Color multilayer holographic near-eye augmented reality display.

This study demonstrates a full-color near-eye holographic display capable of superimposing color virtual scenes with 2D, 3D, and multiple objects with extended depth upon a real scene, which also has the ability to present different 3D information depending on the focus of the user's eyes using a single computer-generated hologram per color channel. Our setup makes use of a hologram generation method based on two-step propagation and the singular value decomposition of the Fresnel transform impulse response function to efficiently generate the holograms of the target scene. Then, we test our proposal by implementing a holographic display that makes use of a phase-only spatial light modulator and time-division multiplexing for color reproduction. We demonstrate the superior quality and computation speed of this approach compared with other hologram generation techniques with both numerical and experimental results.

Estudio histomorfométrico de folículos tiroideos humanos con microscopía holográfica digital / Histomorphometric study of human thyroid follicles by digital holographic microscopy

Introducción: La microscopía holográfica digital ha permitido a la microscopía óptica hacer uso de herramientas numéricas y computacionales; y esto, a su vez, ha favorecido múltiples avances en el estudio de las células y los tejidos en diferentes campos de la medicina y otras ciencias afines. Objetivo: Describir las características histológicas y morfométricas de los folículos tiroideos humanos con la microscopía holográfica digital. Métodos: Se realizó, desde el punto de vista histomorfométrico, un estudio descriptivo y transversal de folículos tiroideos humanos utilizando una instalación de microscopía holográfica digital. Se empleó la técnica de inclusión en parafina y tinción de hematoxilina-eosina para el procesamiento de las muestras. Se realizaron de 10 a 12 capturas de hologramas por muestra y el método de doble propagación para la reconstrucción de los hologramas. Se calculó el área, el perímetro, el diámetro mayor y menor de los folículos y cavidades foliculares y se realizaron reconstrucciones de imágenes holográficas en tres dimensiones. Se determinó como medida de tendencia central la media aritmética y como medida de dispersión la desviación típica o estándar. Resultados: Parámetros foliculares: área (5140,31 ± 1126,71 µm2); perímetro (2961,54 ± 71,2 µm); diámetro mayor:(921,17 ± 24,34 µm); diámetro menor: (746,67 ± 18,08 µm); altura del epitelio (7,92 ± 0,96). Cavidades foliculares: área (3686,18 ±1023,52 µm2); diámetro mayor: (698,86 ± 19,55 µm) y diámetro menor: (581,15 ± 13,82 µm). Conclusiones: Existen parámetros foliculares, determinados mediante la microscopía holográfica digital, no reportados por la literatura consultada, que resultan de interés en el estudio histológico de los folículos tiroideos humanos(AU)

Introduction: Digital holographic microscopy has made it possible to incorporate the use of numerical and computer tools into optical microscopy. This in turn has led to great progress in the study of cells and tissues in several fields of medicine and related sciences. Objective: Describe the histological and morphometric characteristics of human thyroid follicles using digital holographic microscopy. Methods: A descriptive cross-sectional histomorphometric study was conducted of human thyroid follicles using a digital holographic microscopy facility. Sample processing was based on inclusion technique by paraffin and hematoxylin-eosin staining. Ten to twelve holographic captures were made per sample, and the double propagation method was used for holographic reconstruction. Estimation was carried out of the area, perimeter, and greatest and smallest diameter of follicles and follicular cavities, and tri-dimensional reconstructions were made of holographic images. Arithmetic mean was determined as the measure of central tendency, and typical or standard deviation as the measure of dispersion. Results: Follicular parameters: area (5 140.31 ± 1 126.71 µm2); perimeter (2 961.54 ± 71.2 µm); greatest diameter (921.17 ± 24.34 µm); smallest diameter (746.67 ± 18.08 µm); epithelial height (7.92 ± 0.96). Follicular cavities: area (3 686.18 ± 1 023.52 µm2); greatest diameter (698.86 ± 19.55 µm); smallest diameter (581.15 ± 13.82 µm). Conclusions: A number of follicular parameters determined by digital holographic microscopy have not been reported by the literature consulted, and they are of interest to the histological study of human thyroid follicles(AU)

