loaded forms of the α-subunit of the heterotrimeric Go protein. We analysed the interactions of Gαo in its two nucleotide forms with GoLoco1-the first of the three GoLoco domains of Pins-and the possible structures of the resulting complexes, through combination of conventional fluorescence and FRET measurements as well as through molecular modelling. Our data suggest that the orientation of the GoLoco1 motif on Gαo significantly differs between the two nucleotide states of the latter. In other words, a rotation of the GoLoco1 peptide in respect with Gαo must accompany the nucleotide exchange in Gαo. The sterical hindrance requiring such a rotation probably contributes to the guanine nucleotide exchange inhibitor activity of GoLoco1 and Pins as a whole. Our data have important implications for the mechanisms of Pins regulation in the process of asymmetric cell divisions.


Subject(s)
Drosophila Proteins/genetics , GTP-Binding Protein alpha Subunits, Gi-Go/genetics , Guanine Nucleotide Dissociation Inhibitors/genetics , Guanine Nucleotides/genetics , Heterotrimeric GTP-Binding Proteins/genetics , Amino Acid Motifs/genetics , Animals , Asymmetric Cell Division/genetics , Cell Cycle Proteins , Drosophila/genetics , Drosophila Proteins/chemistry , GTP-Binding Protein alpha Subunits, Gi-Go/chemistry , Guanine Nucleotide Dissociation Inhibitors/chemistry , Heterotrimeric GTP-Binding Proteins/chemistry , Peptides/chemistry , Peptides/genetics
6.
Infect Immun ; 83(2): 544-50, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25404027

ABSTRACT

Mycobacterium tuberculosis is able to synthesize molybdopterin cofactor (MoCo), which is utilized by numerous enzymes that catalyze redox reactions in carbon, nitrogen, and sulfur metabolism. In bacteria, MoCo is further modified through the activity of a guanylyltransferase, MobA, which converts MoCo to bis-molybdopterin guanine dinucleotide (bis-MGD), a form of the cofactor that is required by the dimethylsulfoxide (DMSO) reductase family of enzymes, which includes the nitrate reductase NarGHI. In this study, the functionality of the mobA homolog in M. tuberculosis was confirmed by demonstrating the loss of assimilatory and respiratory nitrate reductase activity in a mobA deletion mutant. This mutant displayed no survival defects in human monocytes or mouse lungs but failed to persist in the lungs of guinea pigs. These results implicate one or more bis-MGD-dependent enzymes in the persistence of M. tuberculosis in guinea pig lungs and underscore the applicability of this animal model for assessing the role of molybdoenzymes in this pathogen.


Subject(s)
Guanine Nucleotides/metabolism , Mycobacterium tuberculosis/enzymology , Mycobacterium tuberculosis/pathogenicity , Pterins/metabolism , Tuberculosis/microbiology , Animals , Female , Gene Deletion , Gene Expression Regulation, Bacterial , Guanine Nucleotides/genetics , Guinea Pigs , Humans , Lung/microbiology , Mice , Mice, Inbred C57BL , Monocytes/microbiology , Mycobacterium tuberculosis/genetics , Nitrate Reductase/genetics , Sulfurtransferases/genetics
7.
Genet Mol Res ; 13(4): 10574-81, 2014 Dec 12.
Article in English | MEDLINE | ID: mdl-25511042

ABSTRACT

The aim of this study was to determine the imprinting status of the Ras protein-specific guanine nucleotide-releasing factor 1 (Rasgrf1) gene in domestic pigs. In this study, a 228-bp partial sequence located in exon 14 and a 193-bp partial sequence located in exon 1 of the Rasgrf1 gene in domestic pigs were obtained. A novel single nucleotide polymorphism, a G/A transition, was identified in Rasgrf1 exon 14, and then the reciprocal Berkshire x Wannan black F1 hybrid model and the reverse transcription-polymerase chain reaction-restriction fragment length polymorphism method were used to detect the imprinting status of the porcine Rasgrf1 gene at the 1-day-old developmental stage. Imprinting analysis showed that, compared to the imprinted expression of the Rasgrf1 gene in mouse and rat, a variable imprinting status was observed in domestic pigs. In principle, the porcine Rasgrf1 gene was maternally expressed in the liver and small intestine, paternally expressed in the lung, and biallelically expressed in brain, heart, spleen, kidney, stomach, pancreas, fat, testis, ovary, longissimus dorsi, and pituitary tissues. In conclusion, our results indicated that the Rasgrf1 gene shows both species- and tissue-specific variation in imprinted expression.


