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1.
Viruses ; 14(2)2022 02 06.
Article in English | MEDLINE | ID: mdl-35215923

ABSTRACT

Botryosphaeria dothidea is, globally, one of the most economically important phytopathogenic fungi worldwide, causing the canker and dieback of fruit trees. An increasing number of viruses infecting B. dothidea have lately been reported, several of which could confer hypovirulence. In this study, isolated from strain ZM170285-1 of B. dothidea, a novel double-stranded RNA (dsRNA) mycovirus, tentatively named Botryosphaeria dothidea partitivirus 2 (BdPV2), was identified well. The BdPV2 harbored three dsRNA segments (1-3) with lengths of 1751, 1568, and 1198 bp, which encoded an RNA-dependent RNA polymerase (RdRp), a capsid protein (CP), and a hypothetical protein of unknown function, respectively. BLASTp searches revealed that the predicted protein sequences of dsRNA1 and dsRNA2 had the highest identities (74.95% and 61.01%) with the corresponding dsRNAs of Penicillium stoloniferum virus S (PsV-S), whereas dsRNA3 shared the highest identity (32.95%) with the dsRNA3 of Aspergillus ochraceous virus 1 (AoV1). Phylogenetic analysis indicated that BdPV2 belonged to the Gammapartitivirus genus and Partitiviridae family. To our knowledge, this is the first report of a Gammapartitivirus in B. dothidea.


Subject(s)
Ascomycota/virology , Fungal Viruses/genetics , Plant Diseases/microbiology , Double Stranded RNA Viruses/classification , Double Stranded RNA Viruses/genetics , Double Stranded RNA Viruses/growth & development , Double Stranded RNA Viruses/pathogenicity , Fungal Viruses/classification , Fungal Viruses/growth & development , Fungal Viruses/pathogenicity , Genome, Viral/genetics , Phylogeny , RNA, Viral/genetics , Species Specificity , Spores, Fungal/virology , Viral Proteins/genetics
2.
Arch Virol ; 166(10): 2711-2722, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34313859

ABSTRACT

A unique capsidless virus with a positive-sense, single-stranded RNA genome (hadakavirus 1, HadV1), a member of the extended picorna-like supergroup, was isolated previously from the phytopathogenic fungus Fusarium oxysporum. Here, we describe the molecular and biological characterisation of a second hadakavirus strain from Fusarium nygamai, which has not been investigated in detail previously as a virus host. This virus, hadakavirus 1 strain 1NL (HadV1-1NL), has features similar to the first hadakavirus, HadV1-7n, despite having a different number of segments (10 for HadV1-1NL vs. 11 for HadV1-7n). The 10 genomic RNA segments of HadV1-1NL range in size from 0.9 kb to 2.5 kb. All HadV1-1NL segments show 67% to 86% local nucleotide sequence identity to their HadV1-7n counterparts, whereas HadV1-1NL has no homolog of HadV1-7n RNA8, which encodes a zinc-finger motif. Another interesting feature is the possible coding incapability of HadV1-1NL RNA10. HadV1-1NL was predicted to be capsidless based on the RNase A susceptibility of its replicative form dsRNA. Phenotypic comparison of multiple virus-infected and virus-free single-spore isolates indicated asymptomatic infection by HadV1-1NL. Less-efficient vertical transmission via spores was observed as the infected fungal colonies from which the spores were derived became older, as was observed for HadV1-7n. This study shows a second example of a hadakavirus that appears to have unusual features.


Subject(s)
Fusarium/virology , Genome, Viral/genetics , Positive-Strand RNA Viruses/genetics , Fungal Viruses/classification , Fungal Viruses/genetics , Fungal Viruses/isolation & purification , Phylogeny , Plant Diseases/microbiology , Positive-Strand RNA Viruses/classification , Positive-Strand RNA Viruses/isolation & purification , RNA, Double-Stranded/metabolism , RNA, Viral/genetics , Ribonucleases/metabolism , Sequence Analysis, DNA , Species Specificity , Spores, Fungal/virology , Viral Proteins/genetics
3.
Arch Microbiol ; 203(1): 241-249, 2021 Jan.
Article in English | MEDLINE | ID: mdl-32914229

