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1.
Molecules ; 29(17)2024 Aug 26.
Article in English | MEDLINE | ID: mdl-39274888

ABSTRACT

Glycosaminoglycans (GAGs) play a key role in a variety of biological processes in the extracellular matrix (ECM) via interactions with their protein targets. Due to their high flexibility, periodicity and electrostatics-driven interactions, GAG-containing complexes are very challenging to characterize both experimentally and in silico. In this study, we, for the first time, systematically analyzed the interactions of endostatin, a proteolytic fragment of collagen XVIII known to be anti-angiogenic and anti-tumoral, with heparin (HP) and representative heparan sulfate (HS) oligosaccharides of various lengths, sequences and sulfation patterns. We first used conventional molecular docking and a docking approach based on a repulsive scaling-replica exchange molecular dynamics technique, as well as unbiased molecular dynamic simulations, to obtain dynamically stable GAG binding poses. Then, the corresponding free energies of binding were calculated and the amino acid residues that contribute the most to GAG binding were identified. We also investigated the potential influence of Zn2+ on endostatin-HP complexes using computational approaches. These data provide new atomistic details of the molecular mechanism of HP's binding to endostatin, which will contribute to a better understanding of its interplay with proteoglycans at the cell surface and in the extracellular matrix.


Subject(s)
Endostatins , Heparitin Sulfate , Molecular Docking Simulation , Molecular Dynamics Simulation , Protein Binding , Endostatins/chemistry , Endostatins/metabolism , Heparitin Sulfate/chemistry , Heparitin Sulfate/metabolism , Humans , Heparin/chemistry , Heparin/metabolism , Collagen Type XVIII/chemistry , Collagen Type XVIII/metabolism , Binding Sites , Zinc/chemistry , Zinc/metabolism , Models, Molecular , Glycosaminoglycans/chemistry , Glycosaminoglycans/metabolism , Thermodynamics
2.
ACS Appl Mater Interfaces ; 16(37): 49013-49029, 2024 Sep 18.
Article in English | MEDLINE | ID: mdl-39231128

ABSTRACT

Heparan sulfate (HS) is a major component of cell surface glycocalyx with extensive negative charges and plays a protective role by preventing toxins, including small molecule drugs and anticancer cationic lytic peptides (ACLPs), from cells. However, this effect may compromise the treatment efficiency of anticancer drugs. To overcome the impedance of cancer cell glycocalyx, an HS-targeting ACLP PTP-7z was designed by fusion of an ACLP and a Zn2+-binding HS-targeting peptide. Upon Zn2+ ion binding, PTP-7z could self-assemble into uniform nanoparticles and show improved serum stability and reduced hemolysis, which enable it to self-deliver to tumor sites. The peptide PTP-7z showed a pH- and Zn2+ ion-dependent HS-binding ability, which triggers the HS-induced in situ self-assembling on the cancer cell surface in the acidic tumor microenvironment (TME). The self-assembled PTP-7z can overcome the impedance of cell glycocalyx by either disrupting cell membranes or translocating into cells through endocytosis and inducing cell apoptosis. Moreover, PTP-7z can also inhibit cancer cell migration. These results proved that HS-responsive in situ self-assembling is a practical strategy to overcome the cancer cell glycocalyx barrier for ACLPs and could be extended to the design of other peptide drugs to promote their in vivo application.


Subject(s)
Antineoplastic Agents , Glycocalyx , Heparitin Sulfate , Peptides , Heparitin Sulfate/chemistry , Heparitin Sulfate/pharmacology , Glycocalyx/metabolism , Glycocalyx/chemistry , Humans , Peptides/chemistry , Peptides/pharmacology , Animals , Antineoplastic Agents/pharmacology , Antineoplastic Agents/chemistry , Neoplasms/drug therapy , Neoplasms/pathology , Neoplasms/metabolism , Mice , Apoptosis/drug effects , Cell Line, Tumor , Cell Movement/drug effects , Tumor Microenvironment/drug effects , Nanoparticles/chemistry
3.
Biomolecules ; 14(9)2024 Aug 25.
Article in English | MEDLINE | ID: mdl-39334821

ABSTRACT

Researchers are paying increasing attention to the strongly negatively charged heteropolysaccharides in cells, in the extracellular matrix or in the cell wall. Examples of such molecules are glycosaminoglycans (e.g., heparin, heparan sulphate). It is well known from the literature that heparin and its derivatives have anti-inflammatory, angiogenic, metastatic and growth factor inhibitory activity. Herein, we present the efficient synthesis of six non-glycosaminoglycan (Glc-GlcA-Glc-sequenced) and one heparin-related (GlcN-GlcA-Glc-sequenced) trisaccharides with various functional group patterns. The anti-inflammatory, antioxidant and cell growth-inhibitory/cytotoxic effects of the synthesized compounds were tested. Among the investigated molecules, we have found some derivatives with a promising anti-inflammatory and antioxidant effect.


