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1.
Proc Biol Sci ; 291(2027): 20240765, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39043241

ABSTRACT

Symbiotic nitrogen (N) fixation (SNF) by legumes and their rhizobial partners is one of the most important sources of bioavailable N to terrestrial ecosystems. While most work on the regulation of SNF has focussed on abiotic drivers such as light, water and soil nutrients, the diversity of rhizobia with which individual legume partners may play an important but under-recognized role in regulating N inputs from SNF. By experimentally manipulating the diversity of rhizobia available to legumes, we demonstrate that rhizobial diversity can increase average SNF rates by more than 90%, and that high rhizobial diversity can induce increased SNF even under conditions of high soil N fertilization. However, the effects of rhizobial diversity, the conditions under which diversity effects were the strongest, and the likely mechanisms driving these diversity effects differed between the two legume species we assessed. These results provide evidence that biodiversity-ecosystem function relationships can occur at the scales of an individual plant and that the effects of rhizobial diversity may be as important as long-established abiotic factors, such as N availability, in driving terrestrial N inputs via SNF.


Subject(s)
Nitrogen Fixation , Nitrogen , Rhizobium , Soil Microbiology , Soil , Symbiosis , Soil/chemistry , Nitrogen/metabolism , Rhizobium/physiology , Rhizobium/metabolism , Fabaceae/microbiology , Biodiversity
2.
BMC Microbiol ; 24(1): 261, 2024 Jul 15.
Article in English | MEDLINE | ID: mdl-39004720

ABSTRACT

BACKGROUND: The excessive application of chemical fertilizers in the cultivation of Astragalus mongholicus Bunge results in a reduction in the quality of the medicinal plant and compromises the sustainable productivity of the soil. PGPB inoculant is a hot topic in ecological agriculture research. In the cultivation of Astragalus mongholicus, the screened nitrogen-fixing bacteria can promote plant growth, however, whether it can promote the accumulation of main bioactive components remains unknown. In this study, mixed inoculants containing 5 strains of growth promoting bacteria (Rhizobium T16 , Sinorhizobium T21 , Bacillus J1 , Bacillus G4 and Arthrobacter J2) were used in the field experiment. The metabolic substances in the root tissues of Astragalus mongholicus were identified during the harvest period by non-targeted metabolomics method, and the differential metabolites between groups were identified by statistical analysis. Meanwhile, high-throughput sequencing was performed to analyze the changes of rhizosphere soil and endophytic microbial community structure after mixed microbial treatment. RESULTS: The results of non-targeted metabolism indicated a significant increase in the levels of 26 metabolites after treatment including 13 flavonoids, 3 saponins and 10 other components. The contents of three plant hormones (abscisic acid, salicylic acid and spermidine) also increased after treatment, which presumed to play an important role in regulating plant growth and metabolism. Studies on endosphere and rhizosphere bacterial communities showed that Rhzobiaceae, Micromonosporaceae, and Hypomicrobiaceae in endophytic, and Oxalobactereae in rhizosphere were significantly increased after treatment. These findings suggest their potential importance in plant growth promotion and secondary metabolism regulation. CONCLUSIONS: This finding provides a basis for developing nitrogen-fixing bacteria fertilizer and improving the ecological planting efficiency of Astragalus mongholicus.


Subject(s)
Astragalus Plant , Microbiota , Plant Roots , Rhizosphere , Soil Microbiology , Plant Roots/microbiology , Plant Roots/metabolism , Astragalus Plant/microbiology , Astragalus Plant/metabolism , Nitrogen-Fixing Bacteria/metabolism , Nitrogen-Fixing Bacteria/genetics , Saponins/metabolism , Bacteria/metabolism , Bacteria/classification , Bacteria/genetics , Metabolomics , Arthrobacter/metabolism , Arthrobacter/genetics , Endophytes/metabolism , Endophytes/genetics , Rhizobium/metabolism
3.
Article in English | MEDLINE | ID: mdl-39037439

ABSTRACT

The species Rhizobium indigoferae and Sinorhizobium kummerowiae were isolated from legume nodules and the 16S rRNA sequences of their respective type strains, CCBAU 71042T and CCBAU 71714T, were highly divergent from those of the other species of the genera Rhizobium and Sinorhizobium, respectively. However, the 16S rRNA gene sequences obtained for strains CCBAU 71042T and CCBAU 71714T several years after description, were different from the original ones, showing 100 % similarity to the type strains of Rhizobium leguminosarum and Sinorhizobium meliloti, respectively. Phylogenetic analyses of two housekeeping genes, recA and atpD, confirmed the high phylogenetic closeness of strains CCBAU 71042T and CCBAU 71714T to the respective type strains of R. leguminosarum and S. meliloti. In the present work, we compared the genomes of the type strains of R. indigoferae and S. kummerowiae available in several culture collections with those of the respective type strains of R. leguminosarum and S. meliloti, some of them obtained in this study. The calculated average nucleotide identity-blast and digital DNA-DNA hybridization values in both cases were higher than those recommended for species differentiation, supporting the proposal for the reclassification of the type strains of R. indigoferae and S. kummerowiae into the species R. leguminosarum and S. meliloti, respectively.