ABSTRACT

The genus Colletotrichum comprises a large number of filamentous fungi responsible for anthracnose diseases in many tropical and subtropical fruits and vegetables. In particular, Colletotrichum higginsianum infects Brassicaceae species, including Arabidopsis. The C. higginsianum strain IMI349063A is naturally infected with a dsRNA virus, named Colletorichum higginsianum non-segmented virus (ChNRV1). Here, we investigated the biological effect of ChNRV1 in C. higginsianum by comparing strains with and without the virus. ChNRV1 does not have an effect on C. higginsianum growth under salt and cell-wall stress conditions. However, thermal stress reduced C. higginsianum growth rate, this effect being more evident in the wild-type C. higginsianum strain containing the virus. Although ChNRV1 had no effect in conidiation, conidia were narrower when the virus is present. More importantly, ChNRV1 causes a mild increase in C. higginsianum virulence (hypervirulence) when infecting Arabidopsis plants. These findings indicated that, whereas the ChNRV1 mycovirus does not impair growth and conidiation of C. higginsianum, it confers hypervirulence to the fungal host. These findings will help in future research on the effect of mycoviral infection on pathogenic fungi in plant species of agronomical relevance.


Subject(s)
Arabidopsis/microbiology , Colletotrichum/pathogenicity , Colletotrichum/virology , Fungal Viruses/physiology , Plant Diseases/microbiology , Plant Diseases/virology , Spores, Fungal/virology , Virulence/genetics
4.
Viruses ; 12(10)2020 10 14.
Article in English | MEDLINE | ID: mdl-33066620

ABSTRACT

Mycoviruses appear to be widespread in Fusarium species worldwide. The aim of this work was to identify mycoviral infections in Fusarium spp., isolated from maize and sorghum grown in Argentina, and to estimate their potential effects on the pathogenicity and toxigenesis of the host fungus towards maize. Mycoviruses were identified in 2 out of 105 isolates analyzed; Fusarium verticillioides strain Sec505 and Fusarium andiyazi strain 162. They were characterized as members of the genus Mitovirus by high-throughput sequencing and sequence analysis. The F. verticillioides mitovirus was a novel mycovirus whereas the F. andiyazi mitovirus was found to be a new strain of a previously identified mitovirus. We have named these mitoviruses, Fusarium verticillioides mitovirus 1 (FvMV1) and Fusarium andiyazi mitovirus 1 strain 162 (FaMV1-162). To our knowledge, FvMV1 is the first mycovirus reported as naturally infecting F. verticillioides, the major causal agent of ear rot and fumonisin producer in corn. Both mitoviruses exhibited 100% vertical transmission rate to microconidia. The Fa162 strain infected with FaMV1-162 did not show phenotypic alterations. In contract, F. verticillioides Sec505 infected with FvMV1 showed increased virulence as well as microconidia and fumonisin-B1 production, compared with two uninfected strains. These results suggest that FvMV1 could have a role in modulating F. verticillioides pathogenicity and toxin production worth further exploring.


Subject(s)
Fungal Viruses/classification , Fusarium/pathogenicity , Fusarium/virology , Sorghum/microbiology , Zea mays/microbiology , Argentina , Fungal Viruses/isolation & purification , High-Throughput Nucleotide Sequencing , Phylogeny , Plant Diseases/microbiology , Spores, Fungal/virology
5.
Virus Res ; 271: 197674, 2019 10 02.
Article in English | MEDLINE | ID: mdl-31348964

ABSTRACT

Phytophthora infestans is the causal agent of potato and tomato late blight. This pathogen, which caused the Irish potato famine, is of profound historical significance and still poses a major threat in today's agroecosystems. Research on late blight epidemics usually focuses on pathogen virulence, host resistance, environmental factors and fungicide resistance. In this study, we examined the effect of PiRV-2, an RNA virus harbored by some P. infestans isolates, on its host. Comparing isogenic isolates with or without the virus demonstrated that the virus stimulated sporangia production in P. infestans. Transcriptome analysis suggested that it achieved sporulation stimulation likely through down-regulation of ammonium and amino acid intake in P. infestans. Survey of a limited P. infestans collection found PiRV-2 presence in most strains in the US-8 lineage, a very successful clonal lineage of P. infestans in North America. We suggest that PiRV-2 may affect the ecological fitness of P. infestans and thus could contribute to late blight epidemiology.


