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1.
Emerg Infect Dis ; 30(6): 1088-1095, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38781685

ABSTRACT

The characteristics of severe human parainfluenza virus (HPIV)-associated pneumonia in adults have not been well evaluated. We investigated epidemiologic and clinical characteristics of 143 patients with severe HPIV-associated pneumonia during 2010-2019. HPIV was the most common cause (25.2%) of severe virus-associated hospital-acquired pneumonia and the third most common cause (15.7%) of severe virus-associated community-acquired pneumonia. Hematologic malignancy (35.0%), diabetes mellitus (23.8%), and structural lung disease (21.0%) were common underlying conditions. Co-infections occurred in 54.5% of patients admitted to an intensive care unit. The 90-day mortality rate for HPIV-associated pneumonia was comparable to that for severe influenza virus-associated pneumonia (55.2% vs. 48.4%; p = 0.22). Ribavirin treatment was not associated with lower mortality rates. Fungal co-infections were associated with 82.4% of deaths. Clinicians should consider the possibility of pathogenic co-infections in patients with HPIV-associated pneumonia. Contact precautions and environmental cleaning are crucial to prevent HPIV transmission in hospital settings.


Subject(s)
Community-Acquired Infections , Tertiary Care Centers , Humans , Male , Female , Middle Aged , Community-Acquired Infections/epidemiology , Community-Acquired Infections/virology , Republic of Korea/epidemiology , Aged , Adult , Healthcare-Associated Pneumonia/epidemiology , Pneumonia, Viral/epidemiology , Pneumonia, Viral/mortality , Coinfection/epidemiology , Paramyxoviridae Infections/epidemiology , Paramyxoviridae Infections/mortality , History, 21st Century , Cross Infection/epidemiology , Young Adult , Aged, 80 and over
2.
PLoS One ; 16(12): e0259443, 2021.
Article in English | MEDLINE | ID: mdl-34919553

ABSTRACT

The present study was done to identify the viral diversity, seasonality and burden associated with childhood acute respiratory tract infection (ARTI) in Sri Lanka. Nasopharyngeal aspirates (NPA) of hospitalized children (1 month-5 years) with ARTI were collected in 2 centers (wet and dry zones) from March 2013 to August 2014. Respiratory viral antigen detection by immunofluorescence assay (IFA) was used to identify the infecting viruses. IFA negative 100 NPA samples were tested for human metapeumovirus (hMPV), human bocavirus and corona viruses by polymerase chain reaction. Of the 443 and 418 NPAs, 37.2% and 39.4% were positive for any of the 8 different respiratory viruses tested from two centers studied. Viral co-infection was detected with respiratory syncytial virus (RSV) in both centers. Peak viral detection was noted in the wet zone from May-July 2013 and 2014 and in the dry zone from December-January 2014 suggesting a local seasonality for viral ARTI. RSV showed a clear seasonality with a direct correlation of monthly RSV infections with rainy days in the wet zone and an inverse correlation with temperature in both centers. The case fatality rate was 2.7% for RSV associated ARTI. The overall disability adjusted life years was 335.9 and for RSV associated ARTI it was 241.8. RSV was the commonly detected respiratory virus with an annual seasonality and distribution in rainy seasons in the dry and wet zones of Sri Lanka. Identifying the virus and seasonality will contribute to employ preventive measures and reduce the empirical use of antibiotics in resource limited settings.


Subject(s)
Coronavirus Infections/epidemiology , Paramyxoviridae Infections/epidemiology , Parvoviridae Infections/epidemiology , Respiratory Syncytial Virus Infections/epidemiology , Respiratory Tract Infections/epidemiology , Viral Load , Child, Hospitalized , Child, Preschool , Coinfection , Coronavirus/pathogenicity , Coronavirus/physiology , Coronavirus Infections/mortality , Coronavirus Infections/virology , Disability-Adjusted Life Years/trends , Female , Human bocavirus/pathogenicity , Human bocavirus/physiology , Humans , Incidence , Infant , Male , Metapneumovirus/pathogenicity , Metapneumovirus/physiology , Paramyxoviridae Infections/mortality , Paramyxoviridae Infections/virology , Parvoviridae Infections/mortality , Parvoviridae Infections/virology , Respiratory Syncytial Virus Infections/mortality , Respiratory Syncytial Virus Infections/virology , Respiratory Syncytial Virus, Human/pathogenicity , Respiratory Syncytial Virus, Human/physiology , Respiratory Tract Infections/mortality , Respiratory Tract Infections/virology , Seasons , Sri Lanka/epidemiology , Survival Analysis
3.
Infect Genet Evol ; 91: 104809, 2021 07.
Article in English | MEDLINE | ID: mdl-33727141

