Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 2.505
Filter
1.
Curr Microbiol ; 81(10): 342, 2024 Sep 03.
Article in English | MEDLINE | ID: mdl-39225770

ABSTRACT

Exopolysaccharides (EPS) are natural macromolecular carbohydrates with good functional activity and physiological activities, which can be utilized as an emulsifier, viscosity enhancer, stabilizer, gelling agent, and water retention agent in a wide range of food products. In this study, the whole genome of Bacillus amyloliquefaciens D189, an EPS-producing bacteria, was sequenced. The result showed that D189 contains a single, circular chromosome of 3,963,356 bp with an average GC content of 45.74% and 3996 coding genes. The gene annotation results showed that D189 is a potentially safe strain and confirmed to be safe associated with hemolytic assay, and antibiotic resistance test. Meanwhile, D189 genome possessed 240 genes related to carbohydrate metabolism. More importantly, D189 could transport 9 sugars and contained a complete biosynthetic pathway for 8 nucleotide sugars. Based on the validation experiments, strain D189 could metabolize 8 sugars (glucose, sucrose, trehalose, fructose, cellobiose, maltose, mannitol, and N-acetyl-D-glucosamine) to produce EPS, with the highest yield of 1.212 g/L when sucrose was the carbon source. Therefore, the whole genome sequencing preliminarily elucidated the physiological mechanism of EPS, providing several pathways for engineering D189 to further enhance the yield of EPS.


Subject(s)
Bacillus amyloliquefaciens , Genome, Bacterial , Polysaccharides, Bacterial , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism , Bacillus amyloliquefaciens/genetics , Bacillus amyloliquefaciens/metabolism , Whole Genome Sequencing , Base Composition , Phenotype , Carbohydrate Metabolism
2.
Int J Biol Macromol ; 279(Pt 3): 135283, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39233163

ABSTRACT

Xanthan gum (XG) is a bacterial exopolysaccharide widely used in various industries due to its stability and rheological properties. Low-molecular-weight xanthan gum (LXG) exhibits enhanced properties and broader applications, but current degradation methods are limited. This study introduces an innovative coupled fermentation system for the efficient production of LXG. Endo-xanthanase from Microbacterium sp. XT11 was expressed in Pichia pastoris GS115, exhibiting optimal activity at pH 6.0 and 40 °C, with broad pH tolerance. The optimized coupled fermentation system used bean sprouts juice as nitrogen source, the inoculation quantity of X. campestris: P. pastoris was 1: 3, and the pH was controlled at 6.0. In the bioreactor, the total sugar concentration reached 12.12 g/L, the reducing sugar concentration reached 5.32 g/L, and the endo-xanthanase activity increased to 1150.26 U/L, which were 2.13, 2.3, and 3.71 times higher than those at the shake flask level, respectively. The prepared LXG had a molecular weight of 1093 Da and a monosaccharide ratio of 2.0:1.57:0.89 (glucose, mannose, and glucuronic acid). Bioactivity analysis revealed its antioxidant and prebiotic properties, promoting the growth of beneficial intestinal microbiota and metabolite production. This suggests the potential of LXG as a functional ingredient in intestinal health-focused foods and supplements.


Subject(s)
Fermentation , Molecular Weight , Polysaccharides, Bacterial , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/biosynthesis , Hydrogen-Ion Concentration , Antioxidants/chemistry , Antioxidants/metabolism , Antioxidants/pharmacology , Bioreactors , Saccharomycetales
3.
Carbohydr Res ; 544: 109247, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39180879

ABSTRACT

The escalation of heavy metal pollutants in soils and effluents, driven by industrialization and human activities, poses significant environmental and health risks. Conventional remediation methods are often costly and ineffective, prompting a shift towards sustainable alternatives such as biological treatments. Natural biosorbents, including microbial cells and their byproducts, have emerged as promising solutions. One such approach involves leveraging exopolysaccharides (EPS), complex high-molecular-weight biopolymers synthesized by microbes under environmental stress conditions. EPS are intricate organic macromolecules comprising proteins, polysaccharides, uronic acids, humic compounds, and lipids, either located within microbial cells or secreted into their surroundings. Their anionic functional groups enable efficient electrostatic binding of cationic heavy metals, making EPS effective biosorbents for soil remediation. This review thoroughly explores the pivotal role of bacterial EPS in the removal of heavy metals, focusing on EPS biosynthesis mechanisms, the dynamics of interaction with heavy metals, and case studies that illustrate their effectiveness in practical remediation strategies. By highlighting these aspects, the review underscores the innovation and practical implications of EPS-based bioremediation technologies, demonstrating their potential to address critical environmental challenges effectively while paving the way for sustainable environmental management practices. Key findings reveal that EPS exhibit robust metal-binding capacities, facilitated by their anionic functional groups, thereby offering a promising solution for mitigating metal pollution in diverse environmental matrices.