Subject(s)
Antioxidants , Heparin , Heparitin Sulfate , Trisaccharides , Heparitin Sulfate/chemistry , Heparin/chemistry , Heparin/pharmacology , Heparin/chemical synthesis , Humans , Trisaccharides/chemistry , Trisaccharides/pharmacology , Trisaccharides/chemical synthesis , Antioxidants/pharmacology , Antioxidants/chemical synthesis , Antioxidants/chemistry , Anti-Inflammatory Agents/pharmacology , Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/chemical synthesis , Animals , Mice
4.
ACS Biomater Sci Eng ; 10(9): 5739-5751, 2024 Sep 09.
Article in English | MEDLINE | ID: mdl-39187752

ABSTRACT

The increasing cost of high-volume cultures and dependence on serum and growth factor supplementation limit the affordability of mesenchymal stromal cell (MSC) therapies. This has spurred interest in developing strategies that support adherent cell expansion while reducing raw material costs. Culture surfaces coated with sulfated glycosaminoglycans (GAGs), specifically heparan sulfate (HS), are an alternative to prolong growth factor retention in cell cultures. Unlike heparin, recombinant HS (rHS) offers strong binding affinity for multiple growth factors and extracellular matrix components, such as collagen I, without undesirable anticoagulant effects or xenobiotic health risks. The potential of rHS as a factor reservoir in MSC cultures remains underexplored. This study investigated the impact of rHS on the growth and anti-inflammatory properties of undifferentiated bone marrow MSCs in both planar and microcarrier-based cultures. It was hypothesized that rHS would enable MSC growth with minimal growth factor supplementation in a sulfation level-dependent manner. Cell culture surfaces were assembled via the layer-by-layer (LbL) method, combining alternating collagen I (COL) and rHS. These bilayers support cell adhesion and enable the incorporation of distinct sulfation levels on the culture surface. Examination of pro-mitogenic FGF and immunostimulatory IFN-γ release dynamics confirmed prolonged availability and sulfate level dependencies. Sulfated surfaces supported cell growth in low serum (2% FBS) and serum-free (SF) media at levels equivalent to standard culture conditions. Cell growth on rHS-coated surfaces in SF was comparable to that on heparin-coated surfaces and commercial surface-coated microcarriers in low serum. These growth benefits were observed in both planar and microcarrier (µCs) cultures. Additionally, rHS surfaces reduced ß-galactosidase expression relative to uncoated surfaces, delaying cell senescence. Multivariate analysis of cytokines in conditioned media indicated that rHS-containing surfaces enhanced cytokine levels relative to uncoated surfaces during IFN-γ stimulation and correlated with decreased pro-inflammatory macrophage activity. Overall, utilizing highly sulfated rHS with COL reduces the need for exogenous growth factors and effectively supports MSC growth and anti-inflammatory potency on planar and microcarrier surfaces under minimal factor supplementation.


Subject(s)
Heparitin Sulfate , Mesenchymal Stem Cells , Mesenchymal Stem Cells/cytology , Mesenchymal Stem Cells/metabolism , Mesenchymal Stem Cells/drug effects , Heparitin Sulfate/chemistry , Heparitin Sulfate/pharmacology , Heparitin Sulfate/metabolism , Humans , Cell Culture Techniques/methods , Cell Proliferation/drug effects , Cells, Cultured , Cell Adhesion/drug effects , Collagen/chemistry , Collagen/pharmacology , Collagen/metabolism , Culture Media, Serum-Free/chemistry , Animals , Surface Properties
5.
Phys Chem Chem Phys ; 26(32): 21888-21904, 2024 Aug 14.
Article in English | MEDLINE | ID: mdl-39105690