Subject(s)
Bacterial Typing Techniques , DNA, Bacterial , Phylogeny , RNA, Ribosomal, 16S , Rhizobium leguminosarum , Sequence Analysis, DNA , Sinorhizobium meliloti , RNA, Ribosomal, 16S/genetics , DNA, Bacterial/genetics , Sinorhizobium meliloti/genetics , Sinorhizobium meliloti/classification , Rhizobium leguminosarum/genetics , Rhizobium leguminosarum/classification , Genome, Bacterial , Rhizobium/classification , Rhizobium/genetics , Rhizobium/isolation & purification , Root Nodules, Plant/microbiology , Genes, Essential , Genes, Bacterial , Nucleic Acid Hybridization
4.
Curr Microbiol ; 81(9): 283, 2024 Jul 27.
Article in English | MEDLINE | ID: mdl-39066927

ABSTRACT

A novel bacterium designated as SSA5.23T was isolated from seawater. Cells of SSA5.23T are Gram-stain-negative, short, rod-shaped, and exhibit motility via numerous peritrichous flagella. The strain could grow at temperatures ranging from 15 to 35 °C (optimum at 25 °C), in a salinity range of 0-5.0% (w/v) NaCl, and within a pH range of 6.0-9.0 (optimum at pH 7.0). The predominant cellular fatty acid of SSA5.23T was C18:1 ω7c/C18:1 ω6c, and the major respiratory quinones were Q-9 and Q-10. Diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol were identified as the primary polar lipids. The complete genome (5.47 Mb) of SSA5.23T comprises of a circular chromosome of 3.64 Mb and three plasmids, specifically sized at 59.73 kb, 227.82 kb, and 1.54 Mb, respectively. Certain genes located on the plasmids play roles in denitrification, oxidative stress resistance, and osmotic tolerance, which likely contribute to the adaptability of this strain in marine conditions. Core-proteome average amino acid identity analysis effectively identified the strain's affiliation with the genus Affinirhizobium, showing the highest value (89.9%) with Affinirhizobium pseudoryzae DSM 19479T. This classification was further supported by the phylogenetic analysis of concatenated alignment of 170 single-copy orthologous proteins. When compared to related reference strains, SSA5.23T displayed an average nucleotide identity ranging from 74.9 to 80.3% and digital DNA-DNA hybridization values ranging from 19.9 to 23.9%. Our findings confirmed that strain SSA5.23T represents a novel species of the genus Affinirhizobium, for which the name Affinirhizobium gouqiense sp. nov. (type strain SSA5.23T = LMG 32560T = MCCC 1K07165T) was suggested.


Subject(s)
DNA, Bacterial , Fatty Acids , Genome, Bacterial , Phylogeny , Seawater , Seawater/microbiology , China , Fatty Acids/analysis , DNA, Bacterial/genetics , Rhizobium/genetics , Rhizobium/classification , Rhizobium/isolation & purification , Base Composition , Bacterial Typing Techniques , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Islands , Genomics
5.
J Hazard Mater ; 475: 134897, 2024 Aug 15.
Article in English | MEDLINE | ID: mdl-38876018

ABSTRACT

Microplastics (MPs), widely presented in cultivated soil, have caused serious stresses on crop growth. However, the mechanism by which MPs affect legumes and rhizobia symbiosis is still unclear. Here, peanut seedlings were inoculated with Bradyrhizobium zhanjiangense CCBAU 51778 and were grown in vermiculite with 3 %/5 % (w/w) addition of PVC (polyvinyl chloride)-MPs/PBAT (polybutylene adipate)-MPs. PVC-MPs and PBAT-MPs separately decreased nodule number by 33-100 % and 2.62-80.91 %. Transcriptome analysis showed that PVC-MPs affected more DEGs (differentially expressed genes) than PBAT-MPs, indicating PVC-MPs were more devastating for the symbiosis than PBAT-MPs. Functional annotation revealed that PVC-MPs and PBAT-MPs enriched DEGs related to biosynthesis pathways such as flavonoid, isoflavonoid, and phenylpropanoid, in peanut. And when the dose increased from 3 % to 5 %, PVC-MPs mainly enriched the pathways of starch and sucrose metabolism, alanine, aspartate and glutamate metabolism, diterpenoid biosynthesis, etc.; PBAT-MPs enriched cysteine and methionine metabolism, photosynthesis, MAPK signaling, and other pathways. These significantly enriched pathways functioned in reducing nodule number and promoting peanut tolerance to MPs stresses. This study reveals the effect of PVC-MPs and PBAT-MPs on peanut and rhizobium symbiosis, and provides new perspectives for legume production and environmental safety.