Subject(s)
Bacteria , Environmental Restoration and Remediation , Metals, Heavy , Polysaccharides, Bacterial , Soil Pollutants , Soil Pollutants/metabolism , Soil Pollutants/toxicity , Environmental Restoration and Remediation/methods , Environmental Restoration and Remediation/standards , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/metabolism , Metals, Heavy/metabolism , Structure-Activity Relationship , Bacteria/chemistry , Bacteria/metabolism
4.
Lett Appl Microbiol ; 77(9)2024 Sep 02.
Article in English | MEDLINE | ID: mdl-39147561

ABSTRACT

Xanthan gum is a microbial polysaccharide produced by Xanthomonas and widely used in various industries. To produce xanthan gum, the native Xanthomonas citri-386 was used in a cheese-whey-based culture medium. The culture conditions were investigated in batch experiments based on the response surface methodology to increase xanthan production and viscosity. Three independent variables in this study included feeding times of acetate, pyruvate, and citrate. The maximum xanthan gum production and viscosity within 120 h by X. citri-386 using Box-Behnken design were 25.7 g/l and 65 500 cP, respectively, with a 151% and 394% increase as compared to the control sample. Overall, the findings of this study recommend the use of X. citri-386 in the cheese-whey-based medium as an economical medium with optimal amounts of acetate, pyruvate, and citrate for commercial production of xanthan gum on an industrial scale. The adjustment of the pyruvate and acetate concentrations optimized xanthan gum production in the environment.


Subject(s)
Acetates , Citric Acid , Culture Media , Polysaccharides, Bacterial , Pyruvic Acid , Xanthomonas , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism , Xanthomonas/metabolism , Xanthomonas/growth & development , Pyruvic Acid/metabolism , Citric Acid/metabolism , Culture Media/chemistry , Acetates/metabolism , Viscosity
5.
Arch Microbiol ; 206(9): 388, 2024 Aug 28.
Article in English | MEDLINE | ID: mdl-39196410

ABSTRACT

Bacterial exopolysaccharides (EPS) are biopolymers of carbohydrates, often released from cells into the extracellular environment. Due to their distinctive physicochemical properties, biocompatibility, biodegradability, and non-toxicity, EPS finds applications in various industrial sectors. However, the need for alternative EPS has grown over the past few decades as lactic acid bacteria's (LAB) low-yield EPS is unable to meet the demand. In this case, rhizosphere bacteria with the diverse communities in soil leading to variations in composition and structure, are recognized as a potential source of EPS applicable in various industries. In addition, media components and cultivation conditions have an impact on EPS production, which ultimately affects the quantity, structure, and biological functions of the EPS. Therefore, scientists are currently working on manipulating bacterial EPS by developing cultures and applying abiotic and biotic stresses, so that better production of exopolysaccharides can be attained. This review highlights the composition, biosynthesis, and effects of environmental factors on EPS production along with the potential applications in different fields of industry. Ultimately, an overview of potential future paths and tactics for improving EPS implementation and commercialization is pointed out.


Subject(s)
Polysaccharides, Bacterial , Rhizosphere , Soil Microbiology , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism , Bacteria/metabolism
6.
J Agric Food Chem ; 72(36): 19748-19765, 2024 Sep 11.
Article in English | MEDLINE | ID: mdl-39194315

ABSTRACT

Exopolysaccharides (EPSs) produced by Lactobacillus have important physiological activities and are commonly used as novel prebiotics. A strain of Lactobacillus with high EPS yield was identified as Schleiferilactobacillus harbinensis (S. harbinensis Z171), which was isolated from Chinese sauerkraut. The objective of this study was to investigate the in vitro simulated digestion and fecal fermentation behavior of the purified exopolysaccharide fraction F-EPS1A from S. harbinensis Z171 and its influence on the human intestinal flora composition. The in vitro digestion results showed that the primary structural characteristics of F-EPS1A, such as morphology, molecular weight, and monosaccharide composition remained stable after saliva and gastrointestinal digestion. Compared with the blank group, the fermentation of F-SPS1A by fecal microbiota decreased the diversity of the bacterial communities, significantly promoted the relative abundance of Bifidobacterium and Faecalibacterium, and decreased the relative abundance of Lachnospiraceae_Clostridium, Fusobacterium, and Oscillospira. Reverse transcription polymerase chain reaction (RT-PCR) analysis also showed that the population of Bifidobacterium markedly increased. Furthermore, the total short-chain fatty acid levels increased significantly, especially for butyric acid. Gas chromatography-mass spectrometry (GC-MS) results showed that F-EPS1A could be fermented by the human gut microbiota to synthesize organic acids and derivative metabolites that are beneficial to gut health. Therefore, these findings suggest that F-EPS1A could be exploited as a potential prebiotic.