ABSTRACT

Eurasian collared doves (Streptopelia decaocto) were introduced into Florida in the 1980s and have since established populations throughout the continental United States. Pigeon paramyxovirus-1 (PPMV-1), a species-adapted genotype VI Avian orthoavulavirus 1, has caused periodic outbreaks among collared doves in the U.S. since 2001 with outbreaks occasionally involving native doves. In California, PPMV-1 mortality events were first documented in Riverside County in 2014 with subsequent outbreaks in 23 additional counties from southern to northern California between 2015 and 2019. Affected collared doves exhibited torticollis and partial paralysis. Pale kidneys were frequently visible on gross necropsy (65.4%; 51/78) while lymphoplasmacytic interstitial nephritis often with acute tubular necrosis (96.0%; 24/25) and pancreatic necrosis (80.0%; 20/25) were common findings on histopathology. In total, PPMV-1 was confirmed by rRT-PCR and sequence analysis from oropharyngeal and/or cloacal swabs in 93.0% (40/43) of the collared doves tested from 16 California counties. In 2017, Avian orthoavulavirus 1 was confirmed in a native mourning dove (Zenaida macroura) found dead during a PPMV-1 outbreak in collared doves by rRT-PCR from formalin-fixed paraffin-embedded (FFPE) tissues, after the initial rRT-PCR from swabs failed to detect the virus. Molecular sequencing of the fusion protein of isolates collected from collared doves during outbreaks in 2014, 2016, and 2017 identified two distinct subgenotypes, VIa and VIn. Subgenotype VIn has been primarily isolated from collared doves in the southern U.S., while VIa has been isolated from mixed avian species in the northeastern U.S., indicating two independent introductions into California. While populations of collared doves are not expected to be substantially impacted by this disease, PPMV-1 may pose a threat to already declining populations of native columbids. This threat could be assessed by monitoring native and non-native columbids for PPMV-1. Based on our study, swab samples may not be sufficient to detect infection in native columbids and may require the use of non-traditional diagnostic approaches, such as FFPE tissues, to ensure virus detection.


Subject(s)
Bird Diseases/epidemiology , Columbidae , Paramyxoviridae Infections/veterinary , Paramyxovirinae/isolation & purification , Age Factors , Animals , Bird Diseases/mortality , Bird Diseases/virology , California/epidemiology , Female , Introduced Species , Male , Paramyxoviridae Infections/epidemiology , Paramyxoviridae Infections/mortality , Paramyxoviridae Infections/virology , Paramyxovirinae/genetics , Prevalence , Seasons , Sex Factors
4.
Expert Rev Anti Infect Ther ; 19(6): 787-796, 2021 06.
Article in English | MEDLINE | ID: mdl-33141622

ABSTRACT

Objectives: To compare the clinical characteristics and outcomes of patients hospitalized with respiratory syncytial virus (RSV), human metapneumovirus (hMPV), and influenza infections.Methods: This study prospectively enrolled 594 patients hospitalized with influenza-like illness (ILI) and laboratory-confirmed RSV, hMPV, or influenza infections over three consecutive influenza seasons at a tertiary hospital in China.Results: While certain clinical features were of value as predictors of infection type, none exhibited good predictive performance as a means of discriminating between these three infections (area under the receiver-operating characteristic curve < 0.70). After controlling for potential confounding variables, RSV infections in pneumonia patients were found to be associated with a 30-day mortality risk comparable to that of influenza patients [odds ratio (OR) 1.016, 95% confidence interval (CI) 0.267-3.856, p = 0.982], whereas hMPV infection was associated with a reduced risk of mortality (OR 0.144, 95% CI 0.027-0.780, p = 0.025). Among those without pneumonia, the 30-day mortality risk in patients with influenza was comparable to that in patients infected with RSV (OR 1.268, 95% CI 0.172-9.355, p = 0.816) or hMPV (OR 1.128, 95% CI 0.122-10.419, p = 0.916).Conclusion: Disease severity associated with these three types of viral infection was inconsistent when comparing patients with and without pneumonia, highlighting the importance of etiologic testing.


Subject(s)
Influenza, Human/epidemiology , Paramyxoviridae Infections/epidemiology , Pneumonia, Viral/epidemiology , Respiratory Syncytial Virus Infections/epidemiology , Aged , China , Female , Hospitalization , Humans , Influenza, Human/mortality , Male , Metapneumovirus/isolation & purification , Middle Aged , Paramyxoviridae Infections/mortality , Pneumonia, Viral/mortality , Pneumonia, Viral/virology , Prospective Studies , Respiratory Syncytial Virus Infections/mortality , Severity of Illness Index , Tertiary Care Centers
5.
Ann Hematol ; 99(6): 1231-1239, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32382770

ABSTRACT

Parainfluenza virus (PIV) infection is a significant cause of morbidity and mortality, especially in hematologic malignancy patients including hematopoietic stem cell transplantation (HCT) recipients. However, limited information is available for risk stratification in PIV-infected patients with hematologic malignancy with or without HCT. Patients with hematologic malignancy diagnosed with PIV from January 2009 to December 2018 were retrospectively included in a tertiary care hospital in Seoul, South Korea. Upper respiratory tract infection (URTI) was defined as the detection of PIV in a nasopharyngeal sample with URTI symptoms without new pulmonary infiltrates. Lower respiratory tract infection (LRTI) was defined as detection of PIV in either upper or lower respiratory tract samples with new pulmonary infiltrates, with or without hypoxia. PIV-associated mortality was defined as death with respiratory failure and persistent LRTI within 90 days after diagnosis. The study included 143 adult patients. Of these, 55 (38%) progressed to or initially presented with LRTI. Among these, 22 (40%) died from PIV-associated mortality. An immunodeficiency risk score was developed from associated risk factors using a multivariable Cox regression model. Patients were stratified into low (0-2), moderate (3-5), and high risk (6-8) groups with PIV-associated mortalities of 0%, 9%, and 67%, respectively (p < 0.005, Harrell's C-index = 0.84). PIV infection can result in substantial mortality in patients with hematologic malignancy if it progresses to LRTI. The immunodeficiency risk score presented here may be useful for distinguishing moderate and high risk groups that might benefit from antiviral therapy.