Subject(s)
Arachis , Microplastics , Polyvinyl Chloride , Symbiosis , Arachis/microbiology , Arachis/metabolism , Arachis/drug effects , Microplastics/toxicity , Soil Pollutants/toxicity , Soil Pollutants/metabolism , Rhizobium/metabolism , Rhizobium/drug effects , Polyesters/metabolism , Metabolic Networks and Pathways/drug effects , Bradyrhizobium/metabolism , Bradyrhizobium/drug effects
6.
Bioresour Technol ; 404: 130918, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38823562

ABSTRACT

Symbiosis between Glycine max and Bradyrhizobium diazoefficiens were used as a model system to investigate whether biohydrogen utilization promotes the transformation of the tetrachlorobiphenyl PCB77. Both a H2 uptake-positive (Hup+) strain (wild type) and a Hup- strain (a hupL deletion mutant) were inoculated into soybean nodules. Compared with Hup- nodules, Hup+ nodules increased dechlorination significantly by 61.1 % and reduced the accumulation of PCB77 in nodules by 37.7 % (p < 0.05). After exposure to nickel, an enhancer of uptake hydrogenase, dechlorination increased significantly by 2.2-fold, and the accumulation of PCB77 in nodules decreased by 54.4 % (p < 0.05). Furthermore, the tetrachlorobiphenyl transformation in the soybean root nodules was mainly testified to be mediated by nitrate reductase (encoded by the gene NR) for tetrachlorobiphenyl dechlorination and biphenyl-2,3-diol 1,2-dioxygenase (bphC) for biphenyl degradation. This study demonstrates for the first time that biohydrogen utilization has a beneficial effect on tetrachlorobiphenyl biotransformation in a legume-rhizobium symbiosis.


Subject(s)
Glycine max , Hydrogen , Polychlorinated Biphenyls , Symbiosis , Polychlorinated Biphenyls/metabolism , Symbiosis/physiology , Glycine max/metabolism , Glycine max/microbiology , Hydrogen/metabolism , Rhizobium/physiology , Biotransformation , Bradyrhizobium/metabolism , Bradyrhizobium/physiology , Biodegradation, Environmental
7.
Sci Total Environ ; 945: 173923, 2024 Oct 01.
Article in English | MEDLINE | ID: mdl-38880144

ABSTRACT

Rhizobium inoculation has been widely applied to alleviate heavy metal (HM) stress in legumes grown in contaminated soils, but it has generated inconsistent results with regard to HM accumulation in plant tissues. Here, we conducted a meta-analysis to assess the performance of Rhizobium inoculation for regulating HM in legumes and reveal the general influencing factors and processes. The meta-analysis showed that Rhizobium inoculation in legumes primarily increased the total HM uptake by stimulating plant biomass growth rather than HM phytoavailability. Inoculation had no significant effect on the average shoot HM concentration (p > 0.05); however, it significantly increased root HM uptake by 61 % and root HM concentration by 7 % (p < 0.05), indicating safe agricultural production while facilitating HM phytostabilisation. Inoculation decreased shoot HM concentrations and increased root HM uptake in Vicia, Medicago and Glycine, whereas it increased shoot HM concentrations in Sulla, Cicer and Vigna. The effects of inoculation on shoot biomass were suppressed by nitrogen fertiliser and native microorganisms, and the effect on shoot HM concentration was enhanced by high soil pH, organic matter content, and phosphorous content. Inoculation-boosted shoot nutrient concentration was positively correlated with increased shoot biomass, whereas the changes in pH and organic matter content were insufficient to significantly affect accumulation outcomes. Nitrogen content changes in the soil were positively correlated with changes in root HM concentration and uptake, whereas nitrogen translocation changes in the tissues were positively correlated with changes in HM translocation. Phosphorus solubilisation could improve HM phytoavailability at the expense of slight biomass promotion. These results suggest that the diverse growth-promoting characteristics of Rhizobia influence the trade-off between biomass-HM phytoavailability and HM translocation, impacting HM accumulation outcomes. Our findings can assist in optimising the utilisation of legume-Rhizobium systems in HM-contaminated soils.


