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1.
J Agric Food Chem ; 72(26): 14535-14546, 2024 Jul 03.
Article in English | MEDLINE | ID: mdl-38906830

ABSTRACT

The development of new fungicide molecules is a crucial task for agricultural chemists to enhance the effectiveness of fungicides in agricultural production. In this study, a series of novel fluoroalkenyl modified succinate dehydrogenase inhibitors were synthesized and evaluated for their antifungal activities against eight fungi. The results from the in vitro antifungal assay demonstrated that compound 34 exhibited superior activity against Rhizoctonia solani with an EC50 value of 0.04 µM, outperforming commercial fluxapyroxad (EC50 = 0.18 µM) and boscalid (EC50 = 3.07 µM). Furthermore, compound 34 showed similar effects to fluxapyroxad on other pathogenic fungi such as Sclerotinia sclerotiorum (EC50 = 1.13 µM), Monilinia fructicola (EC50 = 1.61 µM), Botrytis cinerea (EC50 = 1.21 µM), and also demonstrated protective and curative efficacies in vivo on rapeseed leaves and tomato fruits. Enzyme activity experiments and protein-ligand interaction analysis by surface plasmon resonance revealed that compound 34 had a stronger inhibitory effect on succinate dehydrogenase compared to fluxapyroxad. Additionally, molecular docking and DFT calculation confirmed that the fluoroalkenyl unit in compound 34 could enhance its binding capacity with the target protein through p-π conjugation and hydrogen bond interactions.


Subject(s)
Drug Design , Enzyme Inhibitors , Fungal Proteins , Fungicides, Industrial , Rhizoctonia , Succinate Dehydrogenase , Succinate Dehydrogenase/antagonists & inhibitors , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/metabolism , Fungicides, Industrial/pharmacology , Fungicides, Industrial/chemistry , Fungicides, Industrial/chemical synthesis , Rhizoctonia/drug effects , Rhizoctonia/enzymology , Structure-Activity Relationship , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemical synthesis , Fungal Proteins/antagonists & inhibitors , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Plant Diseases/microbiology , Molecular Docking Simulation , Botrytis/drug effects , Botrytis/enzymology , Ascomycota/drug effects , Ascomycota/enzymology , Solanum lycopersicum/microbiology , Solanum lycopersicum/chemistry , Molecular Structure
2.
J Agric Food Chem ; 72(20): 11308-11320, 2024 May 22.
Article in English | MEDLINE | ID: mdl-38720452

ABSTRACT

The dearomatization at the hydrophobic tail of the boscalid was carried out to construct a series of novel pyrazole-4-carboxamide derivatives containing an oxime ether fragment. By using fungicide-likeness analyses and virtual screening, 24 target compounds with theoretical strong inhibitory effects against fungal succinate dehydrogenase (SDH) were designed and synthesized. Antifungal bioassays showed that the target compound E1 could selectively inhibit the in vitro growth of R. solani, with the EC50 value of 1.1 µg/mL that was superior to that of the agricultural fungicide boscalid (2.2 µg/mL). The observations by scanning electron microscopy (SEM) and transmission electron microscopy (TEM) demonstrated that E1 could reduce mycelial density and significantly increase the mitochondrial number in mycelia cytoplasm, which was similar to the phenomenon treated with boscalid. Enzyme activity assay showed that the E1 had the significant inhibitory effect against the SDH from R. solani, with the IC50 value of 3.3 µM that was superior to that of boscalid (7.9 µM). The mode of action of the target compound E1 with SDH was further analyzed by molecular docking and molecular dynamics simulation studies. Among them, the number of hydrogen bonds was significantly more in the SDH-E1 complex than that in the SDH-boscalid complex. This research on the dearomatization strategy of the benzene ring for constructing pyrazole-4-carboxamides containing an oxime ether fragment provides a unique thought to design new antifungal drugs targeting SDH.


Subject(s)
Drug Design , Enzyme Inhibitors , Fungicides, Industrial , Oximes , Pyrazoles , Succinate Dehydrogenase , Succinate Dehydrogenase/antagonists & inhibitors , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/metabolism , Pyrazoles/chemistry , Pyrazoles/pharmacology , Pyrazoles/chemical synthesis , Fungicides, Industrial/pharmacology , Fungicides, Industrial/chemistry , Fungicides, Industrial/chemical synthesis , Structure-Activity Relationship , Oximes/chemistry , Oximes/pharmacology , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/chemical synthesis , Fungal Proteins/chemistry , Fungal Proteins/antagonists & inhibitors , Fungal Proteins/metabolism , Molecular Docking Simulation , Rhizoctonia/drug effects , Ethers/chemistry , Ethers/pharmacology , Molecular Structure
3.
Int J Biol Macromol ; 267(Pt 1): 131407, 2024 May.
Article in English | MEDLINE | ID: mdl-38582463