Subject(s)
Hematologic Neoplasms/diagnosis , Hematologic Neoplasms/mortality , Immunologic Deficiency Syndromes/diagnosis , Immunologic Deficiency Syndromes/mortality , Paramyxoviridae Infections/diagnosis , Paramyxoviridae Infections/mortality , Adult , Cohort Studies , Female , Hematologic Neoplasms/immunology , Humans , Immunologic Deficiency Syndromes/immunology , Male , Middle Aged , Mortality/trends , Paramyxoviridae Infections/immunology , Predictive Value of Tests , Retrospective Studies , Risk Factors
6.
J Clin Virol ; 117: 1-4, 2019 08.
Article in English | MEDLINE | ID: mdl-31128379

ABSTRACT

BACKGROUND: The outcomes of severe human metapneumovirus (HMPV)-associated pneumonia have not been adequately evaluated. OBJECTIVES: We aimed to investigate the incidence and outcomes of severe HMPV-associated CAP and to compare them with those of severe IFV associated CAP. STUDY DESIGN: From March 2010 to August 2017, all consecutive adult patients with severe HMPV-associated CAP and severe influenza virus (IFV)-associated CAP who required intensive care unit admission were prospectively identified and followed in a 2,700-bed tertiary care hospital. The characteristics and outcomes of severe HMPV-associated CAP patients were compared with those of severe IFV-associated CAP patients. RESULTS: HMPV and IFV were identified in 3.2% (50) and 7.0% (109) of the 1559 patients with severe CAP, respectively. The mortality rates were not significantly different between the HMPV and IFV groups (30-day mortality: 24.0% vs. 32.1%, p = 0.30; 60-day mortality: 32.0% vs. 38.5%, p = 0.43). Oral ribavirin therapy was not associated with improved outcome (60-day mortality: ribavirin therapy group 35.0% [7/20] vs. no ribavirin therapy group 30.0% [9/30], p = 0.71). Subgroup analyses showed no significant differences in mortality among non-immunocompromised (60-day mortality: HMPV 25.6% vs. IFV 31.1%, p = 0.55) and immunocompromised patients (60-day mortality; HMPV 54.5% vs. 54.3%, p = 0.99). The length of ICU and hospital stay did not differ between groups. CONCLUSIONS: The incidence of HMPV infection was approximately half that of IFV infection in a cohort of patients with severe CAP. The mortality rate of severe HMPV-associated CAP was similar to that of severe IFV associated CAP.


Subject(s)
Community-Acquired Infections/virology , Influenza, Human/epidemiology , Metapneumovirus/pathogenicity , Paramyxoviridae Infections/epidemiology , Pneumonia, Viral/epidemiology , Ribavirin/administration & dosage , Administration, Oral , Aged , Community-Acquired Infections/drug therapy , Community-Acquired Infections/epidemiology , Community-Acquired Infections/mortality , Female , Hospitalization , Humans , Incidence , Influenza, Human/drug therapy , Influenza, Human/mortality , Intensive Care Units , Length of Stay , Male , Middle Aged , Mortality , Paramyxoviridae Infections/drug therapy , Paramyxoviridae Infections/mortality , Pneumonia, Viral/drug therapy , Pneumonia, Viral/mortality , Prospective Studies , Ribavirin/therapeutic use , Seoul/epidemiology
7.
J Clin Virol ; 112: 15-19, 2019 03.
Article in English | MEDLINE | ID: mdl-30669024

ABSTRACT

BACKGROUND: Human metapneumovirus (HMPV) is a pneumovirus known to cause respiratory disease in children. It was identified as a pathogen in 2001 and its healthcare burden and associated costs are not fully understood. OBJECTIVES: This study aimed to assess the clinical characteristics of children with HMPV infection admitted to paediatric intensive care units (PICUs) across the United Kingdom (UK) over a nine-year period and to estimate the associated costs of care. STUDY DESIGN: Data were collected from the UK paediatric intensive care audit network (PICANet) and costs calculated using the National Health Service (NHS) reference costing scheme. RESULTS: There were 114 admissions in which HMPV was detected. The number of admissions associated with a code of HMPV rose steadily over the study period (three in 2006 to 28 in 2014) and showed significant seasonal variability, with the peak season being from November to May. Children required varying levels of intensive care support from minimal to complex support including invasive ventilation, inotropes, renal replacement therapy and extracorporeal membrane oxygenation (ECMO). HMPV was associated with five deaths during the study period. The associated costs of PICU admissions were estimated to be between £2,256,823 and £3,997,823 over the study period, with estimated annual costs rising over the study period due to increasing HMPV admissions. CONCLUSIONS: HMPV is associated with a significant healthcare burden and associated cost of care in PICUs in the UK.


Subject(s)
Hospitalization/statistics & numerical data , Intensive Care Units, Pediatric/statistics & numerical data , Paramyxoviridae Infections/epidemiology , Adolescent , Child , Child, Preschool , Cost of Illness , Female , Hospitalization/economics , Humans , Infant , Infant, Newborn , Intensive Care Units, Pediatric/economics , Male , Metapneumovirus/pathogenicity , National Health Programs/statistics & numerical data , Paramyxoviridae Infections/economics , Paramyxoviridae Infections/mortality , Retrospective Studies , Seasons , United Kingdom/epidemiology
8.
Biol Blood Marrow Transplant ; 25(1): 163-171, 2019 01.
Article in English | MEDLINE | ID: mdl-30149147