Subject(s)
Fabaceae , Metals, Heavy , Rhizobium , Soil Pollutants , Fabaceae/metabolism , Soil Pollutants/metabolism , Metals, Heavy/metabolism , Rhizobium/physiology , Biodegradation, Environmental , Soil/chemistry , Plant Roots/microbiology , Plant Roots/metabolism
8.
Plant J ; 119(3): 1508-1525, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38923649

ABSTRACT

Legumes have evolved a nitrogen-fixing symbiotic interaction with rhizobia, and this association helps them to cope with the limited nitrogen conditions in soil. The compatible interaction between the host plant and rhizobia leads to the formation of root nodules, wherein internalization and transition of rhizobia into their symbiotic form, termed bacteroids, occur. Rhizobia in the nodules of the Inverted Repeat-Lacking Clade legumes, including Medicago truncatula, undergo terminal differentiation, resulting in elongated and endoreduplicated bacteroids. This transition of endocytosed rhizobia is mediated by a large gene family of host-produced nodule-specific cysteine-rich (NCR) peptides in M. truncatula. Few NCRs have been recently found to be essential for complete differentiation and persistence of bacteroids. Here, we show that a M. truncatula symbiotic mutant FN9285, defective in the complete transition of rhizobia, is deficient in a cluster of NCR genes. More specifically, we show that the loss of the duplicated genes NCR086 and NCR314 in the A17 genotype, found in a single copy in Medicago littoralis R108, is responsible for the ineffective symbiotic phenotype of FN9285. The NCR086 and NCR314 gene pair encodes the same mature peptide but their transcriptional activity varies considerably. Nevertheless, both genes can restore the effective symbiosis in FN9285 indicating that their complementation ability does not depend on the strength of their expression activity. The identification of the NCR086/NCR314 peptide, essential for complete bacteroid differentiation, has extended the list of peptides, from a gene family of several hundred members, that are essential for effective nitrogen-fixing symbiosis in M. truncatula.


Subject(s)
Medicago truncatula , Multigene Family , Plant Proteins , Root Nodules, Plant , Symbiosis , Medicago truncatula/microbiology , Medicago truncatula/genetics , Medicago truncatula/physiology , Root Nodules, Plant/microbiology , Root Nodules, Plant/genetics , Symbiosis/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Gene Expression Regulation, Plant , Rhizobium/physiology , Rhizobium/genetics , Nitrogen Fixation/genetics , Peptides/metabolism , Peptides/genetics , Sinorhizobium meliloti/physiology , Sinorhizobium meliloti/genetics , Cysteine/metabolism
9.
Microbiol Res ; 285: 127762, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38763015

ABSTRACT

Plants coexist with a diverse array of microorganisms, predominantly bacteria and fungi, in both natural and agricultural environments. While some microorganisms positively influence plant development and yield, others can cause harm to the host, leading to significant adverse impacts on the environment and the economy. Plant growth-promoting microorganisms (PGPM), including plant growth-promoting bacteria, arbuscular mycorrhizal fungus (AMF), and rhizobia, have been found to increase plant biomass production by synthesizing hormones, fixing nitrogen, and solubilizing phosphate and potassium. Numerous studies have contributed to unraveling the complex process of plant-microbe interactions in recent decades. In light of the increasing global challenges such as population growth, climate change, and resource scarcity, it has become imperative to explore the potential of plant-bacteria-fungi crosstalk in promoting sustainability. This review aims to bridge existing knowledge gaps, providing a roadmap for future research in this dynamic field by synthesizing current knowledge and identifying emerging trends.


Subject(s)
Bacteria , Fungi , Mycorrhizae , Plant Immunity , Plants , Plants/microbiology , Mycorrhizae/physiology , Fungi/physiology , Fungi/metabolism , Bacteria/metabolism , Bacteria/genetics , Symbiosis , Plant Development , Soil Microbiology , Plant Roots/microbiology , Rhizobium/physiology , Rhizobium/metabolism , Plant Growth Regulators/metabolism
10.
Chemosphere ; 360: 142431, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38797209