ABSTRACT

Succinate dehydrogenase (SDH) is an important inner mitochondrial membrane-bound enzyme involved in redox reactions during the tricarboxylic acid cycle. Therefore, a series of novel chitosan derivatives were designed and synthesized as potential microbicides targeting SDH and precisely characterized by FTIR, 1H NMR and SEM. Their antifungal and antibacterial activities were evaluated against Botrytis cinerea, Fusarium graminearum, Staphylococcus aureus and Escherichia coli. The bioassays revealed that these chitosan derivatives exerted significant antifungal effects, with four of the compounds achieving 100 % inhibition of Fusarium graminearum merely at a concentration of 0.5 mg/mL. Additionally, CSGDCH showed 79.34 % inhibition of Botrytis cinerea at a concentration of 0.1 mg/mL. In vitro antibacterial tests revealed that CSGDCH and CSGDBH have excellent Staphylococcus aureus and Escherichia coli inhibition with MICs of 0.0156 mg/mL and 0.03125 mg/mL, respectively. Molecular docking studies have been carried out to explore the binding energy and binding mode of chitosan and chitosan derivatives with SDH. The analyses indicated that chitosan derivatives targeted the active site of the SDH protein more precisely, disrupting its normal function and ultimately repressing the growth of microbial cells. Furthermore, the chitosan derivatives were also evaluated biologically for antioxidation, and all of these compounds had a greater degree of reducing power, superoxide radical, hydroxyl radical and DPPH-radical scavenging activity than chitosan. This research has the potential for the development of agricultural antimicrobial agents.


Subject(s)
Antioxidants , Chitosan , Enzyme Inhibitors , Molecular Docking Simulation , Schiff Bases , Succinate Dehydrogenase , Chitosan/chemistry , Chitosan/pharmacology , Succinate Dehydrogenase/antagonists & inhibitors , Succinate Dehydrogenase/metabolism , Succinate Dehydrogenase/chemistry , Schiff Bases/chemistry , Schiff Bases/pharmacology , Schiff Bases/chemical synthesis , Antioxidants/pharmacology , Antioxidants/chemistry , Antioxidants/chemical synthesis , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/chemical synthesis , Glycine/chemistry , Glycine/analogs & derivatives , Glycine/pharmacology , Anti-Infective Agents/pharmacology , Anti-Infective Agents/chemistry , Anti-Infective Agents/chemical synthesis , Staphylococcus aureus/drug effects , Microbial Sensitivity Tests , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/chemical synthesis , Escherichia coli/drug effects , Antifungal Agents/pharmacology , Antifungal Agents/chemistry , Antifungal Agents/chemical synthesis , Fusarium/drug effects , Botrytis/drug effects , Chemistry Techniques, Synthetic
4.
Exp Biol Med (Maywood) ; 248(3): 263-270, 2023 02.
Article in English | MEDLINE | ID: mdl-36691338

ABSTRACT

Succinate dehydrogenase complex subunit C (SDHC) is a subunit of mitochondrial complex II (MCII), which is also known as succinate dehydrogenase (SDH) or succinate: ubiquinone oxidoreductase. Mitochondrial complex II is the smallest respiratory complex in the respiratory chain and contains four subunits. SDHC is a membrane-anchored subunit of SDH, which connects the tricarboxylic acid cycle and the electron transport chain. SDH regulates several physiological processes within cells, plays an important role in generating energy to maintain normal cell growth, and is involved in apoptosis. Currently, SDHC is generally recognized as a tumor-suppressor gene. SDHC mutations can cause oxidative damage in the body. It is closely related to the occurrence and development of cancer, neurodegenerative diseases, and aging-related diseases. Here, we review studies on the structure, biological function, related diseases of SDHC, and the mev-1 Animal Model of SDHC Mutation and its potential use as a therapeutic target of certain human diseases.


Subject(s)
Citric Acid Cycle , Succinate Dehydrogenase , Animals , Humans , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/genetics , Succinate Dehydrogenase/metabolism , Mutation , Oxidative Stress , Cell Proliferation
5.
Chem Biol Drug Des ; 101(1): 9-23, 2023 01.
Article in English | MEDLINE | ID: mdl-34981652

ABSTRACT

To discover new nematicidal succinate dehydrogenase (SDH) inhibitors with novel structures, we conducted a virtual screening of the ChemBridge library with 1.7 million compounds based on ligand-pocket interactions. The homology model of Caenorhabditis elegans SDH was established, along with a pharmacophore model based on ligand-pocket interactions. After the pharmacophore-based and docking-based screening, 19 compounds were selected for the subsequent enzymatic assays. The results showed that compound 1 (ID: 7607321) exhibited inhibitory activity against SDH with a determined IC50 value of 19.6 µM. Structural modifications and nematicidal activity studies were then carried out, which provided further evidence that compound 1 exhibited excellent nematicidal activity. Molecular dynamics simulations were then conducted to investigate the underlying molecular basis for the potency of these inhibitors against SDH. This work provides a reliable strategy and useful information for the future design of nematode SDH inhibitors.