ABSTRACT

Parainfluenza virus (PIV) infection can progress from upper respiratory tract infection (URTI) to lower respiratory tract disease (LRTD) in immunocompromised hosts. Risk factors for progression to LRTD and presentation with LRTD without prior URTI are poorly defined. Hematopoietic cell transplant (HCT) recipients with PIV infection were retrospectively analyzed using standardized definitions of LRTD. PIV was detected in 540 HCT recipients; 343 had URTI alone and 197 (36%) had LRTD (possible, 76; probable, 19; proven, 102). Among 476 patients with positive nasopharyngeal samples, the cumulative incidence of progression to probable/proven LRTD by day 40 was 12%, with a median time to progression of 7 days (range, 2 to 40). In multivariable analysis monocytopenia (hazard ratio, 2.22; P = .011), steroid use ≥1mg/kg prior to diagnosis (hazard ratio, 1.89; P = .018), co-pathogen detection in blood (hazard ratio, 3.21; P = .027), and PIV type 3 (hazard ratio, 3.57; P = .032) were associated with increased progression risk. In the absence of all 4 risk factors no patients progressed to LRTD, whereas progression risk increased to >30% if 3 or more risk factors were present. Viral load or ribavirin use appeared to have no effect on progression. Among 121 patients with probable/proven LRTD, 64 (53%) presented LRTD without prior URTI, and decreased lung function before infection and lower respiratory co-pathogens were risk factors for this presentation. Mortality was unaffected by the absence of prior URTI. We conclude that the risk of progression to probable/proven LRTD exceeded 30% with ≥3 risk factors. To detect all cases of LRTD, virologic testing of lower respiratory samples is required regardless of URTI symptoms.


Subject(s)
Hematopoietic Stem Cell Transplantation , Immunocompromised Host , Paramyxoviridae Infections , Respiratory Tract Infections , Ribavirin/administration & dosage , Adult , Allografts , Female , Humans , Male , Middle Aged , Paramyxoviridae Infections/blood , Paramyxoviridae Infections/drug therapy , Paramyxoviridae Infections/etiology , Paramyxoviridae Infections/mortality , Respiratory Tract Infections/blood , Respiratory Tract Infections/drug therapy , Respiratory Tract Infections/etiology , Respiratory Tract Infections/mortality , Retrospective Studies , Risk Factors
9.
Am J Respir Crit Care Med ; 199(4): 518-528, 2019 02 15.
Article in English | MEDLINE | ID: mdl-30230909

ABSTRACT

RATIONALE: Noninvasive diagnostic multiplex molecular tests may enable the early identification and treatment of viral infections in critically ill immunocompromised patients. OBJECTIVES: To assess the association between viral detection in nasopharyngeal swabs and ICU mortality in critically ill hematology patients. METHODS: This was a post hoc analysis of a prospective cohort of critically ill hematology patients admitted to 17 ICUs. Nasal swabs sampled and frozen at ICU admission were tested using a multiplex PCR assay. Predictors of ICU mortality and assay positivity were identified. MEASUREMENTS AND MAIN RESULTS: Of the 747 patients (447 with acute respiratory failure [ARF]), 21.3% had a virus detected (56.4% rhinovirus/enterovirus and 30.7% influenza/parainfluenza/respiratory syncytial viruses). Overall ICU and hospital mortality rates were 26% and 37%, respectively. Assay positivity was associated with lymphoproliferative disorders, hematopoietic stem cell transplantation, treatment with steroids or other immunosuppressants, ARF (25.5% vs. 16.3%; P = 0.004), and death in the ICU (28.9% vs. 19.3%; P = 0.008). The association with ICU mortality was significant for all viruses and was strongest for influenza/parainfluenza/respiratory syncytial viruses. In patients with ARF, detection of any respiratory virus was independently associated with ICU mortality (odds ratio, 2.07; 95% confidence interval, 1.22-3.50). CONCLUSIONS: Respiratory virus detection in the upper airway by multiplex PCR assay is common in critically ill hematology patients. In patients with ARF, respiratory virus detection was independently associated with ICU mortality. Multiplex PCR assay may prove helpful for the risk stratification of hematology patients with ARF. Studies to understand whether respiratory tract viruses play a causal role in outcomes are warranted.


Subject(s)
Hematologic Diseases/virology , Immunocompromised Host , Respiratory Tract Infections/virology , Aged , Critical Illness , Female , Hematologic Diseases/complications , Hematologic Diseases/mortality , Hospital Mortality , Humans , Influenza, Human/complications , Influenza, Human/diagnosis , Influenza, Human/mortality , Intensive Care Units , Male , Middle Aged , Multiplex Polymerase Chain Reaction , Paramyxoviridae Infections/complications , Paramyxoviridae Infections/diagnosis , Paramyxoviridae Infections/mortality , Picornaviridae Infections/complications , Picornaviridae Infections/diagnosis , Picornaviridae Infections/mortality , Respiratory Syncytial Virus Infections/complications , Respiratory Syncytial Virus Infections/diagnosis , Respiratory Syncytial Virus Infections/mortality , Respiratory Tract Infections/diagnosis , Respiratory Tract Infections/mortality
10.
Emerg Infect Dis ; 25(1): 15-24, 2019 01.
Article in English | MEDLINE | ID: mdl-30560776

ABSTRACT

Clinical features of human metapneumovirus (HMPV) infection have not been well documented for adults. We investigated clinical and radiologic features of HMPV infection in 849 adults in a tertiary hospital in South Korea. We classified patients into groups on the basis of underlying diseases: immunocompetent patients, solid tumor patients, solid organ transplantation recipients, hematopoietic stem cell transplant recipients, hematologic malignancy patients, and patients receiving long-term steroid treatment. Of 849 HMPV-infected patients, 756 had community-acquired infections, 579 had pneumonia, and 203 had infections with other pathogens. Mortality rates were highest in hematopoietic stem cell transplantation recipients (22% at 30 days). Older age, current smoking, and underlying disease were associated with HMPV pneumonia. Body mass index and an immunocompromised state were associated with 30-day mortality rates in HMPV-infected patients. Bronchial wall thickening, ground-glass opacity, and ill-defined centrilobular nodules were common computed tomography findings for HMPV pneumonia. Macronodules and consolidation were observed in <50% of patients.