ABSTRACT

Globally, agricultural productivity is facing a serious problem due to soil salinity which often causes osmotic, ionic, and redox imbalances in plants. Applying halotolerant rhizobacterial inoculants having multifarious growth-regulating traits is thought to be an effective and advantageous approach to overcome salinity stress. Here, salt-tolerant (tolerating 300 mM NaCl), exopolysaccharide (EPS) producing Rhizobium azibense SR-26 (accession no. MG063740) was assessed for salt alleviation potential by inoculating Phaseolus vulgaris (L.) plants raised under varying NaCl regimes. The metabolically active cells of strain SR-26 produced a significant amount of phytohormones (indole-3-acetic acid, gibberellic acid, and cytokinin), ACC deaminase, ammonia, and siderophore under salt stress. Increasing NaCl concentration variably affected the EPS produced by SR-26. The P-solubilization activity of the SR-26 strain was positively impacted by NaCl, as demonstrated by OD shift in NaCl-treated/untreated NBRIP medium. The detrimental effect of NaCl on plants was lowered by inoculation of halotolerant strain SR-26. Following soil inoculation, R. azibense significantly (p ≤ 0.05) enhanced seed germination (10%), root (19%) shoot (23%) biomass, leaf area (18%), total chlorophyll (21%), and carotenoid content (32%) of P. vulgaris raised in soil added with 40 mM NaCl concentration. Furthermore, strain SR-26 modulated the relative leaf water content (RLWC), proline, total soluble protein (TSP), and sugar (TSS) of salt-exposed plants. Moreover, R. azibense inoculation lowered the concentrations of oxidative stress biomarkers; MDA (29%), H2O2 content (24%), electrolyte leakage (31%), membrane stability (36%) and Na+ ion uptake (28%) when applied to 40 mM NaCl-treated plants. Further, R. azibense increases the salt tolerance mechanism of P. vulgaris by upregulating the antioxidant defensive responses. Summarily, it is reasonable to propose that EPS-synthesizing halotolerant R. azibense SR-26 should be applied as the most cost-effective option for increasing the yields of legume crops specifically P. vulgaris in salinity-challenged soil systems.


Subject(s)
Antioxidants , Phaseolus , Plant Growth Regulators , Polysaccharides, Bacterial , Rhizobium , Salt Tolerance , Phaseolus/drug effects , Phaseolus/physiology , Phaseolus/growth & development , Rhizobium/physiology , Polysaccharides, Bacterial/metabolism , Antioxidants/metabolism , Plant Growth Regulators/metabolism , Soil Microbiology , Homeostasis , Salinity , Sodium Chloride/pharmacology , Ions
11.
PLoS One ; 19(5): e0304673, 2024.
Article in English | MEDLINE | ID: mdl-38820398

ABSTRACT

In Tunisia, Orobanche foetida Poir. is considered an important agricultural biotic constraint on faba bean (Vicia faba L.) production. An innovative control method for managing this weed in faba bean is induced resistance through inoculation by rhizobia strains. In this study, we explored the biochemical dynamics in V. faba L. minor inoculated by rhizobia in response to O. foetida parasitism. A systemic induced resistant reaction was evaluated through an assay of peroxidase (POX), polyphenol oxidase (PPO) and phenyl alanine ammonialyase (PAL) activity and phenolic compound and hydrogen peroxide (H2O2) accumulation in faba bean plants infested with O. foetida and inoculated with rhizobia. Two rhizobia strains (Mat, Bj1) and a susceptible variety of cultivar Badi were used in a co-culture Petri dish experiment. We found that Mat inoculation significantly decreased O. foetida germination and the number of tubercles on the faba bean roots by 87% and 88%, respectively. Following Bj1 inoculation, significant decreases were only observed in O. foetida germination (62%). In addition, Mat and Bj1 inoculation induced a delay in tubercle formation (two weeks) and necrosis in the attached tubercles (12.50% and 4.16%, respectively) compared to the infested control. The resistance of V. faba to O. foetida following Mat strain inoculation was mainly associated with a relatively more efficient enzymatic antioxidative response. The antioxidant enzyme activity was enhanced following Mat inoculation of the infected faba bean plant. Indeed, increases of 45%, 67% and 86% were recorded in the POX, PPO and PAL activity, respectively. Improvements of 56% and 12% were also observed in the soluble phenolic and H2O2 contents. Regarding inoculation with the Bj1 strain, significant increases were only observed in soluble phenolic and H2O2 contents and PPO activity (especially at 45 days after inoculation) compared to the infested control. These results imply that inoculation with the rhizobia strains (especially Mat) induced resistance and could bio-protect V. faba against O. foetida parasitism by inducing systemic resistance, although complete protectionwas not achieved by rhizobia inoculation. The Mat strain could be used as a potential candidate for the development of an integrated method for controlling O. foetida parasitism in faba bean.