Estudio histomorfométrico de la corteza cerebelosa con microscopia holográfica digital / Histomorphometric study of the cerebellar cortex with digital holographic microscopy

Se realizó un estudio descriptivo y transversal de la corteza cerebelosa humana, desde el punto de vista histomorfométrico, desde enero hasta septiembre del 2015, con el empleo de la microscopia holográfica digital instalada en el Departamento de Holografía Digital de la Universidad de Oriente en Santiago de Cuba, con vistas efectuar mediciones que permitieran establecer comparaciones con otros estudios. Los cálculos mostraron el grosor de las capas molecular y granulosa, el área, el perímetro, los diámetros mayores y menores del cuerpo y el núcleo de las células de Purkinje. Asimismo, se tomaron imágenes holográficas en tres dimensiones, que posibilitaron concluir la existencia de parámetros determinados mediante este procedimiento, los que no habían sido notificados y que resultan de interés en el estudio histológico de la corteza cerebelosa

A descriptive and cross-sectional study of the human cerebellar cortex, from the histomorphometric point of view, was carried out from January to September, 2015, using the digital holographic microscopy installed in the Digital Holography Department of Oriente University in Santiago de Cuba, aimed at making measurings that allowed to establish comparisons with other studies. The calculations showed the thickness of the molecular and granular layers, the area, perimeter, greatest and smallest diameters of the body and Purkinje cells nucleus. Also, holographic images in three dimensions were taken, that facilitated to conclude the existence of certain parameters by means of this procedure, those that had not been notified and are of interest in the histological study of the cerebellar cortex

Studies of Staphylococcus aureus FabI inhibitors: fragment-based approach based on holographic structure-activity relationship analyses.

AIM: FabI is a key enzyme in the fatty acid metabolism of Gram-positive bacteria such as Staphylococcus aureus and is an established drug target for known antibiotics such as triclosan. However, due to increasing antibacterial resistance, there is an urgent demand for new drug discovery. Recently, aminopyridine derivatives have been proposed as promising competitive inhibitors of FabI. METHODS: In the present study, holographic structure-activity relationship (HQSAR) analyses were employed for determining structural contributions of a series containing 105 FabI inhibitors. RESULTS & CONCLUSION: The final HQSAR model was robust and predictive according to statistical validation (q2 and r2pred equal to 0.696 and 0.854, respectively) and could be further employed to generate fragment contribution maps. Then, final HQSAR model together with FabI active site information can be useful for designing novel bioactive ligands.

Ventajas de la microscopia holográfica digital para el estudio de muestras biológicas / Advantages of the digital holographic microscopy for the study of biological samples

Se efectuó una revisión bibliográfica exhaustiva sobre la microscopia holográfica digital y se ofrece una información actualizada sobre esta novedosa técnica de registro óptico en el país, así como de sus fundamentos teóricos y principales aplicaciones en el campo de la biología, para que pueda ser consultada por estudiantes y profesionales de la medicina y ciencias afines, con vistas a promover la realización de futuras investigaciones relacionadas con dicha técnica

An exhaustive literature review on the digital holographic microscopy was carried out and an updated information on this novel technique of optic record, its theoretical foundations and main uses in the field of biology in the country is offered, so that it can be consulted by students and professionals of medicine and similar sciences, aimed at promoting the realization of future investigations related to this technique

Hologram quantitative structure-activity relationship and comparative molecular field analysis studies within a series of tricyclic phthalimide HIV-1 integrase inhibitors.