ABSTRACT

The sulfation pattern and epimerization of the long-chain sulfated polysaccharide heparan sulfate (HS) cause structural diversity and regulate various physiological and pathological processes when binding with proteins. In this work, we performed a series of molecular dynamics simulations of three variants of the octadecasaccharide HS with varying sulfation positions in aqueous medium in their free forms and in the presence of the chemokine CXCL8 dimer. The free energy of binding depicts the sulfation at the 6-O position of GlcNAc (HS6S), and both 3-O and 6-O positions of GlcNAc (HS3S6S) of HS variants are more likely to bind with the CXCL8 dimer than the triply sulfated HS2S3S6S, which is sulfated at the 2-O position of GlcUA additionally along with 3-O and 6-O positions of GlcNAc. Binding between HS and CXCL8 was driven by electrostatic and van der Waals interactions predominantly regardless of the sulfation pattern; however, unfavorable entropic contribution suppressed the interaction between HS and CXCL8. The contribution of different amino acid residues to the binding energetics suggested that basic amino acids line up the binding site of CXCL8. This study further acknowledges the role of interfacial water that is structured and bound with HS through hydrogen bonds, exhibiting differential hydrogen bond relaxation dynamics compared to when the HS molecules are free. Moreover, this study identifies that with the increase in sulfation, the HS-water hydrogen bond relaxation occurs faster with the complexation, while the reverse trend is followed in their free forms. Significant structural adaptation of the different sulfated HS molecules, as verified from the free energy landscapes generated from various reaction coordinates, root-mean-square-deviations, end-to-end distances, including ring pucker angles, dihedral flexibility, and the high conformational entropy cost arising from the glycosidic bonds, suggests that the different sulfated variants of HS undergo significant structural transformation to bind with CXCL8. The presence of a CXCL8 dimer imposes the bound forms of HS to adopt non-linear structures with skew-boat conformations. The atomistic details of the study would help in understanding the selectivity and conformational diversity, as well as the role of solvents in the recognition of CXCL8 by different sulfated variants of HS molecules.


Subject(s)
Heparitin Sulfate , Hydrogen Bonding , Interleukin-8 , Molecular Dynamics Simulation , Water , Heparitin Sulfate/chemistry , Interleukin-8/chemistry , Interleukin-8/metabolism , Water/chemistry , Thermodynamics , Protein Binding , Humans , Protein Multimerization , Binding Sites
6.
Anal Chem ; 96(36): 14413-14423, 2024 Sep 10.
Article in English | MEDLINE | ID: mdl-38989558

ABSTRACT

Heparan sulfate (HS) meshes within the glycocalyx on cell surfaces have protein recognition ability and have been crucial for gaining insights into vital bioprocesses, such as viral infection, cancer development, and inflammation. The protein recognition ability is determined by the mesh property and compositions of HS, although little attention has been paid to the effect of the mesh property on the recognition. An in-depth specificity study of protein-HS-mesh recognition is essential to illustrate related biological functions. Here, ordered porous layer interferometry is applied to study the interaction behavior between mimicked HS meshes and lactoferrin (LF). Our work aimed at mimicking HS meshes with heparin, a widely used substitute of HS, and analyzing the specific LF-heparin-mesh interaction mechanism by inhibiting the nonspecific interaction in a blended sample. We found that the counterion release-based electrostatic interaction is dominant in the specific LF-heparin-mesh recognition. Furthermore, we detail the contributions of nonspecific and specific interactions to the recognition. We illustrate that the concentrated charge distribution of the proteins appears to be primarily related to this robust, specific recognition.


Subject(s)
Heparitin Sulfate , Interferometry , Lactoferrin , Lactoferrin/chemistry , Lactoferrin/metabolism , Heparitin Sulfate/chemistry , Porosity , Heparin/chemistry , Humans , Surface Properties
7.
Glycobiology ; 34(8)2024 06 22.
Article in English | MEDLINE | ID: mdl-38963938

ABSTRACT

Heparan sulfate (HS) is a linear polysaccharide with high structural and functional diversity. Detection and localization of HS in tissues can be performed using single chain variable fragment (scFv) antibodies. Although several anti-HS antibodies recognizing different sulfation motifs have been identified, little is known about their interaction with HS. In this study the interaction between the scFv antibody HS4C3 and heparin was investigated. Heparin-binding lysine and arginine residues were identified using a protect and label methodology. Site-directed mutagenesis was applied to further identify critical heparin-binding lysine/arginine residues using immunohistochemical and biochemical assays. In addition, computational docking of a heparin tetrasaccharide towards a 3-D homology model of HS4C3 was applied to identify potential heparin-binding sites. Of the 12 lysine and 15 arginine residues within the HS4C3 antibody, 6 and 9, respectively, were identified as heparin-binding. Most of these residues are located within one of the complementarity determining regions (CDR) or in their proximity. All basic amino acid residues in the CDR3 region of the heavy chain were involved in binding. Computational docking showed a heparin tetrasaccharide close to these regions. Mutagenesis of heparin-binding residues reduced or altered reactivity towards HS and heparin. Identification of heparin-binding arginine and lysine residues in HS4C3 allows for better understanding of the interaction with HS and creates a framework to rationally design antibodies targeting specific HS motifs.