Subject(s)
Hydrogen Peroxide , Orobanche , Vicia faba , Vicia faba/microbiology , Vicia faba/parasitology , Vicia faba/metabolism , Hydrogen Peroxide/metabolism , Catechol Oxidase/metabolism , Plant Roots/microbiology , Plant Roots/parasitology , Plant Roots/metabolism , Rhizobium/physiology , Peroxidase/metabolism , Plant Diseases/parasitology , Plant Diseases/microbiology , Phenylalanine Ammonia-Lyase/metabolism
13.
Biochem Soc Trans ; 52(3): 1419-1430, 2024 Jun 26.
Article in English | MEDLINE | ID: mdl-38779952

ABSTRACT

Legumes house nitrogen-fixing endosymbiotic rhizobia in specialised polyploid cells within root nodules. This results in a mutualistic relationship whereby the plant host receives fixed nitrogen from the bacteria in exchange for dicarboxylic acids. This plant-microbe interaction requires the regulation of multiple metabolic and physiological processes in both the host and symbiont in order to achieve highly efficient symbiosis. Recent studies have showed that the success of symbiosis is influenced by the circadian clock of the plant host. Medicago and soybean plants with altered clock mechanisms showed compromised nodulation and reduced plant growth. Furthermore, transcriptomic analyses revealed that multiple genes with key roles in recruitment of rhizobia to plant roots, infection and nodule development were under circadian control, suggesting that appropriate timing of expression of these genes may be important for nodulation. There is also evidence for rhythmic gene expression of key nitrogen fixation genes in the rhizobium symbiont, and temporal coordination between nitrogen fixation in the bacterial symbiont and nitrogen assimilation in the plant host may be important for successful symbiosis. Understanding of how circadian regulation impacts on nodule establishment and function will identify key plant-rhizobial connections and regulators that could be targeted to increase the efficiency of this relationship.


Subject(s)
Fabaceae , Gene Expression Regulation, Plant , Nitrogen Fixation , Rhizobium , Symbiosis , Rhizobium/physiology , Rhizobium/metabolism , Fabaceae/microbiology , Fabaceae/metabolism , Circadian Rhythm/physiology , Root Nodules, Plant/microbiology , Root Nodules, Plant/metabolism , Circadian Clocks/physiology , Circadian Clocks/genetics
14.
J Agric Food Chem ; 72(21): 12057-12071, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38753758

ABSTRACT

Plant growth-promoting endophytes (PGPE) can effectively regulate plant growth and metabolism. The regulation is modulated by metabolic signals, and the resulting metabolites can have considerable effects on the plant yield and quality. Here, tissue culture Houttuynia cordata Thunb., was inoculated with Rhizobium sp. (BH46) to determine the effect of BH46 on H. cordata growth and metabolism, and elucidate associated regulatory mechanisms. The results revealed that BH46 metabolized indole-3-acetic acid and induced 1-aminocyclopropane-1-carboxylate deaminase to decrease ethylene metabolism. Host peroxidase synthesis MPK3/MPK6 genes were significantly downregulated, whereas eight genes associated with auxins, cytokinins, abscisic acid, jasmonic acid, and antioxidant enzymes were significantly upregulated. Eight genes associated with flavonoid biosynthesis were significantly upregulated, with the CPY75B1 gene regulating the production of rutin and quercitrin and the HCT gene directly regulating the production of chlorogenic acid. Therefore, BH46 influences metabolic signals in H. cordata to modulate its growth and metabolism, in turn, enhancing yield and quality of H. cordata.


Subject(s)
Endophytes , Houttuynia , Plant Proteins , Houttuynia/microbiology , Houttuynia/metabolism , Houttuynia/genetics , Endophytes/metabolism , Endophytes/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Gene Expression Regulation, Plant , Plant Growth Regulators/metabolism , Plant Growth Regulators/pharmacology , Indoleacetic Acids/metabolism , Rhizobium/genetics , Rhizobium/metabolism , Flavonoids/metabolism , Abscisic Acid/metabolism , Ethylenes/metabolism , Carbon-Carbon Lyases/metabolism , Carbon-Carbon Lyases/genetics
15.
Physiol Plant ; 176(3): e14341, 2024.
Article in English | MEDLINE | ID: mdl-38741264

ABSTRACT

Symbiotic nitrogen fixation (SNF) is crucial for legumes, providing them with the nitrogen necessary for plant growth and development. Nodulation is the first step in the establishment of SNF. However, the determinant genes in soybean nodulation and the understanding of the underlying molecular mechanisms governing nodulation are still limited. Herein, we identified a phosphatase, GmPP2C61A, which was specifically induced by rhizobia inoculation. Using transgenic hairy roots harboring GmPP2C61A::GUS, we showed that GmPP2C61A was mainly induced in epidermal cells following rhizobia inoculation. Functional analysis revealed that knockdown or knock-out of GmPP2C61A significantly reduced the number of nodules, while overexpression of GmPP2C61A promoted nodule formation. Additionally, GmPP2C61A protein was mainly localized in the cytoplasm and exhibited conserved phosphatase activity in vitro. Our findings suggest that phosphatase GmPP2C61A serves as a critical regulator in soybean nodulation, highlighting its potential significance in enhancing symbiotic nitrogen fixation.