Subject(s)
Community-Acquired Infections/diagnostic imaging , Metapneumovirus/physiology , Paramyxoviridae Infections/diagnostic imaging , Pneumonia, Viral/diagnostic imaging , Aged , Community-Acquired Infections/mortality , Community-Acquired Infections/virology , Female , Hematologic Neoplasms/diagnostic imaging , Hematologic Neoplasms/mortality , Hematologic Neoplasms/virology , Hematopoietic Stem Cell Transplantation/adverse effects , Humans , Immunocompromised Host , Male , Middle Aged , Organ Transplantation/adverse effects , Paramyxoviridae Infections/mortality , Paramyxoviridae Infections/virology , Pneumonia, Viral/mortality , Pneumonia, Viral/virology , Republic of Korea/epidemiology , Tertiary Care Centers , Tomography, X-Ray Computed
11.
J Zoo Wildl Med ; 49(4): 983-995, 2018 12 13.
Article in English | MEDLINE | ID: mdl-30592933

ABSTRACT

Between June and October 2013, 26 snakes of six viperid species kept in two adjoining rooms died ( n = 16) or were euthanized on medical (1) or welfare grounds (9). Two were from the main zoo collection, but the other 24 had been imported and quarantined for a minimum of 6 mo. Four of those that died and the single snake euthanized on medical grounds showed minor signs of respiratory disease prior to death, and five were weak, lethargic, and/or poor feeders. Frequent postmortem findings among all snakes were poor body condition (18) and respiratory disease (13). Seventeen cases were examined histologically, and pneumonia, sometimes with air sacculitis and/or tracheitis, was present in 15 individuals. Lung samples from 24 snakes were ferlavirus polymerase chain reaction (PCR) positive, and one of the two snakes for which only liver was available was also positive. The negative liver sample was from a snake that died of sepsis following anesthesia for surgical removal of a spindle cell sarcoma. Correlation with antemortem PCR testing of glottal and cloacal swabs in five cases was poor (sensitivity = 40%). Immunohistochemistry (IHC) for ferlaviruses on the tissues of 13 PCR-positive cases showed positive labeling in 7 only. Tissues samples from 22 ferlavirus PCR-positive snakes were examined for Chlamydia species by PCR, and 9 were positive, although DNA sequencing only confirmed two of three tested as Chlamydia pneumoniae. Immunohistochemistry for Chlamydia pneumoniae of seven cases (two Chlamydiales PCR positive, one of which was sequenced as C. pneumoniae, plus five negative) confirmed the Chlamydia PCR results. These two Chlamydiales PCR and IHC positive snakes were ferlavirus PCR positive, but IHC negative suggesting that, even though a ferlavirus was the predominant cause of the outbreak, in a few cases death may have been due to chlamydiosis with ferlavirus present, but not acting as the primary pathogen.


Subject(s)
Disease Outbreaks/veterinary , Paramyxoviridae Infections/veterinary , Paramyxoviridae/isolation & purification , Viperidae , Animals , Animals, Zoo , Female , London/epidemiology , Male , Paramyxoviridae Infections/epidemiology , Paramyxoviridae Infections/mortality , Paramyxoviridae Infections/virology
12.
Arch Virol ; 163(6): 1663-1669, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29460003

ABSTRACT

Over a period of 7 years (2004-2011), samples from 34 diseased reptiles provided by local governments, zoos, and pet shops were tested for viral infection. Animals were diagnosed based on clinical signs, including loss of appetite, diarrhea, rhinorrhea, and unexpected sudden death. Most of the exotic animals had gastrointestinal problems, such as mucosal redness and ulcers, while the native animals had no clinical symptoms. Viral sequences were found in seven animals. Retroviral genes were amplified from samples from five Burmese pythons (Python molurus bivittatus), an adenovirus was detected in a panther chameleon (Furcifer pardalis), and an adenovirus and a paramyxovirus were detected in a tropical girdled lizard (Cordylus tropidosternum). Phylogenetic analysis of retroviruses and paramyxoviruses showed the highest sequence identity to both a Python molurus endogenous retrovirus and a Python curtus endogenous retrovirus and to a lizard isolate, respectively. Partial sequencing of an adenoviral DNA polymerase gene from the lizard isolate suggested that the corresponding virus was a novel isolate different from the reference strain (accession no. AY576677.1). The virus was not isolated but was detected, using molecular genetic techniques, in a lizard raised in a pet shop. This animal was also coinfected with a paramyxovirus.