Subject(s)
Enzyme Inhibitors , Succinate Dehydrogenase , Ligands , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/metabolism , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemistry , Molecular Dynamics Simulation , Molecular Docking Simulation
6.
Pest Manag Sci ; 79(10): 3425-3438, 2023 Oct.
Article in English | MEDLINE | ID: mdl-36562216

ABSTRACT

BACKGROUND: Succinate dehydrogenase is an important target of fungicides. Succinate dehydrogenase inhibitors (SDHIs) have widely been used to combat destructive plant pathogenic fungi because they possess efficient and broad-spectrum antifungal activities and as well as unique mode of action. The research and development of novel SDHIs have been ongoing. RESULTS: Thirty-six novel quinolin-2(1H)-one derivatives were designed, synthesized and characterized. The single crystal structure of compound 3c was determined through the X-ray diffraction of single crystals. The bioassay results displayed that most compounds had good antifungal activities at 16 µg mL-1 against Rhizoctonia cerealis, Erysiphe graminis, Botrytis cinerea, Penicillium italicum and Phytophthora infestans. Compounds 6o, 6p and 6r had better antifungal activities than the commercialized fungicide pyraziflumid against Botrytis cinerea. Their half maximal effective concentration (EC50 ) values were 0.398, 0.513, 0.205 and 0.706 µg mL-1 , respectively. Moreover, the inhibiting activities of the bioactive compounds were tested against succinate dehydrogenase. The results indicated that they possessed outstanding activities. Compounds 6o, 6p and 6r also exhibited better inhibiting activities than pyraziflumid against succinate dehydrogenase. Their half maximal inhibitory concentration (IC50 ) values were 0.450, 0.672, 0.232 and 0.858 µg mL-1 , respectively. The results of molecular dynamic (MD) simulations indicated that compound 6r displayed stronger affinity to succinate dehydrogenase than pyraziflumid. CONCLUSION: The results of the present study displayed that quinolin-2(1H)-one derivative could be one scaffold of potential SDHIs and will provide some valuable information for the research and development of new SDHIs. © 2022 Society of Chemical Industry.


Subject(s)
Fungicides, Industrial , Fungicides, Industrial/chemistry , Antifungal Agents/chemistry , Structure-Activity Relationship , Succinate Dehydrogenase/chemistry , Molecular Docking Simulation
7.
Int J Mol Sci ; 23(3)2022 Jan 29.
Article in English | MEDLINE | ID: mdl-35163522

ABSTRACT

Plant diseases that are caused by fungi and nematodes have become increasingly serious in recent years. However, there are few pesticide chemicals that can be used for the joint control of fungi and nematodes on the market. To solve this problem, a series of novel 1,2,4-oxadiazole derivatives containing amide fragments were designed and synthesized. Additionally, the bioassays revealed that the compound F15 demonstrated excellent antifungal activity against Sclerotinia sclerotiorum (S. sclerotiorum) in vitro, and the EC50 value of that was 2.9 µg/mL, which is comparable with commonly used fungicides thifluzamide and fluopyram. Meanwhile, F15 demonstrated excellent curative and protective activity against S. sclerotiorum-infected cole in vivo. The scanning electron microscopy results showed that the hyphae of S. sclerotiorum treated with F15 became abnormally collapsed and shriveled, thereby inhibiting the growth of the hyphae. Furthermore, F15 exhibited favorable inhibition against the succinate dehydrogenase (SDH) of the S. sclerotiorum (IC50 = 12.5 µg/mL), and the combination mode and binding ability between compound F15 and SDH were confirmed by molecular docking. In addition, compound F11 showed excellent nematicidal activity against Meloidogyne incognita at 200 µg/mL, the corrected mortality rate was 93.2%, which is higher than that of tioxazafen.


Subject(s)
Antifungal Agents/chemical synthesis , Ascomycota/growth & development , Oxadiazoles/chemical synthesis , Succinate Dehydrogenase/metabolism , Amides/chemistry , Antifungal Agents/chemistry , Antifungal Agents/pharmacology , Ascomycota/drug effects , Ascomycota/metabolism , Cell Line , Drug Design , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Humans , Hyphae/drug effects , Hyphae/growth & development , Hyphae/metabolism , Microbial Viability/drug effects , Models, Molecular , Molecular Structure , Oxadiazoles/chemistry , Oxadiazoles/pharmacology , Plants/drug effects , Plants/microbiology , Plants/parasitology , Protein Conformation , Structure-Activity Relationship , Succinate Dehydrogenase/chemistry
8.
Molecules ; 26(22)2021 Nov 11.
Article in English | MEDLINE | ID: mdl-34833907

ABSTRACT

Botrytis cinerea is a ubiquitous fungus that affects hundreds of plants, resulting in economic losses to the horticulture and fruit industry. The search for new antifungal agents is a matter of current interest. Thus, in this work a series of geranylated phenols in which the side alkyl chain has been hydrated have been synthesized, and their activity against B. cinerea has been evaluated. The coupling of phenol and geraniol has been accomplished under microwave irradiation obtaining the highest reaction yields in the shortest reaction times. Hydration of the side chain was carried out in dioxane with p-toluenesulfonic acid polymer-bound as the catalyst. All synthesized compounds were tested against B. cinerea using the growth inhibition assay and EC50 values were determined. The results show that activity depends on the number and nature of functional groups in the phenol ring and hydration degree of the geranyl chain. The most active compound is 1,4-dihydroquinone with one hydroxyl group attached at the end of the alkyl chain. Results from a molecular docking study suggest that hydroxyl groups in the phenol ring and alkyl chain are important in the binding of compounds to the active site, and that the experimental antifungal activity correlates with the number of H-bond that can be formed in the binding site.