Subject(s)
Digestion , Feces , Fermentation , Gastrointestinal Microbiome , Polysaccharides, Bacterial , Humans , Feces/microbiology , Feces/chemistry , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/biosynthesis , Gastrointestinal Tract/metabolism , Gastrointestinal Tract/microbiology , Prebiotics/analysis , Lactobacillus/metabolism , Models, Biological , Fatty Acids, Volatile/metabolism
7.
Int J Biol Macromol ; 278(Pt 3): 134400, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39122076

ABSTRACT

Bacteria can synthesize a broad spectrum of multifunctional polysaccharides including extracellular polysaccharides (EPS). Bacterial EPS can be utilized in the food, pharmaceutical, and biomedical areas owing to their physical and rheological properties in addition to generally presenting low toxicity. From an ecological viewpoint, EPS are biodegradable and environment compatible, offering several advantages over synthetic compounds. This study investigated the EPS produced by Klebsiella oxytoca (KO-EPS) by chemically characterizing and evaluating its properties. The monosaccharide components of the KO-EPS were determined by HPLC coupled with a refractive index detector and GC-MS. The KO-EPS was then analyzed by methylation analysis, FT-IR and NMR spectroscopy to give a potential primary structure. KO-EPS demonstrated the ability to stabilize hydrophilic emulsions with various hydrophobic compounds, including hydrocarbons and vegetable and mineral oils. In terms of iron chelation capacity, the KO-EPS could sequester 41.9 % and 34.1 % of the most common iron states, Fe2+ and Fe3+, respectively. Moreover, KO-EPS exhibited an improvement in the viscosity of aqueous dispersion, being proportional to the increase in its concentration and presenting a non-Newtonian pseudoplastic flow behavior. KO-EPS also did not present a cytotoxic effect indicating that the KO-EPS could have potential applications as a natural thickener, bioemulsifier, and bioremediation agent.


Subject(s)
Biodegradation, Environmental , Emulsions , Klebsiella oxytoca , Polysaccharides, Bacterial , Rheology , Klebsiella oxytoca/metabolism , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/biosynthesis , Emulsifying Agents/chemistry , Emulsifying Agents/metabolism , Biotechnology/methods , Viscosity , Hydrophobic and Hydrophilic Interactions
8.
Sci Rep ; 14(1): 18781, 2024 08 13.
Article in English | MEDLINE | ID: mdl-39138326

ABSTRACT

Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial blight in rice. Polyhydroxyalkanoates (PHAs) consitute a diverse group of biopolyesters synthesized by bacteria under nutrient-limited conditions. The phaC gene is important for PHA polymerization. We investigated the effects of phaC gene mutagensis in Xoo strain PXO99A. The phaC gene knock-out mutant exhibited reduced swarming ability relative to that of the wild-type. Under conditions where glucose was the sole sugar source, extracellular polysaccharide (EPS) production by ΔphaC declined by 44.8%. ΔphaC showed weak hypersensitive response (HR) induction in the leaves of non-host Nicotiana tabacum, concomitant with downregulation of hpa1 gene expression. When inoculated in rice leaves by the leaf-clipping method, ΔphaC displayed reduced virulence in terms of lesion length compared with the wild-type strain. The complemented strain showed no significant difference from the wild-type strain, suggesting that the deletion of phaC in Xoo induces significant alterations in various physiological and biological processes. These include bacterial swarming ability, EPS production, transcription of hrp genes, and glucose metabolism. These changes are intricately linked to the energy utilization and virulence of Xoo during plant infection. These findings revealed involvement of phaC in Xoo is in the maintaining carbon metabolism by functioning in the PHA metabolic pathway.


Subject(s)
Bacterial Proteins , Carbon , Oryza , Plant Diseases , Polysaccharides, Bacterial , Xanthomonas , Xanthomonas/pathogenicity , Xanthomonas/genetics , Xanthomonas/metabolism , Oryza/microbiology , Carbon/metabolism , Plant Diseases/microbiology , Virulence/genetics , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/biosynthesis , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Mutation , Gene Expression Regulation, Bacterial , Polyhydroxyalkanoates/biosynthesis , Polyhydroxyalkanoates/metabolism , Nicotiana/microbiology , Plant Leaves/microbiology
9.
BMC Biotechnol ; 24(1): 58, 2024 Aug 22.
Article in English | MEDLINE | ID: mdl-39174975