Subject(s)
Heparin , Heparitin Sulfate , Heparitin Sulfate/chemistry , Heparitin Sulfate/immunology , Heparitin Sulfate/metabolism , Heparin/chemistry , Heparin/metabolism , Molecular Docking Simulation , Single-Chain Antibodies/chemistry , Single-Chain Antibodies/immunology , Single-Chain Antibodies/genetics , Humans , Animals , Mutagenesis, Site-Directed , Binding Sites , Amino Acid Sequence
8.
Glycobiology ; 34(7)2024 05 26.
Article in English | MEDLINE | ID: mdl-38836441

ABSTRACT

Heparan sulfate (HS), a sulfated polysaccharide abundant in the extracellular matrix, plays pivotal roles in various physiological and pathological processes by interacting with proteins. Investigating the binding selectivity of HS oligosaccharides to target proteins is essential, but the exhaustive inclusion of all possible oligosaccharides in microarray experiments is impractical. To address this challenge, we present a hybrid pipeline that integrates microarray and in silico techniques to design oligosaccharides with desired protein affinity. Using fibroblast growth factor 2 (FGF2) as a model protein, we assembled an in-house dataset of HS oligosaccharides on microarrays and developed two structural representations: a standard representation with all atoms explicit and a simplified representation with disaccharide units as "quasi-atoms." Predictive Quantitative Structure-Activity Relationship (QSAR) models for FGF2 affinity were developed using the Random Forest (RF) algorithm. The resulting models, considering the applicability domain, demonstrated high predictivity, with a correct classification rate of 0.81-0.80 and improved positive predictive values (PPV) up to 0.95. Virtual screening of 40 new oligosaccharides using the simplified model identified 15 computational hits, 11 of which were experimentally validated for high FGF2 affinity. This hybrid approach marks a significant step toward the targeted design of oligosaccharides with desired protein interactions, providing a foundation for broader applications in glycobiology.


Subject(s)
Fibroblast Growth Factor 2 , Heparitin Sulfate , Heparitin Sulfate/chemistry , Heparitin Sulfate/metabolism , Fibroblast Growth Factor 2/chemistry , Fibroblast Growth Factor 2/metabolism , Quantitative Structure-Activity Relationship , Microarray Analysis , Oligosaccharides/chemistry , Oligosaccharides/metabolism , Protein Binding , Humans , Models, Molecular
9.
Carbohydr Polym ; 341: 122297, 2024 Oct 01.
Article in English | MEDLINE | ID: mdl-38876729

ABSTRACT

The biological activities of heparan sulfate (HS) are intimately related to their molecular weights, degree and pattern of sulfation and homogeneity. The existing methods for synthesizing homogeneous sugar chains of low dispersity involve multiple steps and require stepwise isolation and purification processes. Here, we designed a mesoporous metal-organic capsule for the encapsulation of glycosyltransferase and obtained a microreactor capable of enzymatically catalyzing polymerization reactions to prepare homogeneous heparosan of low dispersity, the precursor of HS and heparin. Since the sugar chain extension occurs in the pores of the microreactor, low molecular weight heparosan can be synthesized through space-restricted catalysis. Moreover, the glycosylation co-product, uridine diphosphate (UDP), can be chelated with the exposed metal sites of the metal-organic capsule, which inhibits trans-cleavage to reduce the molecular weight dispersity. This microreactor offers the advantages of efficiency, reusability, and obviates the need for stepwise isolation and purification processes. Using the synthesized heparosan, we further successfully prepared homogeneous 6-O-sulfated HS of low dispersity with a molecular weight of approximately 6 kDa and a polydispersity index (PDI) of 1.032. Notably, the HS generated exhibited minimal anticoagulant activity, and its binding affinity to fibroblast growth factor 1 was comparable to that of low molecular weight heparins.