Subject(s)
Antifungal Agents/pharmacology , Botrytis/drug effects , Fungicides, Industrial/pharmacology , Phenols/pharmacology , Terpenes/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Botrytis/growth & development , Fungicides, Industrial/chemical synthesis , Fungicides, Industrial/chemistry , Molecular Docking Simulation , Phenols/chemical synthesis , Phenols/chemistry , Structure-Activity Relationship , Succinate Dehydrogenase/antagonists & inhibitors , Succinate Dehydrogenase/chemistry , Terpenes/chemical synthesis , Terpenes/chemistry
9.
FEBS J ; 288(18): 5430-5445, 2021 09.
Article in English | MEDLINE | ID: mdl-33755328

ABSTRACT

A subset of flavoproteins has a covalently attached flavin prosthetic group enzymatically attached via phosphoester bonding. In prokaryotes, this is catalysed by alternative pyrimidine biosynthesis E (ApbE) flavin transferases. ApbE-like domains are present in few eukaryotic taxa, for example the N-terminal domain of fumarate reductase (FRD) of Trypanosoma, a parasitic protist known as a tropical pathogen causing African sleeping sickness. We use the versatile reverse genetic tools available for Trypanosoma to investigate the flavinylation of glycosomal FRD (FRDg) in vivo in the physiological and organellar context. Using direct in-gel fluorescence detection of covalently attached flavin as proxy for activity, we show that the ApbE-like domain of FRDg has flavin transferase activity in vivo. The ApbE domain is preceded by a consensus flavinylation target motif at the extreme N terminus of FRDg, and serine 9 in this motif is essential as flavin acceptor. The preferred mode of flavinylation in the glycosome was addressed by stoichiometric expression and comparison of native and catalytically inactive ApbE domains. In addition to the trans-flavinylation activity, the ApbE domain catalyses the intramolecular cis-flavinylation with at least fivefold higher efficiency. We discuss how the higher efficiency due to unusual fusion of the ApbE domain to its substrate protein FRD may provide a selective advantage by faster FRD biogenesis during rapid metabolic adaptation of trypanosomes. The first 37 amino acids of FRDg, including the consensus motif, are sufficient as flavinylation target upon fusion to other proteins. We propose FRDg(1-37) as 4-kDa heat-stable, detergent-resistant fluorescent protein tag and suggest its use as a new tool to study glycosomal protein import.


Subject(s)
Flavoproteins/genetics , Succinate Dehydrogenase/genetics , Transferases/genetics , Trypanosoma brucei brucei/genetics , Dinitrocresols/metabolism , Flavoproteins/chemistry , Humans , Protein Domains/genetics , Protein Transport/genetics , Pyrimidines/biosynthesis , Succinate Dehydrogenase/chemistry , Trypanosoma brucei brucei/pathogenicity , Trypanosomiasis, African/genetics , Trypanosomiasis, African/parasitology , Tryptophan/analogs & derivatives , Tryptophan/genetics
10.
J Agric Food Chem ; 69(4): 1214-1223, 2021 Feb 03.
Article in English | MEDLINE | ID: mdl-33480684

ABSTRACT

A series of new fungicides that can inhibit the succinate dehydrogenase (SDH) was classified and named as SDH inhibitors by the Fungicide Resistance Action Committee in 2009. To develop more potential SDH inhibitors, we designed and synthesized a novel series of N-(substituted pyridine-4-yl)-1-(substituted phenyl)-5-trifluoromethyl-1H-pyrazole-4-carboxamide derivatives, 4a-4i, namely, 5a-5h, 6a-6h, and 7a-7j. The bioassay results demonstrated that some title compounds exhibited excellent antifungal activity against four tested phytopathogenic fungi (Gibberella zea, Fusarium oxysporum, Cytospora mandshurica, and Phytophthora infestans). The EC50 values were 1.8 µg/mL for 7a against G. zeae, 1.5 and 3.6 µg/mL for 7c against F. oxysporum and C. mandshurica, respectively, and 6.8 µg/mL for 7f against P. infestans. The SDH enzymatic activity testing revealed that the IC50 values of 4c, 5f, 7f, and penthiopyrad were 12.5, 135.3, 6.9, and 223.9 µg/mL, respectively. The molecular docking results of this series of title compounds with SDH model demonstrated that the compounds could completely locate inside of the pocket, the body fragment formed H bonds, and the phenyl ring showed a π-π interaction with Arg59, suggesting that these novel 5-trifluoromethyl-pyrazole-4-carboxamide derivatives might target SDH. These results could provide a benchmark for understanding the antifungal activity against the phytopathogenic fungus P. infestans and prompt us to discover more potent SDH inhibitors.