Subject(s)
Phytophthora infestans/virology , RNA Viruses/physiology , Spores, Fungal/virology , Phenotype , Plant Diseases/virology
6.
Viruses ; 10(10)2018 10 02.
Article in English | MEDLINE | ID: mdl-30279352

ABSTRACT

This study determined the effects of Aspergillus thermomutatus chrysovirus 1 (AthCV1), isolated from Aspergillus thermomutatus, on A. fumigatus, A. nidulans and A. niger. Protoplasts of virus-free isolates of A. fumigatus, A. nidulans and A. niger were transfected with purified AthCV1 particles and the phenotype, growth and sporulation of the isogenic AthCV1-free and AthCV1-infected lines assessed at 20 °C and 37 °C and gene expression data collected at 37 °C. AthCV1-free and AthCV1-infected A. fumigatus produced only conidia at both temperatures but more than ten-fold reduced compared to the AthCV1-infected line. Conidiation was also significantly reduced in infected lines of A. nidulans and A. niger at 37 °C. AthCV1-infected lines of A. thermomutatus and A. nidulans produced large numbers of ascospores at both temperatures, whereas the AthCV1-free line of the former did not produce ascospores. AthCV1-infected lines of all species developed sectoring phenotypes with sclerotia produced in aconidial sectors of A. niger at 37 °C. AthCV1 was detected in 18% of sclerotia produced by AthCV1-infected A. niger and 31% of ascospores from AthCV1-infected A. nidulans. Transcriptome analysis of the naturally AthCV1-infected A. thermomutatus and the three AthCV1-transfected Aspergillus species showed altered gene expression as a result of AthCV1-infection. The results demonstrate that AthCV1 can infect a range of Aspergillus species resulting in reduced sporulation, a potentially useful attribute for a biological control agent.


Subject(s)
Aspergillus/virology , Fungal Viruses/physiology , RNA Viruses/physiology , Aspergillus/genetics , Aspergillus/growth & development , Biological Control Agents , Gene Expression Profiling , Gene Expression Regulation, Fungal , Phenotype , RNA Viruses/isolation & purification , Spores, Fungal/genetics , Spores, Fungal/growth & development , Spores, Fungal/virology , Temperature
7.
J Gen Virol ; 99(1): 19-20, 2018 01.
Article in English | MEDLINE | ID: mdl-29251589

ABSTRACT

The Chrysoviridae is a family of small, isometric, non-enveloped viruses (40 nm in diameter) with segmented dsRNA genomes (typically four segments). The genome segments are individually encapsidated and together comprise 11.5-12.8 kbp. The single genus Chrysovirus includes nine species. Chrysoviruses lack an extracellular phase to their life cycle; they are transmitted via intracellular routes within an individual during hyphal growth, in asexual or sexual spores, or between individuals via hyphal anastomosis. There are no known natural vectors for chrysoviruses. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the Chrysoviridae, which is available at www.ictv.global/report/chrysoviridae.


Subject(s)
Genome, Viral , Phylogeny , RNA Viruses/genetics , RNA, Double-Stranded/genetics , RNA, Viral/genetics , Virion/genetics , Ascomycota/virology , Basidiomycota/virology , Hyphae/virology , RNA Viruses/classification , RNA Viruses/ultrastructure , Spores, Fungal/virology , Terminology as Topic , Virion/ultrastructure , Virus Replication
8.
J Virol ; 91(19)2017 10 01.
Article in English | MEDLINE | ID: mdl-28724762