ABSTRACT

Based on our previous findings that salicylic acid and jasmonic acid increased Nostoc flagelliforme polysaccharide yield by regulating intracellular nitric oxide (NO) levels, the mechanism through which NO affects polysaccharide biosynthesis in Nostoc flagelliforme was explored from the perspective of S-nitrosylation (SNO). The addition of NO donor and scavenger showed that intracellular NO had a significant positive effect on the polysaccharide yield of N. flagelliforme. To explore the mechanism, we investigated the relationship between NO levels and the activity of several key enzymes involved in polysaccharide biosynthesis, including fructose 1,6-bisphosphate aldolase (FBA), glucokinase (GK), glucose 6-phosphate dehydrogenase (G6PDH), mitochondrial isocitrate dehydrogenase (ICDH), and UDP-glucose dehydrogenase (UGDH). The enzymatic activities of G6PDH, ICDH, and UGDH were shown to be significantly correlated with the shifts in intracellular NO levels. For further validation, G6PDH, ICDH, and UGDH were heterologously expressed in Escherichia coli and purified via Ni+-NAT affinity chromatography, and subjected to a biotin switch assay and western blot analysis, which revealed that UGDH and G6PDH were susceptible to SNO. Furthermore, mass spectrometry analysis of proteins treated with S-nitrosoglutathione (GSNO) identified the SNO modification sites for UGDH and G6PDH as cysteine 423 and cysteine 249, respectively. These findings suggest that NO modulates polysaccharide biosynthesis in N. flagelliforme through SNO of UGDH and G6PDH. This reveals a potential mechanism through which NO promotes polysaccharide synthesis in N. flagelliforme, while also providing a new strategy for improving the industrial production of polysaccharides.


Subject(s)
Nitric Oxide , Nostoc , Nostoc/metabolism , Nostoc/enzymology , Nostoc/genetics , Nitric Oxide/metabolism , Glucosephosphate Dehydrogenase/metabolism , Glucosephosphate Dehydrogenase/genetics , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/biosynthesis , Polysaccharides/metabolism , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Escherichia coli/genetics , Escherichia coli/metabolism
10.
Nat Commun ; 15(1): 6504, 2024 Aug 02.
Article in English | MEDLINE | ID: mdl-39090110

ABSTRACT

The bacterial genus Salmonella includes diverse isolates with multiple variations in the structure of the main polysaccharide component (O antigen) of membrane lipopolysaccharides. In addition, some isolates produce a transient (T) antigen, such as the T1 polysaccharide identified in the 1960s in an isolate of Salmonella enterica Paratyphi B. The structure and biosynthesis of the T1 antigen have remained enigmatic. Here, we use biophysical, biochemical and genetic methods to show that the T1 antigen is a complex linear glycan containing tandem homopolymeric domains of galactofuranose and ribofuranose, linked to lipid A-core, like a typical O antigen. T1 is a phase-variable antigen, regulated by recombinational inversion of the promoter upstream of the T1 genetic locus through a mechanism not observed for other bacterial O antigens. The T1 locus is conserved across many Salmonella isolates, but is mutated or absent in most typhoidal serovars and in serovar Enteritidis.


Subject(s)
O Antigens , O Antigens/genetics , O Antigens/metabolism , O Antigens/biosynthesis , Salmonella/genetics , Salmonella/metabolism , Gene Expression Regulation, Bacterial , Serogroup , Promoter Regions, Genetic , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism
11.
Int J Mol Sci ; 25(14)2024 Jul 11.
Article in English | MEDLINE | ID: mdl-39062838

ABSTRACT

LuxR-type regulators play pivotal roles in regulating numerous bacterial processes, including bacterial motility and virulence, thereby exerting a significant influence on bacterial behavior and pathogenicity. Xanthomonas oryzae pv. oryzicola, a rice pathogen, causes bacterial leaf streak. Our research has identified VmsR, which is a response regulator of the two-component system (TCS) that belongs to the LuxR family. These findings of the experiment reveal that VmsR plays a crucial role in regulating pathogenicity, motility, biofilm formation, and the production of extracellular polysaccharides (EPSs) in Xoc GX01. Notably, our study shows that the vmsR mutant exhibits a reduced swimming motility but an enhanced swarming motility. Furthermore, this mutant displays decreased virulence while significantly increasing EPS production and biofilm formation. We have uncovered that VmsR directly interacts with the promoter regions of fliC and fliS, promoting their expression. In contrast, VmsR specifically binds to the promoter of gumB, resulting in its downregulation. These findings indicate that the knockout of vmsR has profound effects on virulence, motility, biofilm formation, and EPS production in Xoc GX01, providing insights into the intricate regulatory network of Xoc.