Subject(s)
Heparitin Sulfate , Polymerization , Heparitin Sulfate/chemistry , Anticoagulants/chemistry , Anticoagulants/pharmacology , Anticoagulants/chemical synthesis , Molecular Weight , Porosity , Humans , Disaccharides/chemistry , Glycosyltransferases/metabolism , Glycosyltransferases/chemistry
10.
Carbohydr Polym ; 341: 122294, 2024 Oct 01.
Article in English | MEDLINE | ID: mdl-38876708

ABSTRACT

The role of glycosaminoglycans (GAGs) in modulating bone morphogenetic protein (BMP) signaling represents a recent and underexplored area. Conflicting reports suggest a dual effect: some indicate a positive influence, while others demonstrate a negative impact. This duality suggests that the localization of GAGs (either at the cell surface or within the extracellular matrix) or the specific type of GAG may dictate their signaling role. The precise sulfation patterns of heparan sulfate (HS) responsible for BMP2 binding remain elusive. BMP2 exhibits a preference for binding to HS over other GAGs. Using well-characterized biomaterials mimicking the extracellular matrix, our research reveals that HS promotes BMP2 signaling in the extracellular space, contrary to chondroitin sulfate (CS), which enhances BMP2 bioactivity at the cell surface. Further observations indicate that a central IdoA (2S)-GlcNS (6S) tri-sulfated motif within HS hexasaccharides enhances binding. Nevertheless, BMP2 exhibits a degree of adaptability to various HS sulfation types and sequences. Molecular dynamic simulations attribute this adaptability to the BMP2 N-terminal end flexibility. Our findings illustrate the complex interplay between GAGs and BMP signaling, highlighting the importance of localization and specific sulfation patterns. This understanding has implications for the development of biomaterials with tailored properties for therapeutic applications targeting BMP signaling pathways.


Subject(s)
Bone Morphogenetic Protein 2 , Glycosaminoglycans , Heparitin Sulfate , Signal Transduction , Bone Morphogenetic Protein 2/metabolism , Heparitin Sulfate/metabolism , Heparitin Sulfate/chemistry , Humans , Glycosaminoglycans/metabolism , Glycosaminoglycans/chemistry , Chondroitin Sulfates/chemistry , Chondroitin Sulfates/metabolism , Molecular Dynamics Simulation , Animals , Protein Binding
11.
ACS Appl Bio Mater ; 7(5): 2862-2871, 2024 05 20.
Article in English | MEDLINE | ID: mdl-38699864

ABSTRACT

Mosquito-borne viruses are a major worldwide health problem associated with high morbidity and mortality rates and significant impacts on national healthcare budgets. The development of antiviral drugs for both the treatment and prophylaxis of these diseases is thus of considerable importance. To address the need for therapeutics with antiviral activity, a library of heparan sulfate mimetic polymers was screened against dengue virus (DENV), Yellow fever virus (YFV), Zika virus (ZIKV), and Ross River virus (RRV). The polymers were prepared by RAFT polymerization of various acidic monomers with a target MW of 20 kDa (average Mn ∼ 27 kDa by GPC). Among the polymers, poly(SS), a homopolymer of sodium styrenesulfonate, was identified as a broad spectrum antiviral with activity against all the tested viruses and particularly potent inhibition of YFV (IC50 = 310 pM). Our results further uncovered that poly(SS) exhibited a robust inhibition of ZIKV infection in both mosquito and human cell lines, which points out the potential functions of poly(SS) in preventing mosquito-borne viruses associated diseases by blocking viral transmission in their mosquito vectors and mitigating viral infection in patients.


Subject(s)
Antiviral Agents , Biomimetics , Flavivirus , Heparitin Sulfate , Mosquito Vectors , Polystyrenes , Ross River virus , Polystyrenes/pharmacology , Polystyrenes/therapeutic use , Heparitin Sulfate/chemistry , Antiviral Agents/pharmacology , Antiviral Agents/therapeutic use , Ross River virus/drug effects , Flavivirus/drug effects , Structure-Activity Relationship , A549 Cells , Humans , Animals , Mosquito Vectors/virology
12.
Biomacromolecules ; 25(6): 3850-3862, 2024 Jun 10.
Article in English | MEDLINE | ID: mdl-38775104

ABSTRACT

Cationic polysaccharides have been extensively studied for drug delivery via the bloodstream, yet few have progressed to clinical use. Endothelial cells lining the blood vessel wall are coated in an anionic extracellular matrix called the glycocalyx. However, we do not fully comprehend the charged polysaccharide interactions with the glycocalyx. We reveal that the cationic polysaccharide poly(acetyl, arginyl) glucosamine (PAAG) exhibits the highest association with the endothelial glycocalyx, followed by dextran (neutral) and hyaluronan (anionic). Furthermore, we demonstrate that PAAG binds heparan sulfate (HS) within the glycocalyx, leading to intracellular accumulation. Using an in vitro glycocalyx model, we demonstrate a charge-based extent of association of polysaccharides with HS. Mechanistically, we observe that PAAG binding to HS occurs via a condensation reaction and functionally protects HS from degradation. Together, this study reveals the interplay between polysaccharide charge properties and interactions with the endothelial cell glycocalyx toward improved delivery system design and application.