ABSTRACT

Cucumber necrosis virus (CNV) is a member of the genus Tombusvirus and has a monopartite positive-sense RNA genome. CNV is transmitted in nature via zoospores of the fungus Olpidium bornovanus As with other members of the Tombusvirus genus, the CNV capsid swells when exposed to alkaline pH and EDTA. We previously demonstrated that a P73G mutation blocks the virus from zoospore transmission while not significantly affecting replication in plants (K. Kakani, R. Reade, and D. Rochon, J Mol Biol 338:507-517, 2004, https://doi.org/10.1016/j.jmb.2004.03.008). P73 lies immediately adjacent to a putative zinc binding site (M. Li et al., J Virol 87:12166-12175, 2013, https://doi.org/10.1128/JVI.01965-13) that is formed by three icosahedrally related His residues in the N termini of the C subunit at the quasi-6-fold axes. To better understand how this buried residue might affect vector transmission, we determined the cryo-electron microscopy structure of wild-type CNV in the native and swollen state and of the transmission-defective mutant, P73G, under native conditions. With the wild-type CNV, the swollen structure demonstrated the expected expansion of the capsid. However, the zinc binding region at the quasi-6-fold at the ß-annulus axes remained intact. By comparison, the zinc binding region of the P73G mutant, even under native conditions, was markedly disordered, suggesting that the ß-annulus had been disrupted and that this could destabilize the capsid. This was confirmed with pH and urea denaturation experiments in conjunction with electron microscopy analysis. We suggest that the P73G mutation affects the zinc binding and/or the ß-annulus, making it more fragile under neutral/basic pH conditions. This, in turn, may affect zoospore transmission.IMPORTANCECucumber necrosis virus (CNV), a member of the genus Tombusvirus, is transmitted in nature via zoospores of the fungus Olpidium bornovanus While a number of plant viruses are transmitted via insect vectors, little is known at the molecular level as to how the viruses are recognized and transmitted. As with many spherical plant viruses, the CNV capsid swells when exposed to alkaline pH and EDTA. We previously demonstrated that a P73G mutation that lies inside the capsid immediately adjacent to a putative zinc binding site (Li et al., J Virol 87:12166-12175, 2013, https://doi.org/10.1128/JVI.01965-13) blocks the virus from zoospore transmission while not significantly affecting replication in plants (K. Kakani, R. Reade, and D. Rochon, J Mol Biol 338:507-517, 2004, https://doi.org/10.1016/j.jmb.2004.03.008). Here, we show that the P73G mutant is less stable than the wild type, and this appears to be correlated with destabilization of the ß-annulus at the icosahedral 3-fold axes. Therefore, the ß-annulus appears not to be essential for particle assembly but is necessary for interactions with the transmission vector.


Subject(s)
Capsid Proteins/ultrastructure , Nicotiana/virology , Spores, Fungal/virology , Tombusvirus/genetics , Tombusvirus/ultrastructure , Virus Replication/genetics , Amino Acid Sequence , Capsid Proteins/genetics , Chytridiomycota/virology , Cryoelectron Microscopy , Plant Diseases/virology , Tombusvirus/pathogenicity
9.
Virus Res ; 233: 95-104, 2017 04 02.
Article in English | MEDLINE | ID: mdl-28267607

ABSTRACT

A previously reported Expressed Sequence Tag (EST) library from spores of microsporidian Antonospora locustae includes a number of clones with sequence similarities to plant amalgaviruses. Reexamining the sequence accessions from that library, we found additional such clones, contributing to a 3247-nt contig that approximates the length of an amalga-like virus genome. Using A. locustae spores stored from that previous study, and new ones obtained from the same source, we newly visualized the putative dsRNA genome of this virus and obtained amplicons yielding a 3387-nt complete genome sequence. Phylogenetic analyses suggested it as prototype strain of a new genus in family Amalgaviridae. The genome contains two partially overlapping long ORFs, with downstream ORF2 in the +1 frame relative to ORF1 and a proposed motif for +1 ribosomal frameshifting in the region of overlap. Subsequent database searches using the predicted fusion protein sequence of this new amalga-like virus identified related sequences in the transcriptome of a basal hexapod, the springtail species Tetrodontophora bielanensis. We speculate that this second new amalga-like virus (contig length, 3475 nt) likely also derived from a microsporidian, or related organism, which was associated with the springtail specimens at the time of sampling for transcriptome analysis. Other findings of interest include evidence that the ORF1 translation products of these two new amalga-like viruses contain a central region of predicted α-helical coiled coil, as recently reported for plant amalgaviruses, and transcriptome-based evidence for another new amalga-like virus in the transcriptome of another basal hexapod, the two-pronged bristletail species Campodea augens.


Subject(s)
Fungal Viruses/genetics , Grasshoppers/microbiology , Microsporidia/virology , Phylogeny , RNA Viruses/genetics , RNA, Double-Stranded/genetics , RNA, Viral/genetics , Amino Acid Sequence , Animals , Arthropods/microbiology , Base Sequence , Expressed Sequence Tags , Fungal Viruses/classification , Fungal Viruses/metabolism , Gene Library , Nucleic Acid Conformation , Open Reading Frames , RNA Viruses/classification , RNA Viruses/metabolism , RNA, Double-Stranded/metabolism , RNA, Viral/metabolism , Sequence Alignment , Sequence Homology, Amino Acid , Spores, Fungal/virology , Transcriptome
10.
Methods Mol Biol ; 1236: 171-80, 2015.
Article in English | MEDLINE | ID: mdl-25287503