Subject(s)
Genomic Imprinting , Polymorphism, Single Nucleotide/genetics , Sus scrofa/genetics , ras-GRF1/genetics , Animals , Exons/genetics , Female , Gene Expression Regulation, Developmental , Guanine Nucleotides/genetics , Male , Mice , Rats , Sus scrofa/growth & development , Tissue Distribution
8.
Ther Drug Monit ; 34(5): 584-92, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22972540

ABSTRACT

BACKGROUND: Thiopurine S-methyltransferase (TPMT) is an excellent example of an enzyme whose pharmacogenetic polymorphisms affect efficacy and toxicity of a drug. The association between TPMT activity and thiopurine-related myelosuppression is well recognized. To study the significance of TPMT deficiency in thiopurine metabolism and immunosuppressive activity in vitro, we established RNA interference-based TPMT knockdown (kd) in a Jurkat cell line. RESULTS: In Jurkat TPMT kd cells, TPMT expression was reduced to 73% at the RNA level and 83% at the protein level. TPMT kd cells were more sensitive to 6-mercaptopurine (6-MP) (10 µmol/L) and 6-thioguanine (6-TG) (8 µmol/L) than wild-type (wt) cells, (32% versus 20%) and (18% versus 9%), respectively. Both Jurkat wt and kd cells were more sensitive to 6-TG-induced apoptosis than to 6-MP. 6-TG activity was also more affected by TPMT levels than was 6-MP as reflected by IC60, concentrations that is, 6-MP [4.6 µmol/L (wt) and 4.7 µmol/L (kd)], 6-TG [2.7 µmol/L (wt) and 0.8 µmol/L (kd)]. IC60 concentrations induced significant apoptosis in both Jurkat wt and kd cells (257%, versus 314%) with 6-MP and (323% versus 306%) with 6-TG, respectively. At IC60 (6-MP) 6-thioguanine nucleotides (6-TGN) accumulation in cells was 518 versus 447 pmol/million cells in wt and kd cells, respectively. On the other hand 6-TGN accumulation at IC60 (6-TG) was 477 versus 570 pmol/million cells in wt and kd cells, respectively. 6-Methylated mercaptopurine (6-MeMP) concentrations were more affected than 6-TGN by TPMT kd (194 versus 10 pmol/million cells) in wt and kd cells, respectively. CONCLUSION: We conclude that TPMT kd cells are an appropriate in vitro model to investigate the significance of TPMT deficiency with thiopurine therapy and could be helpful in understanding possible clinical consequences of TPMT polymorphism.


Subject(s)
Drug Hypersensitivity/enzymology , Drug Hypersensitivity/genetics , Methyltransferases/deficiency , Methyltransferases/genetics , Purine-Pyrimidine Metabolism, Inborn Errors/enzymology , Purine-Pyrimidine Metabolism, Inborn Errors/genetics , T-Lymphocytes/enzymology , Apoptosis/drug effects , Apoptosis/genetics , Cell Line, Tumor , Gene Knockdown Techniques/methods , Guanine Nucleotides/genetics , Guanine Nucleotides/metabolism , Humans , Immune Tolerance , Jurkat Cells , Mercaptopurine/metabolism , Mercaptopurine/pharmacology , Polymorphism, Genetic/drug effects , T-Lymphocytes/drug effects , Thioguanine/metabolism , Thioguanine/pharmacology , Thionucleotides/genetics , Thionucleotides/metabolism
9.
Neurologist ; 18(3): 159-70, 2012 May.
Article in English | MEDLINE | ID: mdl-22549360