Subject(s)
Bacterial Proteins , Biofilms , Gene Expression Regulation, Bacterial , Polysaccharides, Bacterial , Xanthomonas , Xanthomonas/pathogenicity , Xanthomonas/genetics , Xanthomonas/metabolism , Biofilms/growth & development , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/biosynthesis , Virulence/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Trans-Activators/genetics , Trans-Activators/metabolism , Oryza/microbiology , Plant Diseases/microbiology , Promoter Regions, Genetic , Repressor Proteins/genetics , Repressor Proteins/metabolism
12.
Int J Biol Macromol ; 278(Pt 1): 133672, 2024 Oct.
Article in English | MEDLINE | ID: mdl-38971276

ABSTRACT

Bioemulsifiers are compounds produced by microorganisms that reduce the interfacial forces between hydrophobic substances and water. Due to their potential in the pharmaceutical and food industries and their efficiency in oil spill remediation, they have been the subject of study in the scientific community while being safe, biodegradable, and sustainable compared to synthetic options. These biomolecules have high molecular weight and polymeric structures, distinguishing them from traditional biosurfactants. Emulsan, a bioemulsifier exopolysaccharide, is produced by Acinetobacter strains and is highly efficient in forming stable emulsions. Its low toxicity and high potential as an emulsifying agent promote its application in pharmaceutical and food industries as a drug-delivery vehicle and emulsion stabilizer. Due to the high environmental impact of oil spills, bioemulsifiers have great potential for environmental applications, such as bioremediation. This unique feature gives them a distinct mechanism of action in forming emulsions, resulting in minimal environmental impact. A better understanding of these aspects can improve the use of bioemulsifiers and environmental remediation in various industries. This review will discuss the production and characterization of Emulsan, focusing on recent advancements in cultivation conditions, purification techniques, compound identification, and ecotoxicity.


Subject(s)
Biodegradation, Environmental , Emulsifying Agents , Emulsifying Agents/chemistry , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/isolation & purification , Emulsions , Surface-Active Agents/chemistry , Acinetobacter/metabolism
13.
J Bacteriol ; 206(8): e0016924, 2024 Aug 22.
Article in English | MEDLINE | ID: mdl-39007563

ABSTRACT

Bacteria embellish their cell envelopes with a variety of specialized polysaccharides. Biosynthesis pathways for these glycans are complex, and final products vary greatly in their chemical structures, physical properties, and biological activities. This tremendous diversity comes from the ability to arrange complex pools of monosaccharide building blocks into polymers with many possible linkage configurations. Due to the complex chemistry of bacterial glycans, very few biosynthetic pathways have been defined in detail. As part of an initiative to characterize novel polysaccharide biosynthesis enzymes, we isolated a bacterium from Lake Michigan called Sphingomonas sp. LM7 that is proficient in exopolysaccharide (EPS) production. We identified genes that contribute to EPS biosynthesis in LM7 by screening a transposon mutant library for colonies displaying altered colony morphology. A gene cluster was identified that appears to encode a complete wzy/wzx-dependent polysaccharide assembly pathway. Deleting individual genes in this cluster caused a non-mucoid phenotype and a corresponding loss of EPS secretion, confirming the role of this gene cluster in polysaccharide production. We extracted EPS from LM7 cultures and determined that it contains a linear chain of 3- and 4-linked glucose, galactose, and glucuronic acid residues. Finally, we show that the EPS pathway in Sphingomonas sp. LM7 diverges from that of sphingan-family EPSs and adhesive polysaccharides such as the holdfast that are present in other Alphaproteobacteria. Our approach of characterizing complete biosynthetic pathways holds promise for engineering polysaccharides with valuable properties. IMPORTANCE: Bacteria produce complex polysaccharides that serve a range of biological functions. These polymers often have properties that make them attractive for industrial applications, but they remain woefully underutilized. In this work, we studied a novel polysaccharide called promonan that is produced by Sphingomonas sp. LM7, a bacterium we isolated from Lake Michigan. We extracted promonan from LM7 cultures and identified which sugars are present in the polymer. We also identified the genes responsible for polysaccharide production. Comparing the promonan genes to those of other bacteria showed that promonan is distinct from previously characterized polysaccharides. We conclude by discussing how the promonan pathway could be used to produce new polysaccharides through genetic engineering.