Subject(s)
Cations , Extracellular Matrix , Glycocalyx , Heparitin Sulfate , Heparitin Sulfate/chemistry , Heparitin Sulfate/metabolism , Humans , Glycocalyx/metabolism , Glycocalyx/chemistry , Extracellular Matrix/metabolism , Cations/chemistry , Endothelial Cells/metabolism , Human Umbilical Vein Endothelial Cells/metabolism , Hyaluronic Acid/chemistry , Hyaluronic Acid/metabolism , Polysaccharides/chemistry , Polysaccharides/metabolism
13.
Biol Pharm Bull ; 47(5): 1054-1057, 2024.
Article in English | MEDLINE | ID: mdl-38811191

ABSTRACT

Glycosaminoglycans (GAGs), such as heparan sulfate (HS), play essential roles in living organisms. Understanding the functionality of HS and its involvement in disease progression necessitates the sensitive and quantitative detection of HS-derived unsaturated disaccharides. Conventionally, fluorescence derivatization precedes the HPLC analysis of these disaccharides. However, the presence of excess unreacted derivatization reagents can inhibit rapid and sensitive analysis in chromatographic determinations. In this study, we describe analytical methods that use dansylhydrazine as a derivatization agent for the detection and determination of HS-derived unsaturated disaccharides using HPLC. In addition, we have developed a straightforward method for removing excess unreacted reagent using a MonoSpin NH2 column. This method may be employed to remove excess pre-labeling reagents, thereby facilitating the analysis of HS-derived unsaturated disaccharides with satisfactory reproducibility.


Subject(s)
Dansyl Compounds , Disaccharides , Heparitin Sulfate , Chromatography, High Pressure Liquid/methods , Heparitin Sulfate/chemistry , Heparitin Sulfate/analysis , Disaccharides/analysis , Dansyl Compounds/chemistry , Hydrazines/chemistry , Spectrometry, Fluorescence/methods , Fluorescence
14.
Curr Opin Chem Biol ; 80: 102455, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38636446

ABSTRACT

Heparan sulfate (HS) is a linear, sulfated and highly negatively-charged polysaccharide that plays important roles in many biological events. As a member of the glycosaminoglycan (GAG) family, HS is commonly found on mammalian cell surfaces and within the extracellular matrix. The structural complexities of natural HS polysaccharides have hampered the comprehension of their biological functions and structure-activity relationships (SARs). Although the sulfation patterns and backbone structures of HS can be major determinants of their biological activities, obtaining significant amounts of pure HS from natural sources for comprehensive SAR studies is challenging. Chemical and enzyme-based synthesis can aid in the production of structurally well-defined HS oligosaccharides. In this review, we discuss recent innovations enabling the syntheses of large libraries of HS and how these libraries can provide insights into the structural preferences of various HS binding proteins.


Subject(s)
Heparitin Sulfate , Oligosaccharides , Heparitin Sulfate/chemistry , Heparitin Sulfate/chemical synthesis , Structure-Activity Relationship , Oligosaccharides/chemistry , Oligosaccharides/chemical synthesis , Humans , Animals , Small Molecule Libraries/chemical synthesis , Small Molecule Libraries/chemistry , Small Molecule Libraries/pharmacology
15.
Glycoconj J ; 41(2): 163-174, 2024 04.
Article in English | MEDLINE | ID: mdl-38642280

ABSTRACT

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a worldwide COVID-19 pandemic, leading to 6.8 million deaths. Numerous variants have emerged since its outbreak, resulting in its significantly enhanced ability to spread among humans. As with many other viruses, SARS­CoV­2 utilizes heparan sulfate (HS) glycosaminoglycan (GAG) on the surface of host cells to facilitate viral attachment and initiate cellular entry through the ACE2 receptor. Therefore, interfering with virion-HS interactions represents a promising target to develop broad-spectrum antiviral therapeutics. Sulfated glycans derived from marine organisms have been proven to be exceptional reservoirs of naturally existing HS mimetics, which exhibit remarkable therapeutic properties encompassing antiviral/microbial, antitumor, anticoagulant, and anti-inflammatory activities. In the current study, the interactions between the receptor-binding domain (RBD) of S-protein of SARS-CoV-2 (both WT and XBB.1.5 variants) and heparin were applied to assess the inhibitory activity of 10 marine-sourced glycans including three sulfated fucans, three fucosylated chondroitin sulfates and two fucoidans derived from sea cucumbers, sea urchin and seaweed Saccharina japonica, respectively. The inhibitory activity of these marine derived sulfated glycans on the interactions between RBD of S-protein and heparin was evaluated using Surface Plasmon Resonance (SPR). The RBDs of S-proteins from both Omicrion XBB.1.5 and wild-type (WT) were found to bind to heparin, which is a highly sulfated form of HS. All the tested marine-sourced sulfated glycans exhibited strong inhibition of WT and XBB.1.5 S-protein binding to heparin. We believe the study on the molecular interactions between S-proteins and host cell glycosaminoglycans provides valuable insight for the development of marine-sourced, glycan-based inhibitors as potential anti-SARS-CoV-2 agents.