ABSTRACT

INTRODUCTION: Mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) is a multisystem disorder caused by systemic cellular metabolic derangement that is characterized predominantly by rapidly progressive deterioration of the central nervous system. CASE REPORT: We describe a patient with an abrupt onset of rapidly recurring episodes of aphasia, hemianopsia, and parietal pseudocerebellar ataxia, leading to the diagnosis of A3243G mutation MELAS. These stroke-like episodes appeared to be initiated by metabolic derangement, as evidenced by lactic-acid elevation in the cerebral spinal fluid and lactate peaks observed on magnetic resonance spectroscopy. Magnetic resonance imaging further revealed that neuronal loss during the acute episodes occurred in regions of paradoxically increased cerebral blood flow. Diffusion-tensor and arterial-spin-labeled perfusion imaging showed that the volume of tissue loss after the stroke-like episodes greatly exceeded the limits of the cortical areas affected by the initial metabolic insult. The patient was consented to a trial of compassionate use, high-dose intravenous corticosteroids, resulting in marked and sustained clinical improvement. CONCLUSIONS: The majority of neurons lost in an acute episode are injured not by a primary failure to meet metabolic demand, but by a poorly regulated compensatory hyperperfusion response. Regional hyperperfusion leads to apoptotic cell death through a progression from vasogenic to cytotoxic edema. The efficacy of corticosteroids in our study patient demonstrates that inflammatory mediators and blood-brain barrier dysfunction may play a role in the pathophysiological cascade that leads to the regional hyperperfusion in MELAS.


Subject(s)
Guanine Nucleotides/genetics , MELAS Syndrome , Mutation/genetics , Steroids/therapeutic use , Brain , Cell Death , Cerebrovascular Circulation , Compassionate Use Trials , DNA, Mitochondrial/genetics , Diffusion Tensor Imaging , Humans , Longitudinal Studies , MELAS Syndrome/diagnosis , MELAS Syndrome/drug therapy , MELAS Syndrome/genetics , MELAS Syndrome/metabolism , Magnetic Resonance Spectroscopy , Male , Muscle, Skeletal/pathology , Positron-Emission Tomography , Retrospective Studies
10.
Eur J Endocrinol ; 166(5): 839-45, 2012 May.
Article in English | MEDLINE | ID: mdl-22307573

ABSTRACT

OBJECTIVE: Type 2 deiodinase gene (DIO2) polymorphisms have been associated with changes in pituitary-thyroid axis homeostasis. The -258A/G (SNP rs12885300) polymorphism has been associated with increased enzymatic activity, but data are conflicting. To characterize the effects of -258A/G polymorphism on intrathyroidal thyroxine (T(4)) to triiodothyronine (T(3)) conversion and thyroid hormone (TH) secretion pattern, we studied the effects of acute, TRH-mediated, TSH stimulation of the thyroid gland. DESIGN: Retrospective analysis. METHODS: The TH secretion in response to 500  µg i.v. TRH injection was studied in 45 healthy volunteers. RESULTS: Twenty-six subjects (16 females and ten males, 32.8 ± 10.4 years) were homozygous for the ancestral (-258A/A) allele and 19 (11 females and eight males, 31.1 ± 10.9 years) were carriers of the (-258G/x) variant. While no differences in the peak TSH and T(3) levels were observed, carriers of the -258G/x allele showed a blunted rise in free T(4) (FT(4); P<0.01). The -258G/x92Thr/Thr haplotype, compared with the other groups, had lower TSH values at 60  min (P<0.03). No differences were observed between genotypes in baseline TH levels. CONCLUSIONS: The -258G/x DIO2 polymorphism variant is associated with a decreased rate of acute TSH-stimulated FT(4) secretion with a normal T(3) release from the thyroid gland consistent with a shift in the reaction equilibrium toward the product. These data indicate that the -258G DIO2 polymorphism causes changes in the pattern of hormone secretion. These findings are a proof of concept that common polymorphisms in DIO2 can subtly affect the circulating levels of TH and might modulate the TH homeostasis.