Subject(s)
Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Fungal Proteins/antagonists & inhibitors , Fungicides, Industrial/chemistry , Fungicides, Industrial/pharmacology , Pyrazoles/chemistry , Pyrazoles/pharmacology , Succinate Dehydrogenase/antagonists & inhibitors , Enzyme Inhibitors/chemical synthesis , Fungal Proteins/chemistry , Fungicides, Industrial/chemical synthesis , Fusarium/drug effects , Fusarium/enzymology , Molecular Docking Simulation , Quantitative Structure-Activity Relationship , Succinate Dehydrogenase/chemistry
11.
J Agric Food Chem ; 68(49): 14426-14437, 2020 Dec 09.
Article in English | MEDLINE | ID: mdl-33216530

ABSTRACT

The pyrazole-4-carboxamide scaffold containing a flexible amide chain has emerged as the molecular skeleton of highly efficient agricultural fungicides targeting succinate dehydrogenase (SDH). Based on the above vital structural features of succinate dehydrogenase inhibitors (SDHI), three types of novel pyrazole-4-formylhydrazine derivatives bearing a diphenyl ether moiety were rationally conceived under the guidance of a virtual docking comparison between bioactive molecules and SDH. Consistent with the virtual verification results of a molecular docking comparison, the in vitro antifungal bioassays indicated that the skeleton structure of title compounds should be optimized as an N'-(4-phenoxyphenyl)-1H-pyrazole-4-carbohydrazide scaffold. Strikingly, N'-(4-phenoxyphenyl)-1H-pyrazole-4-carbohydrazide derivatives 11o against Rhizoctonia solani, 11m against Fusarium graminearum, and 11g against Botrytis cinerea exhibited excellent antifungal effects, with corresponding EC50 values of 0.14, 0.27, and 0.52 µg/mL, which were obviously better than carbendazim against R. solani (0.34 µg/mL) and F. graminearum (0.57 µg/mL) as well as penthiopyrad against B. cinerea (0.83 µg/mL). The relative studies on an in vivo bioassay against R. solani, bioactive evaluation against SDH, and molecular docking were further explored to ascertain the practical value of compound 11o as a potential fungicide targeting SDH. The present work provided a non-negligible complement for the structural optimization of antifungal leads targeting SDH.


Subject(s)
Fungal Proteins/antagonists & inhibitors , Fungicides, Industrial/chemistry , Hydrazines/chemistry , Phenyl Ethers/chemistry , Pyrazoles/chemistry , Succinate Dehydrogenase/antagonists & inhibitors , Botrytis/drug effects , Botrytis/enzymology , Drug Design , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Fungicides, Industrial/pharmacology , Fusarium/drug effects , Fusarium/enzymology , Hydrazines/pharmacology , Molecular Docking Simulation , Phenyl Ethers/pharmacology , Pyrazoles/pharmacology , Rhizoctonia/drug effects , Rhizoctonia/enzymology , Structure-Activity Relationship , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/metabolism
12.
Nat Commun ; 11(1): 4245, 2020 08 25.
Article in English | MEDLINE | ID: mdl-32843629

ABSTRACT

Diheme-containing succinate:menaquinone oxidoreductases (Sdh) are widespread in Gram-positive bacteria but little is known about the catalytic mechanisms they employ for succinate oxidation by menaquinone. Here, we present the 2.8 Å cryo-electron microscopy structure of a Mycobacterium smegmatis Sdh, which forms a trimer. We identified the membrane-anchored SdhF as a subunit of the complex. The 3 kDa SdhF forms a single transmembrane helix and this helix plays a role in blocking the canonically proximal quinone-binding site. We also identified two distal quinone-binding sites with bound quinones. One distal binding site is formed by neighboring subunits of the complex. Our structure further reveals the electron/proton transfer pathway for succinate oxidation by menaquinone. Moreover, this study provides further structural insights into the physiological significance of a trimeric respiratory complex II. The structure of the menaquinone binding site could provide a framework for the development of Sdh-selective anti-mycobacterial drugs.


Subject(s)
Bacterial Proteins/chemistry , Mycobacterium smegmatis/enzymology , Succinate Dehydrogenase/chemistry , Bacterial Proteins/metabolism , Binding Sites , Catalysis , Cryoelectron Microscopy , Electron Transport , Models, Molecular , Multienzyme Complexes/chemistry , Multienzyme Complexes/genetics , Multienzyme Complexes/metabolism , Mycobacterium smegmatis/chemistry , Oxidation-Reduction , Protein Subunits/chemistry , Protein Subunits/metabolism , Structure-Activity Relationship , Succinate Dehydrogenase/metabolism , Succinic Acid/metabolism , Vitamin K 2/metabolism
13.
Dis Model Mech ; 13(10)2020 10 15.
Article in English | MEDLINE | ID: mdl-32859697

ABSTRACT

The conserved B-subunit of succinate dehydrogenase (SDH) participates in the tricarboxylic acid cycle (TCA) cycle and mitochondrial electron transport. The Arg230His mutation in SDHB causes heritable pheochromocytoma/paraganglioma (PPGL). In Caenorhabditiselegans, we generated an in vivo PPGL model (SDHB-1 Arg244His; equivalent to human Arg230His), which manifests delayed development, shortened lifespan, attenuated ATP production and reduced mitochondrial number. Although succinate is elevated in both missense and null sdhb-1(gk165) mutants, transcriptomic comparison suggests very different causal mechanisms that are supported by metabolic analysis, whereby only Arg244His (not null) worms demonstrate elevated lactate/pyruvate levels, pointing to a missense-induced, Warburg-like aberrant glycolysis. In silico predictions of the SDHA-B dimer structure demonstrate that Arg230His modifies the catalytic cleft despite the latter's remoteness from the mutation site. We hypothesize that the Arg230His SDHB mutation rewires metabolism, reminiscent of metabolic reprogramming in cancer. Our tractable model provides a novel tool to investigate the metastatic propensity of this familial cancer and our approach could illuminate wider SDH pathology.This article has an associated First Person interview with the first author of the paper.