Acquired immunodeficiency syndrome is a public health problem worldwide caused by the Human immunodeficiency virus (HIV). Treatment with antiretroviral drugs is the best option for viral suppression, reducing morbidity and mortality. However, viral resistance in HIV-1 therapy has been reported. HIV-1 integrase (IN) is an essential enzyme for effective viral replication and an attractive target for the development of new inhibitors. In the study reported here, two- and three-dimensional quantitative structure-activity relationship (2D/3D-QSAR) studies, applying hologram quantitative structure-activity relationship (HQSAR) and comparative molecular field analysis (CoMFA) methods, respectively, were performed on a series of tricyclic phthalimide HIV-1 IN inhibitors. The best HQSAR model (q (2) = 0.802, r (2) = 0.972) was obtained using atoms, bonds, and connectivity as the fragment distinction, a fragment size of 2-5 atoms, hologram length of 61 bins, and six components. The best CoMFA model (q (2) = 0.748, r (2) = 0.974) was obtained with alignment of all atoms of the tricyclic phthalimide moiety (alignment II). The HQSAR contribution map identified that the carbonyl-hydroxy-aromatic nitrogen motif made a positive contribution to the activity of the compounds. Furthermore, CoMFA contour maps suggested that bulky groups in meta and para positions in the phenyl ring would increase the biological activity of this class. The conclusions of this work may lead to a better understanding of HIV-1 IN inhibition and contribute to the design of new and more potent derivatives.

Holographic otoscope using dual-shot-acquisition for the study of eardrum biomechanical displacements.

Recently an optoelectronic holography system was deployed in the clinic with the purpose of quantifying the tympanic membrane (TM) displacements of various mammal species, the objective being the understanding of their middle ear biomechanics. The optoelectronic holography system has an in-line configuration where the data gathered is decoded using lensless digital holography with the Fresnel approximation. This paper presents quantitative data obtained from an acoustically excited postmortem chinchilla's TM. To achieve this we used a robust customized windowed unwrapping method to unwrap the noisy optical phase obtained by subtracting phase maps of two recorded holograms and the results were compared with those obtained when using the unwrapping branch-cut algorithm. Additionally, phase maps obtained by the phase-stepping technique were compared applying both unwrapping methods. For in vivo applications particular emphasis is made on post-processing dual-shot-acquisition of holograms as one of various acquisition strategies and algorithms to diminish measurement error due to heartbeat, breathing, and patient's head motion as well as environment induced mechanical disturbances present in a noncontrolled environment, such as in a clinic. By recording only two holograms representing a stationary and deformed state of eardrum, respectively, we can increase the acquisition speed of the camera used to record faster events happening on the TM surface.

Simultaneous rotation, orientation and displacement control of birefringent microparticles in holographic optical tweezers.

We report the experimental implementation of a new method for generating multiple dynamical optical tweezers, where each one of them is generated with an independent linear polarization state with arbitrary orientation. This also allows an independent simultaneous polarization-rotation control. The laser beam, both for generating multiple traps and polarization control, has been modulated using a single reflective nematic liquid crystal with parallel alignment. We present experimental results of controlled displacement, orientation and rotation of birefringent particles. In addition, a simple method for estimating and canceling out the primary astigmatism present in the system is presented.

Numerical evaluation of the limit of concentration of colloidal samples for their study with digital lensless holographic microscopy.

The number of colloidal particles per unit of volume that can be imaged correctly with digital lensless holographic microscopy (DLHM) is determined numerically. Typical in-line DLHM holograms with controlled concentration are modeled and reconstructed numerically. By quantifying the ratio of the retrieved particles from the reconstructed hologram to the number of the seeding particles in the modeled intensity, the limit of concentration of the colloidal suspensions up to which DLHM can operate successfully is found numerically. A new shadow density parameter for spherical illumination is defined. The limit of performance of DLHM is determined from a graph of the shadow density versus the efficiency of the microscope.

Structural and chemical basis for enhanced affinity to a series of mycobacterial thymidine monophosphate kinase inhibitors: fragment-based QSAR and QM/MM docking studies.