Subject(s)
Iodide Peroxidase/genetics , Polymorphism, Single Nucleotide/genetics , Thyrotropin-Releasing Hormone/blood , Thyrotropin/biosynthesis , Adenine Nucleotides/genetics , Adult , Cohort Studies , Female , Guanine Nucleotides/genetics , Homeostasis/genetics , Humans , Iodide Peroxidase/physiology , Male , Prospective Studies , Retrospective Studies , Thyrotropin/metabolism , Thyrotropin-Releasing Hormone/metabolism , Young Adult , Iodothyronine Deiodinase Type II
11.
Biochemistry ; 51(1): 425-32, 2012 Jan 10.
Article in English | MEDLINE | ID: mdl-22148472

ABSTRACT

The cyclic dinucleotide c-di-GMP regulates lifestyle transitions in many bacteria, such as the change from a free motile state to a biofilm-forming community. Riboswitches that bind this second messenger are important downstream targets in this bacterial signaling pathway. The breakdown of c-di-GMP in the cell is accomplished enzymatically and results in the linear dinucleotide pGpG. The c-di-GMP-binding riboswitches must be able to discriminate between their cognate cyclic ligand and linear dinucleotides in order to be selective biological switches. It has been reported that the c-di-GMP-I riboswitch binds c-di-GMP 5 orders of magnitude better than the linear pGpG, but the cause of this large energetic difference in binding is unknown. Here we report binding data and crystal structures of several linear c-di-GMP analogues in complex with the c-di-GMP-I riboswitch. These data reveal the parameters for phosphate recognition and the structural basis of linear dinucleotide binding to the riboswitch. Additionally, the pH dependence of binding shows that exclusion of pGpG is not due to the additional negative charge on the ligand. These data reveal principles that, along with published work, will contribute to the design of c-di-GMP analogues with properties desirable for use as chemical tools and potential therapeutics.


Subject(s)
Aptamers, Nucleotide/chemistry , Bacterial Proteins/chemistry , Cyclic GMP/chemistry , RNA, Bacterial/chemistry , Bacterial Proteins/genetics , Crystallography, X-Ray , Gene Expression Regulation, Bacterial , Guanine Nucleotides/chemistry , Guanine Nucleotides/genetics , Guanosine Monophosphate/chemistry , Humans , Hydrogen-Ion Concentration , Ligands , Nucleic Acid Conformation , RNA, Bacterial/genetics , Riboswitch/genetics , Second Messenger Systems/genetics
12.
Toxicol Appl Pharmacol ; 256(1): 1-7, 2011 Oct 01.
Article in English | MEDLINE | ID: mdl-21767559

ABSTRACT

Metallothioneins (MTs) are low molecular weight, cysteine-rich, metal-binding proteins. Because of their rich thiol groups, MTs bind to the biologically essential metals and perform these metals' homeostatic regulations; absorb the heavy metals and assist with their transportation and extraction. The aim of this study was to investigate the association between the metallothionein 2A (MT2A) core promoter region -5 A/G single nucleotide polymorphism (SNP) and Cd, Pb, Zn and Cu levels in the blood samples. MT2A polymorphism was determined by the standard polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technique using the 616 blood samples and the genotype frequencies were found as 86.6% homozygote typical (AA), 12.8% heterozygote (AG) and 0.6% homozygote atypical (GG). Metal levels were analyzed by dual atomic absorption spectrophotometer system and the average levels of Cd, Pb, Zn and Cu in the blood samples were 1.69±1.57 ppb, 30.62±14.13 ppb, 0.98±0.49 ppm and 1.04±0.45 ppm, respectively. As a result; highly statistically significant associations were detected between the -5 A/G core promoter region SNP in the MT2A gene and Cd, Pb and Zn levels (p=0.004, p=0.012 and p=0.002, respectively), but no association was found with Cu level (p=0.595). Individuals with the GG genotype had statistically lower Zn level and higher Cd and Pb levels in the blood samples than individuals with AA and AG genotypes. This study suggests that having the GG genotype individuals may be more sensitive for the metal toxicity and they should be more careful about protecting their health against the toxic effects of the heavy metals.