Subject(s)
Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans/genetics , Iron-Sulfur Proteins/genetics , Mitochondrial Proteins/genetics , Mutation/genetics , Paraganglioma/genetics , Succinate Dehydrogenase/genetics , Adenosine Triphosphate/biosynthesis , Amino Acid Sequence , Animals , Caenorhabditis elegans Proteins/chemistry , Citric Acid Cycle/genetics , Conserved Sequence , Disease Models, Animal , Gene Expression Profiling , Glycolysis/genetics , Humans , Iron-Sulfur Proteins/chemistry , L-Lactate Dehydrogenase/antagonists & inhibitors , L-Lactate Dehydrogenase/metabolism , Mitochondria/metabolism , Mitochondrial Proteins/chemistry , Phenotype , Protein Subunits/genetics , RNA Interference , Succinate Dehydrogenase/chemistry
14.
Biol Chem ; 401(3): 319-330, 2020 02 25.
Article in English | MEDLINE | ID: mdl-31408429

ABSTRACT

Succinate dehydrogenase (SDH), complex II or succinate:quinone oxidoreductase (SQR) is a crucial enzyme involved in both the tricarboxylic acid (TCA) cycle and oxidative phosphorylation (OXPHOS), the two primary metabolic pathways for generating ATP. Impaired function of SDH results in deleterious disorders from cancer to neurodegeneration. SDH function is tailored to meet the energy demands in different cell types. Thus, understanding how SDH function is regulated and how it operates in distinct cell types can support the development of therapeutic approaches against the diseases. In this article we discuss the molecular pathways which regulate SDH function and describe extra roles played by SDH in specific cell types.


Subject(s)
Epigenesis, Genetic/genetics , Succinate Dehydrogenase/genetics , Succinate Dehydrogenase/metabolism , Gene Expression Regulation, Enzymologic/genetics , Humans , Protein Conformation , Protein Processing, Post-Translational/genetics , Succinate Dehydrogenase/chemistry
15.
J Agric Food Chem ; 67(47): 13185-13194, 2019 Nov 27.
Article in English | MEDLINE | ID: mdl-31697490

ABSTRACT

In searching for novel fungicidal leads, the novel bioactive succinate dehydrogenase inhibitor (SDHI) derivatives were designed and synthesized by the inversion of carbonyl and amide groups. Bioassay indicated that compound 5i stood out with a broad spectrum of in vitro activity against five fungi. Its EC50 value (0.73 µg/mL) was comparable to that of boscalid (EC50 of 0.51 µg/mL) and fluxapyroxad (EC50 of 0.19 µg/mL) against Sclerotinia sclerotiorum. For Rhizoctonia cerealis, 5i and 5p with EC50 values of 4.61 and 6.48 µg/mL, respectively, showed significantly higher activity than fluxapyroxad with the EC50 value of 16.99 µg/mL. In vivo fungicidal activity of 5i exhibited an excellent inhibitory rate (100%) against Puccinia sorghi at 50 µg/mL, while the positive control boscalid showed only a 70% inhibitory rate. Moreover, 5i showed promising fungicidal activity with a 60% inhibitory rate against Rhizoctonia solani at 1 µg/mL, which was better than that of boscalid (30%). Compound 5i possessed better in vivo efficacy against P. sorghi and R. solani than boscalid. Molecular docking showed that even the carbonyl oxygen atom of 5i was far from the pyrazole ring. It could also form hydrogen bonds toward the hydroxyl hydrogen and amino hydrogen of TYR58 and TRP173 on SDH, respectively, which consisted of the positive control fluxapyroxad. Fluorescence quenching analysis and SDH enzymatic inhibition studies also validated its mode of action. Our studies showed that 5i was worthy of further investigation as a promising fungicide candidate.