Subject(s)
Multigene Family , Polysaccharides, Bacterial , Sphingomonas , Sphingomonas/genetics , Sphingomonas/metabolism , Sphingomonas/isolation & purification , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/biosynthesis , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biosynthetic Pathways/genetics , Fresh Water/microbiology , Lakes/microbiology
14.
mBio ; 15(8): e0003824, 2024 Aug 14.
Article in English | MEDLINE | ID: mdl-38958440

ABSTRACT

The physiology and ecology of particle-associated marine bacteria are of growing interest, but our knowledge of their aggregation behavior and mechanisms controlling their association with particles remains limited. We have found that a particle-associated isolate, Alteromonas sp. ALT199 strain 4B03, and the related type-strain A. macleodii 27126 both form large (>500 µm) aggregates while growing in rich medium. A non-clumping variant (NCV) of 4B03 spontaneously arose in the lab, and whole-genome sequencing revealed a partial deletion in the gene encoding UDP-glucose-4-epimerase (galEΔ308-324). In 27126, a knock-out of galE (ΔgalE::kmr) resulted in a loss of aggregation, mimicking the NCV. Microscopic analysis shows that both 4B03 and 27126 rapidly form large aggregates, whereas their respective galE mutants remain primarily as single planktonic cells or clusters of a few cells. Strains 4B03 and 27126 also form aggregates with chitin particles, but their galE mutants do not. Alcian Blue staining shows that 4B03 and 27126 produce large transparent exopolymer particles (TEP), but their galE mutants are deficient in this regard. This study demonstrates the capabilities of cell-cell aggregation, aggregation of chitin particles, and production of TEP in strains of Alteromonas, a widespread particle-associated genus of heterotrophic marine bacteria. A genetic requirement for galE is evident for each of the above capabilities, expanding the known breadth of requirement for this gene in biofilm-related processes. IMPORTANCE: Heterotrophic marine bacteria have a central role in the global carbon cycle. Well-known for releasing CO2 by decomposition and respiration, they may also contribute to particulate organic matter (POM) aggregation, which can promote CO2 sequestration via the formation of marine snow. We find that two members of the prevalent particle-associated genus Alteromonas can form aggregates comprising cells alone or cells and chitin particles, indicating their ability to drive POM aggregation. In line with their multivalent aggregation capability, both strains produce TEP, an excreted polysaccharide central to POM aggregation in the ocean. We demonstrate a genetic requirement for galE in aggregation and large TEP formation, building our mechanistic understanding of these aggregative capabilities. These findings point toward a role for heterotrophic bacteria in POM aggregation in the ocean and support broader efforts to understand bacterial controls on the global carbon cycle based on microbial activities, community structure, and meta-omic profiling.


Subject(s)
Alteromonas , UDPglucose 4-Epimerase , Alteromonas/genetics , Alteromonas/enzymology , Alteromonas/metabolism , UDPglucose 4-Epimerase/genetics , UDPglucose 4-Epimerase/metabolism , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/genetics , Aquatic Organisms/genetics , Aquatic Organisms/metabolism , Seawater/microbiology , Whole Genome Sequencing
15.
Int J Mol Sci ; 25(13)2024 Jun 29.
Article in English | MEDLINE | ID: mdl-39000292

ABSTRACT

Latilactobacillus (L.) sakei is a species of lactic acid bacteria (LAB) mostly studied according to its application in food fermentation. Previously, L. sakei L3 was isolated by our laboratory and possessed the capability of high exopolysaccharide (EPS) yield during sucrose-added fermentation. However, the understanding of sucrose promoting EPS production is still limited. Here, we analyzed the growth characteristics of L. sakei L3 and alterations of its transcriptional profiles during sucrose-added fermentation. The results showed that L. sakei L3 could survive between pH 4.0 and pH 9.0, tolerant to NaCl (<10%, w/v) and urea (<6%, w/v). Meanwhile, transcriptomic analysis showed that a total of 426 differentially expressed genes and eight non-coding RNAs were identified. Genes associated with sucrose metabolism were significantly induced, so L. sakei L3 increased the utilization of sucrose to produce EPS, while genes related to uridine monophosphate (UMP), fatty acids and folate synthetic pathways were significantly inhibited, indicating that L. sakei L3 decreased self-growth, substance and energy metabolism to satisfy EPS production. Overall, transcriptome analysis provided valuable insights into the mechanisms by which L. sakei L3 utilizes sucrose for EPS biosynthesis. The study provided a theoretical foundation for the further application of functional EPS in the food industry.