ABSTRACT

Fungal viruses (mycoviruses) often have a significant impact not only on phenotypic expression of the host fungus but also on higher order biological interactions, e.g., conferring plant stress tolerance via an endophytic host fungus. Arbuscular mycorrhizal (AM) fungi in the phylum Glomeromycota associate with most land plants and supply mineral nutrients to the host plants. So far, little information about mycoviruses has been obtained in the fungi due to their obligate biotrophic nature. Here we provide a technical breakthrough, "two-step strategy" in combination with deep-sequencing, for virological study in AM fungi; dsRNA is first extracted and sequenced using material obtained from highly productive open pot culture, and then the presence of viruses is verified using pure material produced in the in vitro monoxenic culture. This approach enabled us to demonstrate the presence of several viruses for the first time from a glomeromycotan fungus.


Subject(s)
High-Throughput Nucleotide Sequencing/methods , Mycorrhizae/virology , Viruses, Unclassified/genetics , Viruses, Unclassified/isolation & purification , Mycorrhizae/growth & development , Phylogeny , RNA, Double-Stranded/isolation & purification , Spores, Fungal/virology
11.
J Gen Virol ; 93(Pt 11): 2502-2511, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22855784

ABSTRACT

Botrytis cinerea is infected by many mycoviruses with varying phenotypical effects on the fungal host, including Botrytis virus X (BVX), a mycovirus that has been found in several B. cinerea isolates worldwide with no obvious effects on growth. Here we present results from serological and immunofluorescence microscopy (IFM) studies using antiserum raised against the coat protein of BVX expressed in Escherichia coli fused to maltose-binding protein. Due to the high yield of recombinant protein it was possible to raise antibodies that recognized BVX particles. An indirect ELISA, using BVX antibodies, detected BVX in partially purified virus preparations from fungal isolates containing BVX alone and in mixed infection with Botrytis virus F. The BVX antiserum also proved suitable for IFM studies. Intensely fluorescing spots (presumed to be virus aggregates) were found to be localized in hyphal cell compartments and spores of natural and experimentally infected B. cinerea isolates using IFM. Immunofluorescently labelled sections through fungal tissue, as well as fixed mycelia grown on glass slides, showed aggregations of virions closely associated with fungal cell membranes and walls, next to septal pores, and in hyphal tips. Also, calcofluor white staining of mature cell walls of virus-transfected Botrytis clones revealed numerous cell wall areas with increased amounts of chitin/glycoproteins. Our results indicate that some BVX aggregates are closely associated with the fungal cell wall and raise the question of whether mycoviruses may be able to move through the wall and therefore not be totally dependent on intracellular routes of transmission.


Subject(s)
Botrytis/virology , Fluorescent Antibody Technique/methods , RNA Viruses/genetics , RNA Viruses/isolation & purification , Antibodies, Viral , Antibody Specificity , Cloning, Molecular , Enzyme-Linked Immunosorbent Assay , Gene Expression Regulation, Viral/physiology , Hyphae/virology , Microscopy, Fluorescence/methods , RNA, Viral/genetics , Spores, Fungal/virology
12.
Virus Res ; 160(1-2): 409-13, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21736906

ABSTRACT

A mixed virus infection in a strain of the endophytic and entomopathogenic fungus Tolypocladium cylindrosporum was deduced from a study of the transmission to conidia of several double-stranded RNA (dsRNA) elements. The transmission rates of each dsRNA were different, and monosporic isolates harbouring different combinations of the original set of six dsRNAs were obtained. A 5196 bp dsRNA element was sequenced and represents the genome of T. cylindrosporum virus 1 (TcV1), a new member of the genus Victorivirus in the Totiviridae family. This virus was transmitted to 81.4% of the conidia; in contrast, four dsRNAs of 3.1-3.7 kbp were transmitted only to 4.7% of the monosporic isolates obtained from the infected parental strain. These four dsRNAs did not show segregation during transmission, and one of them was shown by sequence analysis to encode an RdRp, suggesting that the four molecules might represent the whole genome of a quadripartite chrysovirus. A third possible virus with a genome of approximately 4.2 kbp was transmitted to 79.1% of the monosporic isolates produced by the infected strain. Ribavirin was used to cure T. cylindrosporum from viruses, and TcV1 was sensitive to this drug. All monosporic cultures derived from the infected strain treated with 80 and 100 µM concentrations of the drug were free of TcV1.