Subject(s)
Gene Expression Regulation, Plant , Glycine max , Plant Proteins , Plant Root Nodulation , Glycine max/genetics , Glycine max/microbiology , Glycine max/physiology , Nitrogen Fixation , Phosphoric Monoester Hydrolases/metabolism , Phosphoric Monoester Hydrolases/genetics , Plant Proteins/metabolism , Plant Proteins/genetics , Plant Root Nodulation/genetics , Plant Roots/genetics , Plant Roots/microbiology , Plant Roots/metabolism , Plants, Genetically Modified , Rhizobium/physiology , Root Nodules, Plant/genetics , Root Nodules, Plant/microbiology , Root Nodules, Plant/metabolism , Symbiosis/genetics
16.
Article in English | MEDLINE | ID: mdl-38743471

ABSTRACT

Rhizobia are bacteria that form nitrogen-fixing nodules in legume plants. The sets of genes responsible for both nodulation and nitrogen fixation are carried in plasmids or genomic islands that are often mobile. Different strains within a species sometimes have different host specificities, while very similar symbiosis genes may be found in strains of different species. These specificity variants are known as symbiovars, and many of them have been given names, but there are no established guidelines for defining or naming them. Here, we discuss the requirements for guidelines to describe symbiovars, propose a set of guidelines, provide a list of all symbiovars for which descriptions have been published so far, and offer a mechanism to maintain a list in the future.


Subject(s)
Rhizobium , Symbiosis , Fabaceae/microbiology , Guidelines as Topic , Nitrogen Fixation , Rhizobium/genetics , Rhizobium/classification , Root Nodules, Plant/microbiology
17.
Nature ; 630(8018): 899-904, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38723661

ABSTRACT

Nitrogen (N2) fixation in oligotrophic surface waters is the main source of new nitrogen to the ocean1 and has a key role in fuelling the biological carbon pump2. Oceanic N2 fixation has been attributed almost exclusively to cyanobacteria, even though genes encoding nitrogenase, the enzyme that fixes N2 into ammonia, are widespread among marine bacteria and archaea3-5. Little is known about these non-cyanobacterial N2 fixers, and direct proof that they can fix nitrogen in the ocean has so far been lacking. Here we report the discovery of a non-cyanobacterial N2-fixing symbiont, 'Candidatus Tectiglobus diatomicola', which provides its diatom host with fixed nitrogen in return for photosynthetic carbon. The N2-fixing symbiont belongs to the order Rhizobiales and its association with a unicellular diatom expands the known hosts for this order beyond the well-known N2-fixing rhizobia-legume symbioses on land6. Our results show that the rhizobia-diatom symbioses can contribute as much fixed nitrogen as can cyanobacterial N2 fixers in the tropical North Atlantic, and that they might be responsible for N2 fixation in the vast regions of the ocean in which cyanobacteria are too rare to account for the measured rates.


Subject(s)
Diatoms , Nitrogen Fixation , Nitrogen , Oceans and Seas , Rhizobium , Seawater , Symbiosis , Carbon/metabolism , Diatoms/metabolism , Diatoms/physiology , Nitrogen/metabolism , Photosynthesis , Phylogeny , Rhizobium/classification , Rhizobium/metabolism , Rhizobium/physiology , Seawater/microbiology , Seawater/chemistry , Cyanobacteria/isolation & purification , Cyanobacteria/metabolism , Atlantic Ocean
18.
Arch Microbiol ; 206(6): 281, 2024 May 28.
Article in English | MEDLINE | ID: mdl-38805057