Subject(s)
Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Fungal Proteins/antagonists & inhibitors , Fungicides, Industrial/chemical synthesis , Fungicides, Industrial/pharmacology , Succinate Dehydrogenase/antagonists & inhibitors , Ascomycota/chemistry , Ascomycota/drug effects , Ascomycota/enzymology , Enzyme Inhibitors/chemistry , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Fungicides, Industrial/chemistry , Molecular Docking Simulation , Rhizoctonia/chemistry , Rhizoctonia/drug effects , Rhizoctonia/enzymology , Structure-Activity Relationship , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/metabolism
16.
J Agric Food Chem ; 67(50): 13892-13903, 2019 Dec 18.
Article in English | MEDLINE | ID: mdl-31774673

ABSTRACT

A novel simple 1,3,4-oxadiazole-2-carbohydrazide was reported to discover low-cost and versatile antifungal agents. Bioassay results suggested that a majority of the designed compounds were extremely bioactive against four types of fungi and two kinds of oomycetes. This extreme bioactivity was highlighted by the applausive inhibitory effects of compounds 4b, 4h, 5c, 5g, 5h, 5i, 5m, 5p, 5t, and 5v against Gibberella zeae, affording EC50 values ranging from 0.486 to 0.799 µg/mL, which were superior to that of fluopyram (2.96 µg/mL) and comparable to those of carbendazim (0.947 µg/mL) and prochloraz (0.570 µg/mL). Meanwhile, compounds 4g, 5f, 5i, and 5t showed significant actions against Fusarium oxysporum with EC50 values of 0.652, 0.706, 0.813, and 0.925 µg/mL, respectively. Pharmacophore exploration suggested that the N'-phenyl-1,3,4-oxadiazole-2-carbohydrazide pattern is necessary for the bioactivity. Molecular docking of 5h with succinate dehydrogenase (SDH) indicated that it can completely locate the inside of the binding pocket via hydrogen-bonding and hydrophobic interactions, revealing that this novel framework might target SDH. This result was further verified by the significant inhibitory effect on SDH activity. In addition, scanning electron microscopy patterns were performed to elucidate the anti-G. zeae mechanism. Given these features, this type of framework is a suitable template for future exploration of alternative SDH inhibitors against plant microbial infections.


Subject(s)
Enzyme Inhibitors/chemistry , Fungal Proteins/antagonists & inhibitors , Fungicides, Industrial/chemistry , Hydrazines/chemistry , Oxadiazoles/chemistry , Succinate Dehydrogenase/antagonists & inhibitors , Enzyme Inhibitors/pharmacology , Fungal Proteins/chemistry , Fungicides, Industrial/pharmacology , Fusarium/drug effects , Fusarium/enzymology , Hydrazines/pharmacology , Molecular Docking Simulation , Oxadiazoles/pharmacology , Plant Diseases/microbiology , Plant Diseases/prevention & control , Structure-Activity Relationship , Succinate Dehydrogenase/chemistry
17.
J Agric Food Chem ; 67(43): 11901-11910, 2019 Oct 30.
Article in English | MEDLINE | ID: mdl-31584275

ABSTRACT

Encouraged by the successful flexible modifications of the succinate dehydrogenase inhibitors, antifungal activity guided by the divergent synthesis of nicotinamides of the prevalidated pharmacophore 2-(2-oxazolinyl)aniline was conducted. The work highlighted the first utilization of the late-stage C-H functionalization assisted by the innate pharmacophore for the discovery of promising agrochemicals. New synthetic methodology and antifungal exploration of alkoxylated nicotinamides were accomplished. Fifty-five functionalized nicotinamides of 7 types were rationally designed and efficiently prepared through C-H functionalization, which facilitated the acquirement of four N-para aryloxylated nicotinamides (E3, E13, E19, and E22) as potential antifungal candidates against Botrytis cinerea, with the EC50 values lower than 5 mg/L. In vivo/vitro biotest, molecular docking, and structural analysis reconfirmed the novelty and practical potential of the antifungal candidates E3 and E19. This operationally simple platform will provide various "polar parts" and offer intriguing opportunities for the optimization of the carboxamide fungicides and structure-related pharmaceuticals.


Subject(s)
Fungicides, Industrial/chemistry , Niacinamide/chemistry , Botrytis/chemistry , Botrytis/drug effects , Botrytis/enzymology , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Fungal Proteins/antagonists & inhibitors , Fungal Proteins/chemistry , Fungicides, Industrial/pharmacology , Microbial Sensitivity Tests , Molecular Docking Simulation , Molecular Structure , Niacinamide/pharmacology , Plant Diseases/microbiology , Structure-Activity Relationship , Succinate Dehydrogenase/antagonists & inhibitors , Succinate Dehydrogenase/chemistry
18.
Sci Rep ; 9(1): 11377, 2019 08 06.
Article in English | MEDLINE | ID: mdl-31388065

ABSTRACT

Crop disease management often implies repeated application of fungicides. However, the increasing emergence of fungicide-resistant pathogens requires their rotation or combined use. Tank-mix combinations using fungicides with different modes of action are often hard to manage by farmers. An alternative and unexploited strategy are bifunctional fungicides, i.e. compounds resulting from conjugation of the pharmacophores of fungicides with different mechanisms of action. In this paper we describe a new approach to antifungal treatments based on the synthesis of dual agents, obtained by merging the strobilurin and succinate dehydrogenase inhibitor pharmacophores into a new entity. The compounds were tested against important fungal plant pathogens and showed good inhibition of Pyricularia oryzae and Sclerotinia sclerotiorum with activity comparable to commercial fungicides. The inhibition of the cytochrome bc1 and the succinate dehydrogenase enzyme activity confirmed that the new molecules are endowed with a dual mechanism of action. These results were further supported by molecular modelling which showed that selected compounds form stable complexes with both cytochrome b subunit and succinate dehydrogenase enzyme. This work can be considered an important first step towards the development of novel dual-action agents with optimized structure and improved interaction with the targets.