Subject(s)
Metallothionein/genetics , Poisoning/blood , Poisoning/genetics , Polymorphism, Single Nucleotide/genetics , Adenine Nucleotides/blood , Adenine Nucleotides/genetics , Adolescent , Adult , Aged , Cadmium/blood , Cadmium/toxicity , Copper/blood , Copper/toxicity , Female , Genetic Markers/genetics , Genotype , Guanine Nucleotides/blood , Guanine Nucleotides/genetics , Heavy Metal Poisoning , Humans , Lead/blood , Lead/toxicity , Male , Metallothionein/blood , Metals, Heavy/blood , Middle Aged , Promoter Regions, Genetic , Young Adult , Zinc/blood , Zinc/toxicity
13.
Genetics ; 187(1): 105-22, 2011 Jan.
Article in English | MEDLINE | ID: mdl-20980241

ABSTRACT

Purine nucleotides are structural components of the genetic material, function as phosphate donors, participate in cellular signaling, are cofactors in enzymatic reactions, and constitute the main carriers of cellular energy. Thus, imbalances in A/G nucleotide biosynthesis affect nearly the whole cellular metabolism and must be tightly regulated. We have identified a substitution mutation (G388D) that reduces the activity of the GMP synthase Gua1 in budding yeast and the total G-nucleotide pool, leading to precipitous reductions in the GDP/GTP ratio and ATP level in vivo. gua1-G388D strongly reduces the rate of growth, impairs general protein synthesis, and derepresses translation of GCN4 mRNA, encoding a transcriptional activator of diverse amino acid biosynthetic enzymes. Although processing of pre-tRNA(i)(Met) and other tRNA precursors, and the aminoacylation of tRNA(i)(Met) are also strongly impaired in gua1-G388D cells, tRNA(i)(Met)-containing complexes with the macromolecular composition of the eIF2·tRNA(i)(Met.)GTP complex (TC) and the multifactor complex (MFC) required for translation initiation accumulate ∼10-fold in gua1-G388D cells and, to a lesser extent, in wild-type (WT) cells treated with 6-azauracil (6AU). Consistently, addition of an external supply of guanine reverts all the phenotypes of gua1-G388D cells, but not those of gua1-G388D Δhpt1 mutants unable to refill the internal GMP pool through the salvage pathway. These and other findings suggest that a defect in guanine nucleotide biosynthesis evokes a reduction in the rate of general protein synthesis by impairing multiple steps of the process, disrupts the gene-specific reinitiation mechanism for translation of GCN4 mRNA and has far-reaching effects in cell biology and metabolism.


Subject(s)
Basic-Leucine Zipper Transcription Factors/biosynthesis , Guanine Nucleotides/genetics , Guanine Nucleotides/metabolism , Protein Biosynthesis/genetics , Saccharomyces cerevisiae Proteins/biosynthesis , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Alleles , Amino Acid Sequence , Animals , Base Sequence , Basic-Leucine Zipper Transcription Factors/genetics , Carbon-Nitrogen Ligases/chemistry , Carbon-Nitrogen Ligases/genetics , Carbon-Nitrogen Ligases/metabolism , Cloning, Molecular , Eukaryotic Initiation Factor-2/metabolism , Guanosine Monophosphate/biosynthesis , Guanosine Triphosphate/metabolism , Humans , Molecular Sequence Data , Mutation , RNA, Transfer/biosynthesis , RNA, Transfer/metabolism , Ribosome Subunits/metabolism , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae Proteins/genetics , Transfer RNA Aminoacylation
14.
Prostate ; 70(6): 584-90, 2010 May 01.
Article in English | MEDLINE | ID: mdl-19938041