Subject(s)
Fermentation , Gene Expression Profiling , Gene Expression Regulation, Bacterial , Latilactobacillus sakei , Polysaccharides, Bacterial , Sucrose , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism , Sucrose/metabolism , Latilactobacillus sakei/metabolism , Latilactobacillus sakei/genetics , Transcriptome , Hydrogen-Ion Concentration
16.
FASEB J ; 38(13): e23763, 2024 Jul 15.
Article in English | MEDLINE | ID: mdl-38954404

ABSTRACT

Riemerella anatipestifer is a pathogenic bacterium that causes duck serositis and meningitis, leading to significant harm to the duck industry. To escape from the host immune system, the meningitis-causing bacteria must survive and multiply in the bloodstream, relying on specific virulence factors such as capsules. Therefore, it is essential to study the genes involved in capsule biosynthesis in R. anatipestifer. In this study, we successfully constructed gene deletion mutants Δ3820 and Δ3830, targeting the GE296_RS03820 and GE296_RS03830 genes, respectively, using the RA-LZ01 strain as the parental strain. The growth kinetics analysis revealed that these two genes contribute to bacterial growth. Transmission and scanning electron microscopy (TEM and SEM) and silver staining showed that Δ3820 and Δ3830 produced the altered capsules and compounds of capsular polysaccharides (CPSs). Serum resistance test showed the mutants also exhibited reduced C3b deposition and decreased resistance serum killing. In vivo, Δ3820 and Δ3830 exhibited markedly declining capacity to cross the blood-brain barrier, compared to RA-LZ01. These findings indicate that the GE296_RS03820 and GE296_RS03830 genes are involved in CPSs biosynthesis and play a key role in the pathogenicity of R. anatipestifer. Furthermore, Δ3820 and Δ3830 mutants presented a tendency toward higher survival rates from RA-LZ01 challenge in vivo. Additionally, sera from ducklings immunized with the mutants showed cross-immunoreactivity with different serotypes of R. anatipestifer, including 1, 2, 7 and 10. Western blot and SDS-PAGE assays revealed that the altered CPSs of Δ3820 and Δ3830 resulted in the exposure of some conserved proteins playing the key role in the cross-immunoreactivity. Our study clearly demonstrated that the GE296_RS03820 and GE296_RS03830 genes are involved in CPS biosynthesis in R. anatipestifer and the capsule is a target for attenuation in vaccine development.


Subject(s)
Bacterial Capsules , Ducks , Flavobacteriaceae Infections , Riemerella , Riemerella/genetics , Riemerella/pathogenicity , Riemerella/metabolism , Animals , Ducks/microbiology , Bacterial Capsules/genetics , Bacterial Capsules/metabolism , Flavobacteriaceae Infections/microbiology , Flavobacteriaceae Infections/veterinary , Poultry Diseases/microbiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Polysaccharides, Bacterial/biosynthesis , Virulence Factors/genetics , Gene Deletion
17.
Nat Commun ; 15(1): 5258, 2024 Jun 19.
Article in English | MEDLINE | ID: mdl-38898034

ABSTRACT

Many bacterial pathogens, including the human exclusive pathogen Salmonella Typhi, express capsular polysaccharides as a crucial virulence factor. Here, through S. Typhi whole genome sequence analyses and functional studies, we found a list of single point mutations that make S. Typhi hypervirulent. We discovered a single point mutation in the Vi biosynthesis enzymes that control Vi polymerization or acetylation is enough to result in different capsule variants of S. Typhi. All variant strains are pathogenic, but the hyper Vi capsule variants are particularly hypervirulent, as demonstrated by the high morbidity and mortality rates observed in infected mice. The hypo Vi capsule variants have primarily been identified in Africa, whereas the hyper Vi capsule variants are distributed worldwide. Collectively, these studies increase awareness about the existence of different capsule variants of S. Typhi, establish a solid foundation for numerous future studies on S. Typhi capsule variants, and offer valuable insights into strategies to combat capsulated bacteria.


Subject(s)
Bacterial Capsules , Mutation, Missense , Polysaccharides, Bacterial , Salmonella typhi , Typhoid Fever , Salmonella typhi/genetics , Salmonella typhi/pathogenicity , Animals , Mice , Virulence/genetics , Polysaccharides, Bacterial/genetics , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism , Bacterial Capsules/genetics , Bacterial Capsules/metabolism , Typhoid Fever/microbiology , Humans , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Virulence Factors/genetics , Virulence Factors/metabolism , Female , Whole Genome Sequencing
18.
Int J Biol Macromol ; 271(Pt 1): 132634, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38797297

ABSTRACT

This investigation centers on the synthesis of a polysaccharide-protein blend produced by an isolated native strain (99.12 % phylogenetic affinity with Bacillus arachidis SY8(T)). The primary objective was to investigate the production of extracellular polymeric substances (EPS) under diverse stress conditions, encompassing exposure to heavy metal ions, salt, and toxic agents. Additionally, the impact of environmental parameters, namely pH, inoculation percentage, and time, on the production was investigated. Subsequently, the study examined the biosorption potential of the EPS produced for Pb(II), Cu(II), and Mn(II). The EPS obtained was thoroughly characterized via various tests. Rheological evaluations of an EPS solution (2 wt%) confirmed its pseudo-plastic and non-Newtonian fluid properties, while TGA analysis demonstrated its thermal stability up to 600 °C. Additional analyses, including GPC, FTIR, and H-NMR, provide further insights into the produced EPS. The best conditions for EPS production are determined: 5 % NaCl salt, serving as an effective stress inducer, and 37 °C, pH 6, with a 5 % inoculation, over 96 h. EPS demonstrates remarkable removal efficiencies of 99.9, 99.4 and 78.9 % for Pb(II), Cu(II), and Mn(II), respectively. These findings highlight the potential of EPS as an effective agent for removing heavy metal ions.