Subject(s)
Adenoviridae/genetics , DNA-Directed DNA Polymerase/genetics , Paramyxoviridae/genetics , Phylogeny , Reptiles/virology , Retroviridae/genetics , Viral Proteins/genetics , Adenoviridae/classification , Adenoviridae/isolation & purification , Adenoviridae/pathogenicity , Adenoviridae Infections/mortality , Adenoviridae Infections/pathology , Adenoviridae Infections/veterinary , Adenoviridae Infections/virology , Animals , DNA, Viral/genetics , Paramyxoviridae/classification , Paramyxoviridae/isolation & purification , Paramyxoviridae/pathogenicity , Paramyxoviridae Infections/mortality , Paramyxoviridae Infections/pathology , Paramyxoviridae Infections/veterinary , Paramyxoviridae Infections/virology , Republic of Korea , Retroviridae/classification , Retroviridae/isolation & purification , Retroviridae/pathogenicity , Retroviridae Infections/mortality , Retroviridae Infections/pathology , Retroviridae Infections/veterinary , Retroviridae Infections/virology
13.
Antivir Ther ; 23(6): 523-527, 2018.
Article in English | MEDLINE | ID: mdl-29424696

ABSTRACT

BACKGROUND: Community respiratory viruses (CRVs) are associated with upper respiratory viral infections (URI), pneumonia or life-threatening respiratory disease in patients with allogeneic haematopoietic stem cell transplantation (allo-HSCT). Our aim is to demonstrate our URI experience related to CRVs after allo-HSCT. METHODS: From January 2013 to November 2015, 39 post allo-HSCT patients with acute URI symptoms were included in the study. We evaluated CRVs by multiplex PCR from nasopharyngeal wash and throat swabs. RESULTS: The median age of the patients was 39 (range 20-67 years). A total of 25 patients (64%) had viral panel positivity at a median 140 days post-transplant (range 3-617 days). The most common agents detected were respiratory syncytial virus (32%) and parainfluenza (32%). The patients with viral panel positivity had significantly lower lymphocyte count (1.05×109/l versus 3.09×109/l; P=0.013). During follow-up, 20 patients (80%) were diagnosed with pneumonia. Patients with concurrent bacterial or fungal infections were more likely to have pneumonia (100% versus 68%; P=0.023). 10 patients (40%) died due to pneumonia and related complications. Lower lymphocyte counts and higher C-reactive protein levels at the time of viral panel positivity were risk factors for mortality (1.5×109/l versus 0.39×109/l, P=0.007; 74.2 versus 199.7, P=0.006). CONCLUSIONS: The viral panel was positive in 64% of patients with acute URI symptoms. Lower lymphocyte count was detected in CRV-positive patients. The onset of concomitant bacterial or fungal infections increased the risk of lower respiratory infection disease. Indeed, prospective studies should be designed for risks and outcomes of CRVs in allo-HSCT recipients.


Subject(s)
Hematologic Neoplasms/virology , Paramyxoviridae Infections/virology , Pneumonia, Viral/virology , Respiratory Syncytial Virus Infections/virology , Respiratory Tract Infections/virology , Adult , Aged , C-Reactive Protein/metabolism , Female , Hematologic Neoplasms/immunology , Hematologic Neoplasms/mortality , Hematologic Neoplasms/therapy , Hematopoietic Stem Cell Transplantation , Humans , Lymphocyte Count , Male , Middle Aged , Paramyxoviridae/immunology , Paramyxoviridae/isolation & purification , Paramyxoviridae Infections/immunology , Paramyxoviridae Infections/mortality , Paramyxoviridae Infections/therapy , Pneumonia, Viral/immunology , Pneumonia, Viral/mortality , Pneumonia, Viral/therapy , Respiratory Syncytial Virus Infections/immunology , Respiratory Syncytial Virus Infections/mortality , Respiratory Syncytial Virus Infections/therapy , Respiratory Syncytial Virus, Human/immunology , Respiratory Syncytial Virus, Human/isolation & purification , Respiratory Tract Infections/immunology , Respiratory Tract Infections/mortality , Respiratory Tract Infections/therapy , Retrospective Studies , Risk Factors , Survival Analysis , Transplantation, Homologous
14.
Br J Pharmacol ; 175(2): 388-403, 2018 01.
Article in English | MEDLINE | ID: mdl-29105740

ABSTRACT

BACKGROUND AND PURPOSE: Protease-activated receptor 1 (PAR1) has been demonstrated to be involved in the pathogenesis of viral diseases. However, its role remains controversial. The goal of our study was to investigate the contribution of PAR1 to respiratory syncytial virus (RSV) and human metapneumovirus (hMPV) infections. EXPERIMENTAL APPROACH: Pharmacological approaches were used to investigate the role of PAR1 during RSV and hMPV infection, in vitro using epithelial A549 cells and in vivo using a mouse model of virus infection. KEY RESULTS: In vitro, the PAR1 antagonist RWJ-56110 reduced the replication of RSV and hMPV in A549 cells. In agreement with these results, RWJ-56110-treated mice were protected against RSV and hMPV infections, as indicated by less weight loss and mortality. This protective effect in mice correlated with decreased lung viral replication and inflammation. In contrast, hMPV-infected mice treated with the PAR1 agonist TFLLR-NH2 showed increased mortality, as compared to infected mice, which were left untreated. Thrombin generation was shown to occur downstream of PAR1 activation in infected mice via tissue factor exposure as part of the inflammatory response, and thrombin inhibition by argatroban reduced the pathogenicity of the infection with no additive effect to that induced by PAR1 inhibition. CONCLUSION AND IMPLICATIONS: These data show that PAR1 plays a detrimental role during RSV and hMPV infections in mice via, at least, a thrombin-dependent mechanism. Thus, the use of PAR1 antagonists and thrombin inhibitors may have potential as a novel approach for the treatment of RSV and hMPV infections.