Tuberculosis (TB) still remains one of the most deadly infectious diseases. Mycobacterium tuberculosis thymidine monophosphate kinase (TMPKmt) has emerged as an attractive molecular target for the design of a novel class of anti-TB agents since blocking it will affect the pathways involved in DNA replication. Aiming at shedding some light on structural and chemical features that are important for the affinity of thymidine derivatives to TMPKmt, we have employed a special fragment-based method to develop robust quantitative structure-activity relationship models for a large and chemically diverse series of thymidine-based analogues. Significant statistical parameters (r2= 0.94, q2= 0.76, r2pred= 0.89) were obtained, indicating the reliability of the hologram QSAR model in predicting the biological activity of untested compounds. The 2D model was then used to predict the potency of an external test set, and the predicted values obtained from the HQSAR model were in good agreement with the experimental results. We have accordingly designed novel TMPKmt inhibitors by utilizing the fragments proposed by HQSAR analysis and predicted with good activity in the developed models. The new designed compounds also presented drug-like characteristics based on Lipinski's rule of 5. The generated molecular recognition patterns gathered from the HQSAR analysis combined with quantum mechanics/molecular mechanics (QM/MM) docking studies, provided important insights into the chemical and structural basis involved in the molecular recognition process of this series of thymidine analogues and should be useful for the design of new potent anti-TB agents.

Accuracy and reproducibility of 3-dimensional digital model measurements.

INTRODUCTION: The purpose of this study was to evaluate the reliability of measurements made on 3-dimensional digital models obtained with a surface laser scanner (D-250; 3Shape, Copenhagen, Denmark). METHODS: Twenty orthodontic dental casts of permanent dentitions were selected. Three-dimensional images were obtained on this scanner and analyzed by using the Geomagic Studio 5 software (Raindrop Geomagic, Inc, Morrisville, NC). Measurements were made with a digital caliper directly on the dental casts and also digitally on the digital models. Fifteen anatomic dental points were identified, and a total of 11 linear measurements were taken from each cast, including arch length and width. Dependent t tests were used to evaluate intraexaminer reproducibility and measurement accuracy on the digital models. RESULTS: No statistically significant differences were found between the measurements made directly on the dental casts and on the digital models. CONCLUSIONS: Linear measurements on digital models are accurate and reproducible. Digital models obtained with the surface laser scanner are reliable for measurements of arch width and length.

Hologram QSAR models of 4-[(diethylamino)methyl]-phenol inhibitors of acetyl/butyrylcholinesterase enzymes as potential anti-Alzheimer agents.

Hologram QSAR models were developed for a series of 36 inhibitors (29 training set and seven test set compounds) of acetyl/butyrylcholinesterase (AChE/BChE) enzymes, an attractive molecular target for Alzheimer's disease (AD) treatment. The HQSAR models (N = 29) exhibited significant cross-validated (AChE, q2 = 0.787; BChE, q2 = 0. 904) and non-cross-validated (AChE, r2 = 0.965; BChE, r2= 0.952) correlation coefficients. The models were used to predict the inhibitory potencies of the test set compounds, and agreement between the experimental and predicted values was verified, exhibiting a powerful predictive capability. Contribution maps show that structural fragments containing aromatic moieties and long side chains increase potency. Both the HQSAR models and the contribution maps should be useful for the further design of novel, structurally related cholinesterase inhibitors.

Consensus hologram QSAR modeling for the prediction of human intestinal absorption.

Consistent in silico models for ADME properties are useful tools in early drug discovery. Here, we report the hologram QSAR modeling of human intestinal absorption using a dataset of 638 compounds with experimental data associated. The final validated models are consistent and robust for the consensus prediction of this important pharmacokinetic property and are suitable for virtual screening applications.

3D displacement measurements of the tympanic membrane with digital holographic interferometry.