Subject(s)
Bacillus , Metals, Heavy , Polysaccharides, Bacterial , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/isolation & purification , Adsorption , Bacillus/metabolism , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Hydrogen-Ion Concentration , Biodegradation, Environmental , Water Pollutants, Chemical/isolation & purification , Water Pollutants, Chemical/metabolism
19.
J Microbiol Biotechnol ; 34(6): 1239-1248, 2024 Jun 28.
Article in English | MEDLINE | ID: mdl-38783698

ABSTRACT

Peatlands are marginal agricultural lands due to highly acidic soil conditions and poor drainage systems. Drought stress is a big problem in peatlands as it can affect plants through poor root development, so technological innovations are needed to increase the productivity and sustainability of upland rice on peatlands. Rhizobacteria can overcome the effects of drought stress by altering root morphology, regulating stress-responsive genes, and producing exopolysaccharides and indole acetic acid (IAA). This study aimed to determine the ability of rhizobacteria in upland rice to produce exopolysaccharides and IAA, identify potential isolates using molecular markers, and prove the effect of rhizobacteria on viability and vigor index in upland rice. Rhizobacterial isolates were grown on yeast extract mannitol broth (YEMB) medium for exopolysaccharides production testing and Nutrient Broth (NB)+L-tryptophan medium for IAA production testing. The selected isolates identify using sequence 16S rRNA. The variables observed in testing the effect of rhizobacteria were germination ability, vigour index, and growth uniformity. EPS-1 isolate is the best production of exopolysaccharides (41.6 mg/ml) and IAA (60.83 ppm). The isolate EPS-1 was identified as Klebsiella variicola using 16S rRNA sequencing and phylogenetic analysis. The isolate EPS-1 can increase the viability and vigor of upland rice seeds. K. variicola is more adaptive and has several functional properties that can be developed as a potential bioagent or biofertilizer to improve soil nutrition, moisture and enhance plant growth. The use of rhizobacteria can reduce dependence on the use of synthetic materials with sustainable agriculture.


Subject(s)
Droughts , Indoleacetic Acids , Oryza , Phylogeny , Plant Roots , Polysaccharides, Bacterial , RNA, Ribosomal, 16S , Soil Microbiology , Oryza/microbiology , Indoleacetic Acids/metabolism , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/biosynthesis , RNA, Ribosomal, 16S/genetics , Plant Roots/microbiology , Stress, Physiological , Klebsiella/genetics , Klebsiella/metabolism , Klebsiella/isolation & purification , Germination
20.
Microb Cell Fact ; 23(1): 158, 2024 May 30.
Article in English | MEDLINE | ID: mdl-38812023

ABSTRACT

BACKGROUND: This study explores the biosynthesis, characteristics, and functional properties of exopolysaccharide produced by the strain Liquorilactobacillus mali T6-52. The strain demonstrated significant EPS production with a non-ropy phenotype. RESULTS: The genomic analysis unveiled genes associated with EPS biosynthesis, shedding light on the mechanism behind EPS production. These genes suggest a robust EPS production mechanism, providing insights into the strain's adaptability and ecological niche. Chemical composition analysis identified the EPS as a homopolysaccharide primarily composed of glucose, confirming its dextran nature. Furthermore, it demonstrated notable functional properties, including antioxidant activity, fat absorption capacity, and emulsifying activity. Moreover, the EPS displayed promising cryoprotective activities, showing notable performance comparable to standard cryoprotective agents. The EPS concentration also demonstrated significant freeze-drying protective effects, presenting it as a potential alternative cryoprotectant for bacterial storage. CONCLUSIONS: The functional properties of L. mali T6-52 EPS reveal promising opportunities across various industrial domains. The strain's safety profile, antioxidant prowess, and exceptional cryoprotective and freeze-drying characteristics position it as an asset in food processing and pharmaceuticals.


Subject(s)
Polysaccharides, Bacterial , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism , Bacillaceae/metabolism , Bacillaceae/genetics , Freeze Drying , Antioxidants/metabolism , Genomics/methods , Cryoprotective Agents/pharmacology , Cryoprotective Agents/metabolism , Genome, Bacterial
SELECTION OF CITATIONS
SEARCH DETAIL