Subject(s)
Hypocreales/virology , Totiviridae/classification , Totiviridae/isolation & purification , Antiviral Agents/pharmacology , Molecular Sequence Data , RNA, Double-Stranded/genetics , RNA, Viral/genetics , Ribavirin/pharmacology , Sequence Analysis, DNA , Spores, Fungal/virology , Totiviridae/genetics
13.
J Gen Virol ; 92(Pt 9): 2209-2213, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21593272

ABSTRACT

Transmission of Olive mild mosaic virus (OMMV) is facilitated by Olpidium brassicae (Wor.) Dang. An OMMV mutant (OMMVL11) containing two changes in the coat protein (CP), asparagine to tyrosine at position 189 and alanine to threonine at position 216, has been shown not to be Olpidium brassicae-transmissible owing to inefficient attachment of virions to zoospores. In this study, these amino acid changes were separately introduced into the OMMV genome through site-directed mutagenesis, and the asparagine-to-tyrosine change was shown to be largely responsible for the loss of transmission. Analysis of the structure of OMMV CP by comparative modelling approaches showed that this change is located in the interior of the virus particle and the alanine-to-threonine change is exposed on the surface. The asparagine-to-tyrosine change may indirectly affect attachment via changes in the conformation of viral CP subunits, altering the receptor binding site and thus preventing binding to the fungal zoospore.


Subject(s)
Amino Acids/genetics , Capsid Proteins/genetics , Fungi/virology , Tombusviridae/pathogenicity , Virus Attachment , Amino Acid Substitution/genetics , Amino Acids/metabolism , Capsid Proteins/metabolism , Models, Molecular , Mutant Proteins/genetics , Mutant Proteins/metabolism , Mutation, Missense , Plant Diseases/virology , Spores, Fungal/virology
14.
Bing Du Xue Bao ; 26(3): 249-54, 2010 May.
Article in Chinese | MEDLINE | ID: mdl-20572349

ABSTRACT

Four dsRNA bands were extracted from Pleurotus ostreatus TD300 by the dsRNA isolation technique with sizes of 8.2 kb, 2.5 kb, 2.1 kb, and 1.1 kb, respectively. Four virus-eliminated methods, i. e. hyphal tips cut (HTC), protoplast regeneration (PR), single spore hybridization (SSH), and frozen and lyophilized (FL), were applied to prepare virus-eliminated strains, and one virus-eliminated strain was selected for each virus-elimination method. The virus-eliminated strains were named as HTC8, PR15, FL01, and SSH11, respectively. There were low concentration of 8.2 kb dsRNA remained in HTC8, as well as low concentration of 8.2 kb and 2.5 kb dsRNA remained in FL01. However, no dsRNA remained in PR15 and SSH11. The hyphal growth rate and laccase activity of the virus-eliminated strains increased, especially HTC8 and PR15, whose hyphal growth rate was higher by 22.73% and 18.18%, and laccase activities higher by 145.83% and 134.38% than that of the original strain, respectively. The conclusion is that hyphal tips cut and protoplast regeneration are suitable to prepare virus-eliminated strains of edible fungi.


Subject(s)
Food Microbiology , Pleurotus/virology , Viruses/isolation & purification , Freeze Drying , Hybridization, Genetic , Hyphae/virology , Pleurotus/cytology , Pleurotus/genetics , Pleurotus/growth & development , Protoplasts/virology , RNA, Double-Stranded/analysis , RNA, Double-Stranded/isolation & purification , RNA, Fungal/analysis , RNA, Fungal/isolation & purification , Spores, Fungal/genetics , Spores, Fungal/virology
15.
Virology ; 402(1): 129-34, 2010 Jun 20.
Article in English | MEDLINE | ID: mdl-20381824

ABSTRACT

The Chi and W strains of Melon necrotic spot virus (MNSV) are efficiently transmitted by isolates Y1 and NW1, respectively, of the fungal vector Olpidium bornovanus. Analysis of chimeric viruses constructed by switching the coat protein (CP) gene between the two strains unveiled the involvement of the CP in the attachment of MNSV to zoospores of a compatible isolate of O. bornovanus and in the fungal transmission of the virus. Furthermore, analysis of the chimeric virus based on the Chi strain with the protruding domain of the CP from strain W suggested the involvement of the domain in compatibility with zoospore. Comparison of the three-dimensional structures between the CP of the two MNSV strains showed that many of the differences in these amino acid residues are present on the surface of the virus particles, suggesting that these affects the recognition of fungal vectors by the virus.