A digital holographic interferometry (DHI) system with three object-illumination beams is used for the first time to measure micro-deformations along the x, y and z axes (3D) on the tympanic membrane (TM) surface of a post-mortem cat. In order to completely and accurately measure the TM surface displacements its shape is required to map on it the x, y and z micro-deformations. The surface contour is obtained by applying small shifts to the object illumination source position. A cw laser in stroboscopic mode and a CCD camera were used and synchronized to the acoustic excitation wave that produces a resonant vibration mode on the tympanic membrane surface. This research work reports on the 3D full field of view response of the TM to sound pressure, and has as its main goal the presentation of DHI as an alternative technique to study the TM real displacement behavior when subjected to sound waves, so it can be used as a diagnostic tool to prevent and treat TM diseases.

Avaliação in vitro do colar de implantes cone Morse de diferentes diâmetros sob cargas cêntrica e excêntrica: estudo por meio da Interferometria Eletrônica por Padrões de Speckle / In vitro evaluation of the collar of Morse taper dental implants with different diameters under centric and eccentric loads: an electronic speckle pattern interferometry study

Cargas oclusais excessivas podem promover tensões exageradas às estruturas de implantes/pilares/próteses, resultando em deformação, desadaptação ou mesmo fratura dos componentes e do próprio implante. Além disso, tais sobrecargas podem gerar necrose por compressão e perda óssea peri-implantar e, ainda, a ocorrência de microdeslocamentos na interface de conexão implante-pilar (I-P) ocasionando a formação de fendas propícias à colonização bacteriana, o que pode levar ao desenvolvimento de peri-implantite, contribuindo para o insucesso do conjunto. O presente estudo objetivou avaliar, por meio de uma técnica já amplamente utilizada na Engenharia e na Física a Interferometria Eletrônica por Padrões de Speckle (ESPI) as deformações a nível do colar de implantes com conexão cônica interna (cone Morse) de diferentes diâmetros (Kopp 4,3/5,5 mm e Neodent 3,5/5,0 mm), sob dois tipos (cêntrica e excêntrica) e intensidades (50 N e 100 N) de cargas, similares as quais os implantes ficam expostos durante a função mastigatória. Testou-se a hipótese de que a deformação do colar do implante seria inversamente proporcional ao diâmetro do implante. Além disso, discutiu-se vantagens e limitações da técnica ESPI frente a outros métodos comumente utilizados na avaliação de tensões. As maiores deformações foram sempre associadas às cargas excêntricas, com exceção do G1-Kopp. A maior deformação ocorreu no G1-Neodent sob carga excêntrica de 100 N e a menor, no G2-Neodent sob carga cêntrica de 50 N. A técnica ESPI mostrou-se altamente sensível e reprodutível para avaliar deformações a nivel do colar de implantes sendo possível confirmar a hipótese inicial, visto que a maior deformação esteve sempre associada aos implantes de menor diâmetro, em ambos os sistemas de implante pesquisados.

Occlusal overloading may promote excessive stresses to the implants/abutments/prosthesis, resulting in deformation, misfit or fracture of the components, until the implants. Futhermore, strains of the implant-abutment connection can cause the formation of microgaps propitious to bacterial colonization, which leads to the development of peri-implant sites, leading to the failure of the rehabilitation. This study aimed to evaluate, by a technique widely used in the engineering and physics Electronic Speckle Pattern Interferometry (ESPI) the strains related to the implant collar with internal tappered connection (Morse taper) with different diameters (Kopp 4.3/5.5 mm and Neodent 3,5/5,0 mm), under two types (centric and eccentric) and intensities (50 N and 100 N) of loads, similar which implants are exposed during masticatory function. We tested the hypothesis that the strains of the implants collar would be inversely proportional to the diameter of the implant. In addition, the survey discussed the advantages and limitations of the ESPI technique over other methods commonly used to assess strains. The largest strain was always associated with eccentric loads, except for G1-Kopp. The largest strain occurred in the G1-Neodent under the eccentric loads of 100 N and the lowest in the G2-Neodent under the centric loads of 50 N. The ESPI technique was a highly sensitive and reproducible to evaluate the strains at the level of the collar of implants being possible to confirm the initial hypothesis, since most strains was always associated with narrower-diameter implants in both implant systems studied.