Subject(s)
Heparin , Polysaccharides , SARS-CoV-2 , Spike Glycoprotein, Coronavirus , SARS-CoV-2/drug effects , SARS-CoV-2/metabolism , Heparin/pharmacology , Heparin/chemistry , Heparin/metabolism , Polysaccharides/chemistry , Polysaccharides/pharmacology , Polysaccharides/metabolism , Humans , Spike Glycoprotein, Coronavirus/metabolism , Spike Glycoprotein, Coronavirus/chemistry , Spike Glycoprotein, Coronavirus/genetics , COVID-19/virology , COVID-19/metabolism , Protein Binding , Animals , Antiviral Agents/pharmacology , Antiviral Agents/chemistry , Heparitin Sulfate/metabolism , Heparitin Sulfate/chemistry
16.
Biomacromolecules ; 25(5): 3087-3097, 2024 May 13.
Article in English | MEDLINE | ID: mdl-38584438

ABSTRACT

Heparan sulfate proteoglycans (HSPGs) play a crucial role in regulating cancer growth and migration by mediating interactions with growth factors. In this study, we developed a self-assembling peptide (S1) containing a sulfate group to simulate the contiguous sulfated regions (S-domains) in heparan sulfate for growth factor binding, aiming to sequester growth factors like VEGF. Spectral and structural studies as well as simulation studies suggested that S1 self-assembled into nanostructures similar to the heparan sulfate chains and effectively bound to VEGF. On cancer cell surfaces, S1 self-assemblies sequestered VEGF, leading to a reduction in VEGF levels in the medium, consequently inhibiting cancer cell growth, invasion, and angiogenesis. This study highlights the potential of self-assembling peptides to emulate extracellular matrix functions, offering insights for future cancer therapeutic strategies.


Subject(s)
Neoplasm Invasiveness , Peptides , Vascular Endothelial Growth Factor A , Humans , Vascular Endothelial Growth Factor A/metabolism , Peptides/chemistry , Peptides/pharmacology , Cell Movement/drug effects , Cell Line, Tumor , Heparitin Sulfate/chemistry , Neoplasms/drug therapy , Neoplasms/pathology , Neoplasms/metabolism , Cell Proliferation/drug effects , Neovascularization, Pathologic/drug therapy
17.
Chem Commun (Camb) ; 60(33): 4495-4498, 2024 Apr 18.
Article in English | MEDLINE | ID: mdl-38567462

ABSTRACT

We have demonstrated that cisplatin (CP), an anticancer drug, showed a preference for binding the sulfated-L-iduronic acid (S-L-IdoA) unit over the sulfated-D-glucuronic acid unit of heparan sulfate. The multivalency of S-L-IdoA, such as in the proteoglycan mimic, resulted in distinct modes of cell-surface engineering in normal and cancer cells, with these disparities having a significant impact on CP-mediated toxicity.


Subject(s)
Cisplatin , Proteoglycans , Heparitin Sulfate/chemistry , Glucuronic Acid/metabolism , Iduronic Acid , Sulfates
18.
Matrix Biol ; 129: 15-28, 2024 May.
Article in English | MEDLINE | ID: mdl-38548090

ABSTRACT

Cathepsin K (CtsK) is a cysteine protease with potent collagenase activity. CtsK is highly expressed by bone-resorbing osteoclasts and plays an essential role in resorption of bone matrix. Although CtsK is known to bind heparan sulfate (HS), the structural details of the interaction, and how HS regulates the biological functions of CtsK, remains largely unknown. In this report, we discovered that HS is a multifaceted regulator of the structure and function of CtsK. Structurally, HS forms a highly stable complex with CtsK and induces its dimerization. Co-crystal structures of CtsK with bound HS oligosaccharides reveal the location of the HS binding site and suggest how HS may support dimerization. Functionally, HS plays a dual role in regulating the enzymatic activity of CtsK. While it preserves the peptidase activity of CtsK by stabilizing its active conformation, it inhibits the collagenase activity of CtsK in a sulfation level-dependent manner. These opposing effects can be explained by our finding that the HS binding site is remote from the active site, which allows HS to specifically inhibit the collagenase activity without affecting the peptidase activity. At last, we show that structurally defined HS oligosaccharides effectively block osteoclast resorption of bone in vitro without inhibiting osteoclast differentiation, which suggests that HS-based oligosaccharide might be explored as a new class of selective CtsK inhibitor for many diseases involving exaggerated bone resorption.