Subject(s)
Indazoles/pharmacology , Paramyxoviridae Infections/virology , Receptor, PAR-1/antagonists & inhibitors , Respiratory Syncytial Virus, Human/drug effects , Thrombin/pharmacology , Urea/analogs & derivatives , Virus Replication/drug effects , Animals , Arginine/analogs & derivatives , Cells, Cultured , Female , Humans , Metapneumovirus/drug effects , Mice , Oligopeptides/pharmacology , Paramyxoviridae Infections/mortality , Pipecolic Acids/pharmacology , Receptor, PAR-1/agonists , Sulfonamides , Urea/pharmacology , Weight Loss/drug effects
15.
Influenza Other Respir Viruses ; 11(6): 564-568, 2017 11.
Article in English | MEDLINE | ID: mdl-29054112

ABSTRACT

BACKGROUND: Severe acute respiratory infection (SARI) threatens human health and even survival, causing a huge number of hospitalized patients every year. However, as one of the most common respiratory viruses circulated worldwide, the epidemiological and phylogenetic characteristics of human parainfluenza virus (HPIV) in these cases were not well known. OBJECTIVES: To reveal the epidemiological features of HPIV infection in SARIs in Beijing area from September 2014 to August 2016. METHODS: A total of 1229 SARI cases in Beijing area were enrolled, investigated, sampled, and tested by multiplex real-time PCR to identify HPIVs and other common respiratory viruses. Eighteen HPIV-3 viruses isolated from all HPIV-positive samples in these SARI cases were sequenced and analyzed. RESULTS: Among all enrolled cases, 0.81%, 0.73%, 4.48%, and 0.57% were positive for HPIV-1 to HPIV-4, respectively. The highest yield rate of HPIV infection occurred in children under 5 years old (9.07%), followed by the patients over 60 years old (6.02%). The phylogenetic information of HPIV-3 showed that all viruses belonged to Cluster C3a. CONCLUSIONS: Besides the young children, the elders older than 60 years also showed a relatively high infection rate of HPIVs, which should be given comparable attentions. Moreover, the HPIV-3 circulating in China undergoes continued evolution, suggesting the potential risk of evolved HPIV infection should not be overlooked.


Subject(s)
Acute Disease/epidemiology , Parainfluenza Virus 4, Human/genetics , Paramyxoviridae Infections/epidemiology , Respiratory Tract Infections/epidemiology , Adolescent , Adult , Aged , Child , Child, Preschool , China/epidemiology , Female , Genetic Variation , Hospitalization/statistics & numerical data , Humans , Infant , Infant, Newborn , Male , Middle Aged , Parainfluenza Virus 4, Human/classification , Parainfluenza Virus 4, Human/isolation & purification , Paramyxoviridae Infections/mortality , Paramyxoviridae Infections/virology , Phylogeny , RNA, Viral/genetics , Real-Time Polymerase Chain Reaction , Respiratory Tract Infections/virology , Young Adult
16.
Cancer Lett ; 379(1): 100-6, 2016 08 28.
Article in English | MEDLINE | ID: mdl-27260872

ABSTRACT

Over the past decade, reported incidence of human metapneumovirus (hMPV) has increased owing to the use of molecular assays for diagnosis of respiratory viral infections in cancer patients. The seasonality of these infections, differences in sampling strategies across institutions, and small sample size of published studies make it difficult to appreciate the true incidence and impact of hMPV infections. In this systematic review, we summarized the published data on hMPV infections in hematopoietic cell transplant recipients and patients with hematologic malignancy, focusing on incidence, hMPV-associated lower respiratory tract infection (LRTI), mortality, prevention, and management with ribavirin and/or intravenous immunoglobulins. Although the incidence of hMPV infections and hMPV-associated LRTI in this patient population is similar to respiratory syncytial virus or parainfluenza virus and despite lack of directed antiviral therapy, the mortality rate remains low unless patients develop LRTI. In the absence of vaccine to prevent hMPV, infection control measures are recommended to reduce its burden in cancer patients.


Subject(s)
Hematologic Neoplasms/virology , Hematopoietic Stem Cell Transplantation/adverse effects , Metapneumovirus/pathogenicity , Paramyxoviridae Infections/virology , Respiratory Tract Infections/virology , Antiviral Agents/therapeutic use , Hematologic Neoplasms/diagnosis , Hematologic Neoplasms/mortality , Hematopoietic Stem Cell Transplantation/mortality , Humans , Immunoglobulins, Intravenous/therapeutic use , Incidence , Metapneumovirus/drug effects , Paramyxoviridae Infections/diagnosis , Paramyxoviridae Infections/drug therapy , Paramyxoviridae Infections/mortality , Predictive Value of Tests , Prognosis , Respiratory Tract Infections/diagnosis , Respiratory Tract Infections/drug therapy , Respiratory Tract Infections/mortality , Risk Factors
17.
J Trop Pediatr ; 62(5): 352-60, 2016 10.
Article in English | MEDLINE | ID: mdl-27037248