Design, construction, and performance of a real-time holographic refractometry prototype for liquid analysis.

The development and the performance of a portable holographic refractometer prototype for liquid measurement employing multimode diode lasers with emission centered at 662 nm as light sources is reported. Due to the multiwavelength character of the holographic recording, a synthetic wavelength was generated, and the diffracted wave intensity was thus modulated as a function of the optical path difference between the reference and the object beams. The transparent test cell containing the liquid was placed at the reference-beam arm of the optical setup, while the contour interferogram generated on the holographic image of a flat object was used for fringe counting. A change ΔL on the liquid column length is proportional to the Δp running fringes on the object image, and from this relation the refractive index of the test liquid was obtained. The holograms were recorded on a photorefractive Bi(12)TiO(20) crystal whether using a single multimode diode laser or by combining two diode lasers. In the latter configuration the synthetic wavelength can be varied in order to enhance the measurement sensitivity and∕or to allow the analysis of turbid liquids. The size of the whole prototype is 54 × 22 × 14 cm(3). The refractive indexes of ethanol∕water mixtures with different concentrations were measured, as well as the NaCl concentrations in aqueous solutions were determined upon comparison with an empirical curve. In both cases the results were compared with the ones obtained through an Abbe refractometer.

Diffractive phase-shift lithography photomask operating in proximity printing mode.

A phase shift proximity printing lithographic mask is designed, manufactured and tested. Its design is based on a Fresnel computer-generated hologram, employing the scalar diffraction theory. The obtained amplitude and phase distributions were mapped into discrete levels. In addition, a coding scheme using sub-cells structure was employed in order to increase the number of discrete levels, thus increasing the degree of freedom in the resulting mask. The mask is fabricated on a fused silica substrate and an amorphous hydrogenated carbon (a:C-H) thin film which act as amplitude modulation agent. The lithographic image is projected onto a resist coated silicon wafer, placed at a distance of 50 microm behind the mask. The results show a improvement of the achieved resolution--linewidth as good as 1.5 microm--what is impossible to obtain with traditional binary masks in proximity printing mode. Such achieved dimensions can be used in the fabrication of MEMS and MOEMS devices. These results are obtained with a UV laser but also with a small arc lamp light source exploring the partial coherence of this source.

Mastication effort study using photorefractive holographic interferometry technique.

The purpose of this work was the force-displacement response analysis of the masticatory process in a dried human skull by Double-Exposure Photorefractive Holographic Interferometry Technique (2E-PRHI). The load concentration and dissipation of the forces from dried human skull were analysed at applied loading stands as a Simulation of Isolated Contraction (SIC) of some mastication muscles. The 2EHI and Fringe Analysis Method were used to obtain the quantitative results of this force-displacement response. These results document quantitatively the real biomechanical response from dried human skull under applied loading and it can be used for complementary study by finite element model and others analysis type.

Three-dimensional facial surface analysis of patients with skeletal malocclusion.

Three-dimensional (3D) laser surface scanning analysis has taken hold in orthodontics, as well as craniomaxillofacial and plastic surgery as a new tool that can navigate away from the limitations of conventional two-dimensional methods. Various techniques for 3D reconstruction of the face have been used in diagnosis, treatment planning and simulation, and outcomes follow-up. The aim of the current prospective study was to present some technical aspects for the assessment of facial changes after orthodontic and orthognathic surgery treatment using 3D laser surface scanning. The technique proposed for facial surface shape analysis represented three-dimensionally the expected surgical changes, and the reduction of the postoperative swelling was verified. This study provides technical information from the data collection to the 3D virtual soft-tissue analysis that can be useful for diagnostic information, treatment planning, future comparisons of treatment stability or facial postoperative swelling, and soft-tissue profile assessment.