Subject(s)
Capsid Proteins/physiology , Carmovirus/physiology , Chytridiomycota/virology , Cucurbitaceae/virology , Capsid Proteins/chemistry , Capsid Proteins/genetics , Carmovirus/genetics , Chimera , Models, Molecular , Protein Structure, Tertiary , Recombination, Genetic , Spores, Fungal/virology , Virus Attachment
16.
Curr Protoc Microbiol ; Chapter 16: Unit16B.4, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19235147

ABSTRACT

Fungal zoospores of Olpidium species transmit several viruses in the family Tombusviridae as well as in the Ophio- and Varicosavirus genera. This unit describes procedures for virus transmission by Olpidium sp. The method is useful for assessing fungal transmissibility of a given virus as well as for further studies on molecular and biological aspects of virus/vector interaction.


Subject(s)
Chytridiomycota/virology , Microbiological Techniques , Plant Diseases/virology , Plant Viruses/physiology , RNA Viruses/physiology , Spores, Fungal/virology , Chytridiomycota/growth & development , Chytridiomycota/isolation & purification , Chytridiomycota/physiology , Cucumis sativus/microbiology , Culture Media , Lactuca/microbiology , Plant Roots/microbiology , Plant Viruses/classification , Plant Viruses/isolation & purification , Soil Microbiology , Tombusviridae/physiology
17.
Eukaryot Cell ; 8(3): 262-70, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19114501

ABSTRACT

We report characterization of the gene encoding putative transcription factor PRO1, identified in transcriptional profiling studies as being downregulated in the chestnut blight fungus Cryphonectria parasitica in response to infection by virulence-attenuating hypoviruses. Sequence analysis confirmed that pro1 encodes a Zn(II)(2)Cys(6) binuclear cluster DNA binding protein with significant sequence similarity to the pro1 gene product that controls fruiting body development in Sordaria macrospora. Targeted disruption of the C. parasitica pro1 gene resulted in two phenotypic changes that also accompany hypovirus infection, a significant reduction in asexual sporulation that could be reversed by exposure to high light intensity, and loss of female fertility. The pro1 disruption mutant, however, retained full virulence. Although hypovirus CHV1-EP713 infection was established in the pro1 disruption mutant, infected colonies continually produced virus-free sectors, suggesting that PRO1 is required for stable maintenance of hypovirus infection. These results complement the recent characterization of the hypovirus-responsive homologue of the Saccharomyces cerevisiae Ste12 C(2)H(2) zinc finger transcription factor gene, cpst12, which was shown to be required for C. parasitica female fertility and virulence.


Subject(s)
Ascomycota/enzymology , Ascomycota/virology , Fungal Proteins/metabolism , Phosphotransferases (Carboxyl Group Acceptor)/metabolism , Plant Diseases/microbiology , RNA Viruses/physiology , Reproduction, Asexual , Aesculus/microbiology , Amino Acid Sequence , Ascomycota/pathogenicity , Ascomycota/physiology , Fungal Proteins/chemistry , Fungal Proteins/genetics , Molecular Sequence Data , Phosphotransferases (Carboxyl Group Acceptor)/chemistry , Phosphotransferases (Carboxyl Group Acceptor)/genetics , Sequence Alignment , Spores, Fungal/enzymology , Spores, Fungal/genetics , Spores, Fungal/physiology , Spores, Fungal/virology , Virulence
18.
J Microbiol ; 46(1): 95-9, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18337700

ABSTRACT

Double-stranded RNAs and virus particles were identified in Pleurotus ostreatus strain Shin-Nong in Korea. Isometric virus particles with a diameter of 33 nm were purified, which are similar to other Pleurotus viruses reported previously. This strain contains 5 dsRNAs, 8.0, 2.5, 2.4, 2.0, and 1.8 kb in size. The virus particles contain 2 dsRNAs, designated RNA-1 (2.5 kb), and RNA-2 (2.4 kb) which is a typical pattern of Partitiviridae. A non-encapsidated dsRNA of about 8.0 kb also was identified. Partial cDNA from RNA-1 was cloned, and sequence analysis revealed that this gene codes for RdRp. The comparison of the sequence from partial cDNA clone showed 35% amino acid homology with the C-terminal end of the RdRp gene of Helicobasidum mompa virus and Rosalinia necatrix virus. Specific primers designed from the partial sequences successfully amplified RT-PCR product from the infected mycelium and a single spore culture. We used these primers to determine the pattern of distribution of viruses in spores. Of the 96 different single spore cultures generated from Shin-Nong strain, a specific RT-PCR product was identified in 25 cultures, indicating that about 26% of basidiospores contain viruses.