ABSTRACT

OBJECTIVES: We investigated mortality and morbidity of patients admitted to a pediatric intensive care unit (PICU) with paramyxovirus infection. METHODS: A retrospective study between October 2002 and March 2015 of children with a laboratory-confirmed paramyxovirus infection was included. RESULTS: In all, 98 (5%) PICU admissions were tested positive to have paramyxovirus infection (respiratory syncytial virus = 66, parainfluenza = 27 and metapneumovirus = 5). The majority of admissions were young patients (median age 1.05 years). Bacteremia and bacterial isolation in any site were present in 10% and 28%, respectively; 41% were mechanically ventilated, and 20% received inotropes. The three respiratory viruses caused similar mortality and morbidity in the PICU. Fatality (seven patients) was associated with malignancy, positive bacterial culture in blood, the use of mechanical ventilation, inotrope use, lower blood white cell count and higher C reactive protein (p = 0.02-0.0005). Backward binary logistic regression for these variables showed bacteremia (odds ratio [OR]: 31.7; 95% CI: 2.3-427.8; p = 0.009), malignancy (OR: 45.5; 95% CI: 1.4-1467.7; p = 0.031) and use of inotropes (OR: 15.0; 95% CI: 1.1-196.1; p = 0.039) were independently associated with non-survival. March and July appeared to be the two peak months for PICU hospitalizations with paramyxovirus infection. CONCLUSIONS: Infections with paramyxoviruses account for 5% of PICU admissions and significant morbidity. Patient with premorbid history of malignancy and co-morbidity of bacteremia are associated with non-survival. March and July appeared to be the two peak months for PICU admissions with paramyxoviruses.


Subject(s)
Intensive Care Units, Pediatric/statistics & numerical data , Paramyxoviridae Infections/mortality , Paramyxoviridae/isolation & purification , Respiratory Syncytial Virus Infections/epidemiology , Child , Child, Preschool , Comorbidity , Female , Hong Kong/epidemiology , Humans , Infant , Length of Stay , Male , Morbidity , Paramyxoviridae Infections/diagnosis , Respiratory Syncytial Virus Infections/diagnosis , Respiratory Syncytial Viruses/isolation & purification , Retrospective Studies , Seasons
18.
Cancer Lett ; 370(2): 358-64, 2016 Jan 28.
Article in English | MEDLINE | ID: mdl-26582658

ABSTRACT

Parainfluenza viral infections are increasingly recognized as common causes of morbidity and mortality in cancer patients, particularly in hematopoietic cell transplant (HCT) recipients and hematologic malignancy (HM) patients because of their immunocompromised status and susceptibility to lower respiratory tract infections. Advances in diagnostic methods, including polymerase chain reaction, have led to increased identification and awareness of these infections. Lack of consensus on clinically significant endpoints and the small number of patients affected in each cancer institution every year make it difficult to assess the efficacy of new or available antiviral drugs. In this systematic review, we summarized data from all published studies on parainfluenza virus infections in HM patients and HCT recipients, focusing on incidence, risk factors, long-term outcomes, mortality, prevention, and management with available or new investigational agents. Vaccines against these viruses are lacking; thus, infection control measures remain the mainstay for preventing nosocomial spread. A multi-institutional collaborative effort is recommended to standardize and validate clinical endpoints for PIV infections, which will be essential for determining efficacy of future vaccine and antiviral therapies.


Subject(s)
Hematologic Neoplasms/complications , Hematopoietic Stem Cell Transplantation/adverse effects , Paramyxoviridae Infections/etiology , Antiviral Agents/therapeutic use , Humans , Incidence , Paramyxoviridae Infections/epidemiology , Paramyxoviridae Infections/mortality , Risk Factors
20.
Pediatr Crit Care Med ; 16(7): e201-6, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26121097

ABSTRACT

OBJECTIVE: Respiratory viral infection is a common source of morbidity and mortality in children. Coinfection with multiple viruses occurs frequently; however, the clinical significance of concomitant viral pathogens is unclear. We hypothesized that presence of more than one respiratory virus is associated with increased morbidity and mortality when compared with children with a single respiratory virus. DESIGN: Retrospective cohort study. SETTING: A tertiary care hospital. PATIENTS: All children at Duke Children's Hospital over a 2-year period with isolation of a virus on an extended viral respiratory panel result. Demographic data, comorbidities, and details of hospital encounter were recorded. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: Two hundred thirty-five hospital encounters demonstrated positive extended viral respiratory panels. Immunocompromised status (37%) and respiratory comorbidities (23%) were common. Twenty-eight patients (12%) tested positive for multiple viruses, with adenovirus (23/28) and respiratory syncytial virus (15/28) most prevalent in patients with multiple viruses. Viral codetection was associated with increased use of noninvasive ventilation (p = 0.02), extracorporeal membrane oxygenation (p = 0.02), increased likelihood of moderate or severe illness (p = 0.005), and increased mortality (p = 0.01). Subgroup analysis demonstrated that this mortality association persisted for children with normal immune function (p = 0.003) and children with no comorbidities (p = 0.007). CONCLUSIONS: Children with multiple respiratory viruses may be at increased risk of moderate or severe illness and mortality, with previously healthy children potentially being at greatest risk. Further studies are indicated to determine the significance and generalizability of this finding and to better understand the pathophysiology of viral coinfection.


Subject(s)
Adenovirus Infections, Human/mortality , Hospital Mortality , Paramyxoviridae Infections/mortality , Respiratory Syncytial Virus Infections/mortality , Respiratory Tract Infections/mortality , Adenovirus Infections, Human/virology , Child , Child, Preschool , Cohort Studies , Female , Humans , Infant , Length of Stay , Male , Paramyxoviridae Infections/virology , Respiratory Syncytial Virus Infections/virology , Respiratory Tract Infections/virology , Retrospective Studies , Risk Factors , Severity of Illness Index , Tertiary Care Centers
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