ABSTRACT

BACKGROUND: To examine whether androgen receptor (AR) CAG repeat length was associated with the risk of incident benign prostatic hyperplasia (BPH). METHODS: A nested case-control study of 416 BPH cases and 527 controls drawn from Prostate Cancer Prevention Trial placebo-arm participants who were free of BPH at baseline. BPH was assessed over 7 years and was defined as receipt of medical or surgical treatment, two scores > 14 on the International Prostate Symptom Score (IPSS), or two increases in IPSS > or = 5 with at least one score > or = 12. RESULTS: Compared to men with AR repeat length < or = 19, the covariate-adjusted odds ratios [95% CI] were 1.07 [0.73, 1.57] and 0.90 [0.55, 1.45]) for repeat length 20-24 and > or =25, respectively. There was a weak association of AR repeat length with baseline serum testosterone (T) (Spearman r = 0.09, p < 0.02); however, control for or stratification by T did not change study results. Further, results did not differ when stratified by body mass index or baseline concentration of 3alpha-diol glucoronide, and were similar for all BPH definitions. CONCLUSIONS: There were no associations of AR CAG repeat length and BPH risk. Knowledge of AR CAG repeat length provides no clinical useful information for the prevention of symptomatic BPH.


Subject(s)
Genetic Predisposition to Disease/genetics , Prostatic Hyperplasia/genetics , Receptors, Androgen/genetics , Trinucleotide Repeats/genetics , Adenine Nucleotides/genetics , Aged , Aged, 80 and over , Case-Control Studies , Cytosine Nucleotides/genetics , Guanine Nucleotides/genetics , Humans , Incidence , Male , Middle Aged , Obesity/genetics , Prostatic Hyperplasia/epidemiology , Risk Factors , Testosterone/blood
15.
J Biol ; 8(11): 96, 2009.
Article in English | MEDLINE | ID: mdl-20067596

ABSTRACT

The role of genomic sequence in directing the packaging of eukaryotic genomes into chromatin has been the subject of considerable recent debate. A new paper from Tillo and Hughes shows that the intrinsic thermodynamic preference of a given sequence in the yeast genome for the histone octamer can largely be captured with a simple model, and in fact is mostly explained by %GC. Thus, the rules for predicting nucleosome occupancy from genomic sequence are much less complicated than has been claimed. See research article http://www.biomedcentral.com/1471-2105/10/442.


Subject(s)
Chromatin/genetics , Computational Biology , Nucleosomes/genetics , Animals , Base Composition/genetics , Base Sequence/genetics , Computational Biology/methods , CpG Islands/genetics , Cytosine Nucleotides/genetics , Guanine Nucleotides/genetics , Humans , Predictive Value of Tests
16.
Br J Clin Pharmacol ; 66(4): 517-28, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18662289

ABSTRACT

AIMS: To examine the allelic variation of three enzymes involved in 6-mercaptopurine/azathioprine (6-MP/AZA) metabolism and evaluate the influence of these polymorphisms on toxicity, haematological parameters and metabolite levels in patients with acute lymphoblastic leukaemia (ALL) or inflammatory bowel disease (IBD). METHODS: Clinical data and blood samples were collected from 19 ALL paediatric patients and 35 IBD patients who were receiving 6-MP/AZA therapy. All patients were screened for seven genetic polymorphisms in three enzymes involved in mercaptopurine metabolism [xanthine oxidase, inosine triphosphatase (C94-->A and IVS2+21A-->C) and thiopurine methyltransferase]. Erythrocyte and plasma metabolite concentrations were also determined. The associations between the various genotypes and myelotoxicity, haematological parameters and metabolite concentrations were determined. RESULTS: Thiopurine methyltransferase variant alleles were associated with a preferential metabolism away from 6-methylmercaptopurine nucleotides (P = 0.008 in ALL patients, P = 0.038 in IBD patients) favouring 6-thioguanine nucleotides (6-TGNs) (P = 0.021 in ALL patients). Interestingly, carriers of inosine triphosphatase IVS2+21A-->C variants among ALL and IBD patients had significantly higher concentrations of the active cytotoxic metabolites, 6-TGNs (P = 0.008 in ALL patients, P = 0.047 in IBD patients). The study confirmed the association of thiopurine methyltransferase heterozygosity with leucopenia and neutropenia in ALL patients and reported a significant association between inosine triphosphatase IVS2+21A-->C variants with thrombocytopenia (P = 0.012). CONCLUSIONS; Pharmacogenetic polymorphisms in the 6-MP pathway may help identify patients at risk for associated toxicities and may serve as a guide for dose individualization.