ABSTRACT

As a legume crop widely cultured in the world, faba bean (Vicia faba L.) forms root nodules with diverse Rhizobium species in different regions. However, the symbionts associated with this plant in Mexico have not been studied. To investigate the diversity and species/symbiovar affiliations of rhizobia associated with faba bean in Mexico, rhizobia were isolated from this plant grown in two Mexican sites in the present study. Based upon the analysis of recA gene phylogeny, two genotypes were distinguished among a total of 35 isolates, and they were identified as Rhizobium hidalgonense and Rhizobium redzepovicii, respectively, by the whole genomic sequence analysis. Both the species harbored identical nod gene cluster and the same phylogenetic positions of nodC and nifH. So, all of them were identified into the symbiovar viciae. As a minor group, R. hidalgonense was only isolated from slightly acid soil and R. redzepovicii was the dominant group in both the acid and neutral soils. In addition, several genes related to resistance to metals (zinc, copper etc.) and metalloids (arsenic) were detected in genomes of the reference isolates, which might offer them some adaptation benefits. As conclusion, the community composition of faba bean rhizobia in Mexico was different from those reported in other regions. Furthermore, our study identified sv. viciae as the second symbiovar in the species R. redzepovicii. These results added novel evidence about the co-evolution, diversification and biogeographic patterns of rhizobia in association with their host legumes in distinct geographic regions.


Subject(s)
Phylogeny , Rhizobium , Soil Microbiology , Symbiosis , Vicia faba , Vicia faba/microbiology , Rhizobium/genetics , Rhizobium/isolation & purification , Rhizobium/classification , Mexico , Bacterial Proteins/genetics , Root Nodules, Plant/microbiology , Soil/chemistry , N-Acetylglucosaminyltransferases/genetics , Oxidoreductases/genetics , Rec A Recombinases/genetics , Multigene Family
19.
Sci Rep ; 14(1): 10848, 2024 05 13.
Article in English | MEDLINE | ID: mdl-38740945

ABSTRACT

Bacterial cellulose (BC) is a natural polymer renowned for its unique physicochemical and mechanical attributes, including notable water-holding capacity, crystallinity, and a pristine fiber network structure. While BC has broad applications spanning agriculture, industry, and medicine, its industrial utilization is hindered by production costs and yield limitations. In this study, Rhizobium sp. was isolated from bean roots and systematically assessed for BC synthesis under optimal conditions, with a comparative analysis against BC produced by Komagataeibacter hansenii. The study revealed that Rhizobium sp. exhibited optimal BC synthesis when supplied with a 1.5% glucose carbon source and a 0.15% yeast extract nitrogen source. Under static conditions at 30 °C and pH 6.5, the most favorable conditions for growth and BC production (2.5 g/L) were identified. Modifications were introduced using nisin to enhance BC properties, and the resulting BC-nisin composites were comprehensively characterized through various techniques, including FE-SEM, FTIR, porosity, swelling, filtration, and antibacterial activity assessments. The results demonstrated that BC produced by Rhizobium sp. displayed properties comparable to K. hansenii-produced BC. Furthermore, the BC-nisin composites exhibited remarkable inhibitory activity against Escherichia coli and Pseudomonas aeruginosa. This study contributes valuable insights into BC's production, modification, and characterization utilizing Rhizobium sp., highlighting the exceptional properties that render it efficacious across diverse applications.


Subject(s)
Cellulose , Plant Roots , Rhizobium , Cellulose/biosynthesis , Cellulose/metabolism , Plant Roots/microbiology , Rhizobium/metabolism , Acetobacteraceae/metabolism , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/biosynthesis
20.
Environ Microbiol Rep ; 16(3): e13254, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38725134

ABSTRACT

Arid and semi-arid areas are facing increasingly severe water deficits that are being intensified by global climate changes. Microbes associated with plants native to arid regions provide valuable benefits to plants, especially in water-stressed environments. In this study, we used 16S rDNA metabarcoding analysis to examine the bacterial communities in the bulk soil, rhizosphere and root endosphere of the plant Malva sylvestris L. in Morocco, along a gradient of precipitation. We found that the rhizosphere of M. sylvestris did not show significant differences in beta-diversity compared to bulk soil, although, it did display an increased degree of alpha-diversity. The endosphere was largely dominated by the genus Rhizobium and displayed remarkable variation between plants, which could not be attributed to any of the variables observed in this study. Overall, the effects of precipitation level were relatively weak, which may be related to the intense drought in Morocco at the time of sampling. The dominance of Rhizobium in a non-leguminous plant is particularly noteworthy and may permit the utilization of this bacterial taxon to augment drought tolerance; additionally, the absence of any notable selection of the rhizosphere of M. sylvestris suggests that it is not significatively affecting its soil environment.


Subject(s)
Bacteria , Droughts , RNA, Ribosomal, 16S , Rhizosphere , Soil Microbiology , Morocco , Bacteria/classification , Bacteria/genetics , Bacteria/isolation & purification , RNA, Ribosomal, 16S/genetics , Plant Roots/microbiology , Biodiversity , Microbiota , DNA, Bacterial/genetics , Rhizobium/classification , Rhizobium/genetics , Rhizobium/isolation & purification , Rhizobium/physiology , Phylogeny
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