Subject(s)
Cathepsin K , Collagenases , Heparitin Sulfate , Osteoclasts , Cathepsin K/metabolism , Cathepsin K/antagonists & inhibitors , Cathepsin K/chemistry , Cathepsin K/genetics , Heparitin Sulfate/metabolism , Heparitin Sulfate/chemistry , Collagenases/metabolism , Humans , Animals , Osteoclasts/metabolism , Osteoclasts/drug effects , Binding Sites , Mice , Crystallography, X-Ray , Bone Resorption/metabolism , Bone Resorption/drug therapy , Protein Binding , Catalytic Domain , Models, Molecular , Protein Multimerization
19.
FEBS J ; 291(15): 3331-3366, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38500384

ABSTRACT

Mammalian glycosaminoglycans (GAGs), except hyaluronan (HA), are sulfated polysaccharides that are covalently attached to core proteins to form proteoglycans (PGs). This article summarizes key biological findings for the most widespread GAGs, namely HA, chondroitin sulfate/dermatan sulfate (CS/DS), keratan sulfate (KS), and heparan sulfate (HS). It focuses on the major processes that remain to be deciphered to get a comprehensive view of the mechanisms mediating GAG biological functions. They include the regulation of GAG biosynthesis and postsynthetic modifications in heparin (HP) and HS, the composition, heterogeneity, and function of the tetrasaccharide linkage region and its role in disease, the functional characterization of the new PGs recently identified by glycoproteomics, the selectivity of interactions mediated by GAG chains, the display of GAG chains and PGs at the cell surface and their impact on the availability and activity of soluble ligands, and on their move through the glycocalyx layer to reach their receptors, the human GAG profile in health and disease, the roles of GAGs and particular PGs (syndecans, decorin, and biglycan) involved in cancer, inflammation, and fibrosis, the possible use of GAGs and PGs as disease biomarkers, and the design of inhibitors targeting GAG biosynthetic enzymes and GAG-protein interactions to develop novel therapeutic approaches.


Subject(s)
Glycosaminoglycans , Humans , Glycosaminoglycans/metabolism , Glycosaminoglycans/chemistry , Animals , Heparitin Sulfate/metabolism , Heparitin Sulfate/chemistry , Proteoglycans/metabolism , Dermatan Sulfate/metabolism , Dermatan Sulfate/chemistry , Neoplasms/metabolism , Neoplasms/drug therapy , Neoplasms/pathology , Hyaluronic Acid/metabolism , Hyaluronic Acid/chemistry , Keratan Sulfate/metabolism , Keratan Sulfate/chemistry , Chondroitin Sulfates/metabolism , Chondroitin Sulfates/chemistry
20.
Carbohydr Polym ; 333: 121979, 2024 Jun 01.
Article in English | MEDLINE | ID: mdl-38494232

ABSTRACT

Heparan sulfate (HS) is a glycosaminoglycan (GAG) found throughout nature and is involved in a wide range of functions including modulation of cell signalling via sequestration of growth factors. Current consensus is that the specificity of HS motifs for protein binding are individual for each protein. Given the structural complexity of HS the synthesis of libraries of these compounds to probe this is not trivial. Herein we present the synthesis of an HS decamer, the design of which was undertaken rationally from previously published data for HS binding to the growth factor BMP-2. The biological activity of this HS decamer was assessed in vitro, showing that it had the ability to both bind BMP-2 and increase its thermal stability as well as enhancing the bioactivity of BMP-2 in vitro in C2C12 cells. At the same time no undesired anticoagulant effect was observed. This decamer was then analysed in vivo in a rabbit model where higher bone formation, bone mineral density (BMD) and trabecular thickness were observed over an empty defect or collagen implant alone. This indicated that the HS decamer was effective in promoting bone regeneration in vivo.


Subject(s)
Glycosaminoglycans , Heparitin Sulfate , Animals , Rabbits , Heparitin Sulfate/chemistry , Osteogenesis , Protein Binding , Bone Regeneration , Intercellular Signaling Peptides and Proteins/metabolism
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