Subject(s)
Antifungal Agents/pharmacology , Ascomycota/drug effects , Cytochromes b/antagonists & inhibitors , Strobilurins/pharmacology , Succinate Dehydrogenase/antagonists & inhibitors , Antifungal Agents/chemistry , Ascomycota/enzymology , Ascomycota/metabolism , Cytochromes b/chemistry , Cytochromes b/metabolism , Drug Resistance, Fungal , Fungal Proteins/antagonists & inhibitors , Molecular Docking Simulation , Plant Diseases/microbiology , Protein Conformation , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/metabolism
19.
Cell Mol Life Sci ; 76(20): 4023-4042, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31236625

ABSTRACT

Succinate dehydrogenase (SDH) also known as complex II or succinate:quinone oxidoreductase is an enzyme involved in both oxidative phosphorylation and tricarboxylic acid cycle; the processes that generate energy. SDH is a multi-subunit enzyme which requires a series of proteins for its proper assembly at several steps. This enzyme has medical significance as there is a broad range of human diseases from cancers to neurodegeneration related to SDH malfunction. Some of these disorders have recently been linked to defective assembly factors, reinvigorating further research in this area. Apart from that this enzyme has agricultural importance as many fungicides have been/will be designed targeting specifically this enzyme in plant fungal pathogens. In addition, we speculate it might be possible to design novel fungicides specifically targeting fungal assembly factors. Considering the medical and agricultural implications of SDH, the aim of this review is an overview of the SDH assembly factors and critical analysis of controversial issues around them.


Subject(s)
Mitochondria/enzymology , Neoplasms/enzymology , Neurodegenerative Diseases/enzymology , Protein Subunits/chemistry , Proteins/genetics , Succinate Dehydrogenase/chemistry , Animals , Citric Acid Cycle/genetics , Coenzymes/chemistry , Coenzymes/metabolism , Flavin-Adenine Dinucleotide/chemistry , Flavin-Adenine Dinucleotide/metabolism , Fungal Proteins/antagonists & inhibitors , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Fungi , Fungicides, Industrial/chemistry , Fungicides, Industrial/pharmacology , Gene Expression , Humans , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism , Mitochondria/genetics , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Neoplasms/genetics , Neoplasms/pathology , Neurodegenerative Diseases/genetics , Neurodegenerative Diseases/pathology , Oxidative Phosphorylation , Plants , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Subunits/genetics , Protein Subunits/metabolism , Proteins/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Succinate Dehydrogenase/genetics , Succinate Dehydrogenase/metabolism
20.
Eur J Pharmacol ; 856: 172417, 2019 Aug 05.
Article in English | MEDLINE | ID: mdl-31132358

ABSTRACT

The molecular structure optimization aimed at definite target is expected to improve its anti-myocardial ischemia reperfusion (I/R) injury. Ferulic acid derivatives could probably attenuate myocardial I/R injury when optimized on account of definite target succinate dehydrogenase (SDH). Herein, an original compound hmy-paa (3-(4-hydroxy-3-methoxyphenyl)-N-(1H-pyrazol-3-yl)acrylamide), a combination of ferulic acid and active groups of enzyme inhibitor was synthesized, myocardial cell hypoxia reoxygenation (H/R) model were built, and SDH activity of myocardial cell was detected to investigate the effect of the derivative. Intriguingly, it could selectively inhibit SDH activity, and efficiently abate myocardial cell H/R injury. SDH is located in the mitochondrial inner membrane, and fluorescent hmy-paa could be observed to accumulate in cell and mitochondria through fluorescence inversion microscopy, which allows for more efficient SDH inhibition efficacy. By inhibiting SDH activity, hmy-paa could reduce oxidative damage by preventing excess production of intracellular reactive oxygen species as well as ensure energy production through the regulation of ATP level. The computational docking simulation exhibits a tightly bound mode between hmy-paa and SDH. Consequently, ferulic acid derivative hmy-paa is a new candidate for the treatment of myocardial H/R injury that exerts its therapeutic effect through a SDH dependent antioxidant mechanism. SDH could probably be a new target for drug discovery to alleviate myocardial I/R injury.


Subject(s)
Coumaric Acids/chemistry , Coumaric Acids/pharmacology , Myocardium/cytology , Myocardium/metabolism , Oxygen/metabolism , Succinate Dehydrogenase/metabolism , Adenosine Triphosphate/metabolism , Animals , Antioxidants/chemistry , Antioxidants/metabolism , Antioxidants/pharmacology , Catalytic Domain , Cell Hypoxia/drug effects , Cell Line , Cell Survival/drug effects , Coumaric Acids/metabolism , Intracellular Space/drug effects , Intracellular Space/metabolism , Membrane Potential, Mitochondrial/drug effects , Molecular Docking Simulation , Rats , Reactive Oxygen Species/metabolism , Succinate Dehydrogenase/chemistry , Succinic Acid/metabolism
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