Subject(s)
Pleurotus/virology , RNA Viruses/isolation & purification , RNA, Double-Stranded/genetics , Spores, Fungal/virology , Amino Acid Sequence , Cloning, Molecular , DNA Primers , DNA, Complementary/genetics , Molecular Sequence Data , Pleurotus/physiology , RNA/genetics , RNA Viruses/genetics , RNA, Double-Stranded/chemistry , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis , Spores, Fungal/genetics , Viral Proteins/genetics , Virion/isolation & purification , Virion/ultrastructure
19.
Virol J ; 4: 37, 2007 Apr 05.
Article in English | MEDLINE | ID: mdl-17411435

ABSTRACT

BACKGROUND: Plasmodiophorids and chytrids are zoosporic parasites of algae and land plant and are distributed worldwide. There are 35 species belonging to the order Plasmodiophorales and three species, Polymyxa betae, P. graminis, and Spongospora subterranea, are plant viral vectors. Plasmodiophorid transmitted viruses are positive strand RNA viruses belonging to five genera. Beet necrotic yellow vein virus (BNYVV) and its vector, P. betae, are the causal agents for rhizomania. RESULTS: Evidence of BNYVV replication and movement proteins associating with P. betae resting spores was initially obtained using immunofluorescence labeling and well characterized antisera to each of the BNYVV proteins. Root cross sections were further examined using immunogold labeling and electron microscopy. BNYVV proteins translated from each of the four genomic and subgenomic RNAs accumulate inside P. betae resting spores and zoospores. Statistical analysis was used to determine if immunolabelling detected viral proteins in specific subcellular domains and at a level greater than in control samples. CONCLUSION: Virus-like particles were detected in zoosporangia. Association of BNYVV replication and movement proteins with sporangial and sporogenic stages of P. betae suggest that BNYVV resides inside its vector during more than one life cycle stage. These data suggest that P. betae might be a host as well as a vector for BNYVV.


Subject(s)
Beta vulgaris/virology , Fungi/virology , Plant Viruses/isolation & purification , RNA Viruses/isolation & purification , Fluorescent Antibody Technique , Immunohistochemistry , Plant Viruses/physiology , RNA Viruses/physiology , Spores, Fungal/virology , Viral Proteins/analysis , Virus Assembly
20.
Virus Res ; 124(1-2): 38-43, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17081641

ABSTRACT

Epichloë festucae (Ascomycota) infects the grass Festuca rubra. Infected plants may be more resistant to herbivores and obtain other benefits. The 5109bp dsRNA genome of a virus which infects E. festucae was sequenced, and its incidence in natural populations and transmission were studied. The viral genome has characteristics of the family Totiviridae. Its two ORFs are overlapped by four nucleotides; ORF1 codes a 765 amino acid putative coat protein (CP); ORF2 is in a -1 frameshift with respect to ORF1, and codes a 826 amino acid RNA dependent RNA polymerase (RdRp). This virus, denominated Epichloë festucae virus 1 (EfV1), is closely related to members of the genus Totivirus which infect filamentous fungi, as deduced from phylogenetic analyses of CPs and RdRps. In two natural populations of Epichloë festucae, 36.4% of the isolates were infected by EfV1. The virus was efficiently transmitted to asexual fungal spores. However, when ascospore progeny of matings between virus-free and infected strains was analyzed, it was found that the virus was not transmitted to progeny of sexual spores.


Subject(s)
Ascomycota/virology , Totivirus/classification , Totivirus/isolation & purification , Base Sequence , Capsid Proteins/genetics , Festuca/microbiology , Genome, Viral , Molecular Sequence Data , Open Reading Frames/genetics , Phylogeny , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/genetics , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Spores, Fungal/virology , Totivirus/genetics
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