Subject(s)
Antimetabolites, Antineoplastic/therapeutic use , Azathioprine/therapeutic use , Inflammatory Bowel Diseases/drug therapy , Mercaptopurine/therapeutic use , Methyltransferases/therapeutic use , Precursor Cell Lymphoblastic Leukemia-Lymphoma/drug therapy , Adolescent , Antimetabolites, Antineoplastic/immunology , Antimetabolites, Antineoplastic/metabolism , Azathioprine/immunology , Azathioprine/metabolism , Child , Child, Preschool , Female , Gene Frequency/genetics , Genotype , Guanine Nucleotides/genetics , Guanine Nucleotides/metabolism , Humans , Inflammatory Bowel Diseases/enzymology , Male , Mercaptopurine/immunology , Mercaptopurine/metabolism , Methyltransferases/immunology , Methyltransferases/metabolism , Pharmacogenetics/methods , Polymorphism, Genetic/genetics , Precursor Cell Lymphoblastic Leukemia-Lymphoma/enzymology , Thionucleotides/metabolism , Treatment Outcome
17.
Hum Genet ; 123(5): 477-84, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18414898

ABSTRACT

Susceptibility to infectious diseases is influenced by genetic background and efficient cellular immune activation is responsible for protection. In tuberculosis (TB), interferon-gamma (IFNgamma) is crucial to control intracellular growth of Mycobacterium tuberculosis while interleukin-10 (IL-10) has an antagonistic role. Tumor necrosis factor (TNF) is a central mediator of granuloma formation and control of bacilli spread synergizing with IFNgamma to hamper M. tuberculosis infection. Single nucleotide polymorphisms (SNPs) located at these genes could influence cytokine levels and regulate resistance and susceptibility to TB. The aim of this study was to determine the association of the interferon-gamma gene (IFNG) +874T/A, interleukin-10 gene (IL10) -1082G/A and tumor necrosis factor gene (TNF) -308G/A SNPs with TB in several populations using meta-analysis. We searched for association studies correlating these polymorphisms and TB using pre-established keywords in Medline. Meta-analysis was conducted with random effects models to account for heterogeneity between studies. Eleven studies were included in the IFNG +874T/A meta-analysis, while eight were used for the IL10 -1082G/A, and 10 were employed for TNF -308G/A. Data were analyzed in respect to associations between alleles, genotypes and minor allele carriers. Statistically significant results were found only for IFNG. The +874T allele of IFNG showed a protective significant association (OR = 0.75; 95% CI, 0.634-0.887; P = 0.0008). Though not significant, IL10 presented a trend towards protection when only studies with pulmonary TB patients were considered. This data reinforces the critical importance of IFNG +874T/A as a genetic marker for TB resistance and this information can be used for better design of a TB vaccine.


Subject(s)
Genetic Predisposition to Disease , Interferon-gamma/genetics , Interleukin-10/genetics , Polymorphism, Single Nucleotide , Tuberculosis, Pulmonary/genetics , Tumor Necrosis Factor-alpha/genetics , Adenine Nucleotides/genetics , Genetic Markers , Guanine Nucleotides/genetics , Humans , Models, Genetic , Thymine Nucleotides/genetics , Tuberculosis, Pulmonary/immunology
18.
J Allergy Clin Immunol ; 121(4): 1006-1012.e2, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18234320

ABSTRACT

BACKGROUND: Plasminogen activator inhibitor (PAI)-1 is a key regulator of the fibrinolytic system. PAI-1 levels are markedly elevated in the asthmatic airways. The 4G/5G polymorphism of the PAI-1 gene is associated with allergic asthma. OBJECTIVE: To characterize the mechanisms of the 4G/5G-dependent PAI-1 expression in mast cells (MCs), a major source of PAI-1 and key effector cells in asthma. METHODS: Transcription of PAI-1 was assessed by transiently transfecting human MC line (HMC-1) cells with the luciferase-tagged PAI-1 promoters containing the 4G or 5G allele (4G-PAI-1 or 5G-PAI-1 promoter). Upstream stimulatory factor (USF)-1 and the E-box interactions were studied by electrophoretic mobility shift assays and supershift assays. Expression of USF-1 was determined by Western blot analysis. RESULTS: The 4G-PAI-1 promoter has higher promoter activity than the 5G-PAI-1 promoter in stimulated HMC-1 cells, and the E-box adjacent to the 4G/5G site (E-4G/5G) regulates the genotype-specific PAI-1 transcription. USF-1 binds to the E-4G with greater affinity than to the E-5G. USF-1 level is increased in HMC-1 cells after stimulation, and elevated USF-1 enhances PAI-1 transcription. Overexpression of wild-type USF-1 or dominant-negative USF remedies the 4G/5G-dependent PAI-1 transcription. CONCLUSION: Binding of USF-1 to the E-4G/5G regulates the 4G/5G polymorphism-dependent PAI-1 expression in MCs.


Subject(s)
Alleles , E-Box Elements/physiology , Guanine Nucleotides/genetics , Mast Cells/metabolism , Plasminogen Activator Inhibitor 1/biosynthesis , Plasminogen Activator Inhibitor 1/genetics , Polymorphism, Genetic/physiology , Upstream Stimulatory Factors/metabolism , Asthma/genetics , Asthma/metabolism , Asthma/pathology , Cell Line , E-Box Elements/genetics , Guanine Nucleotides/metabolism , Humans , Mast Cells/immunology , Plasminogen Activator Inhibitor 1/metabolism , Protein Binding/genetics , Up-Regulation/genetics , Upstream Stimulatory Factors/biosynthesis , Upstream Stimulatory Factors/genetics
19.
J Neurol Neurosurg Psychiatry ; 79(2): 209-11, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18202211

ABSTRACT

BACKGROUND: Causes of death of patients with the 3243A>G mutation have been described in case reports or case series with a limited number of subjects. METHODS: Eighty-two maternally related sibships of 11 families with 3243A>G were included in this survey. The lifespan of each subject in these families was compared with the life expectancy of the general population, adjusted with respect to year of birth and gender. Causes of death were determined among 3243A>G carriers and their first-degree maternal relatives. RESULTS: We identified 123 deceased subjects in families with 3243A>G and found an excess mortality during the early years of life and young adulthood. The median age at death for 3243A>G carriers and their first-degree maternal relatives was significantly lower than that of the general population. Neurological and cardiovascular diseases made up one-third of the causes of death. Sudden and unexpected death was not uncommon in patients with cardiovascular diseases, diabetes and epilepsy. CONCLUSIONS: 3243A>G carriers and their first-degree maternal relatives died younger than was predicted by their life expectancy at birth. Neurological disease was the most common cause of death.


Subject(s)
Adenine Nucleotides/genetics , Cause of Death , Guanine Nucleotides/genetics , Mitochondrial Diseases/mortality , Mitochondrial Proteins/genetics , Phenotype , RNA, Transfer, Amino Acyl/genetics , Adolescent , Adult , Base Sequence , Cardiomyopathies/genetics , Cardiomyopathies/mortality , Child , Child, Preschool , DNA Mutational Analysis , DNA, Mitochondrial/genetics , Death, Sudden/epidemiology , Diabetes Mellitus/genetics , Diabetes Mellitus/mortality , Female , Finland , Genetic Carrier Screening , Heart Failure/mortality , Humans , Infant , Infant, Newborn , Kaplan-Meier Estimate , Life Expectancy , Male , Mitochondrial Diseases/diagnosis , Mitochondrial Diseases/genetics , Nervous System Diseases/genetics , Nervous System Diseases/mortality , Status Epilepticus/genetics , Survival Analysis
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