ABSTRACT
Synthetic polymers and comprehensive two-dimensional liquid chromatography (LC × LC) are a synergistic combination. LC × LC provides unique insights in mutually dependent molecular distributions. Synthetic polymers offer clear demonstrations of the value of LC × LC.
ABSTRACT
The present study concerns the application of visualization methods, i.e. coomassie-brilliant-blue-R staining (CBB-R), silver-nitrate staining, and fluorescamine labeling, and subsequent MALDI-MS analysis of intact proteins and peptides on the surface of flat-bed monoliths, intended for spatial two-dimensional chromatographic separations. The use of 100-µm thick macroporous poly(butyl methacrylate-co-ethylene dimethacrylate) flat-bed monoliths renders a fixation step obsolete, so that CBB-R and silver-nitrate staining and destaining could be achieved in 10-15 min as opposed to up to 24h, as is typical on 2D-PAGE gels. The detection limits remained comparable. The compatibility of the monolithic layer with subsequent MALDI-MS analysis of individual proteins and peptide spots was investigated with regards to mass accuracy, mass precision, resolution, and signal intensity. When comparing results from MALDI-MS analysis of proteins and peptides on a flat-bed monolith to results obtained directly on stainless-steel target plates, significant losses in mass precision, signal intensity, and an increased variation in resolution were observed. In addition, a loss in signal intensity up to two orders of magnitude was observed when using monolithic layers. After CCB-R and silver-nitrate staining and destaining to disrupt the protein-dye complexes no MALDI spectra with significant S/N ratios could be achieved. After fluorescamine labeling heterogeneous signals were observed, which resulted from a distribution in the number of fluorescence-labeled lysine groups and from the presence of labeled derivatives that had undergone condensation reactions.
Subject(s)
Chromatography, Liquid/methods , Peptides/analysis , Proteins/analysis , Proteomics/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Chromatography, Liquid/instrumentation , Coloring Agents/chemistry , Limit of Detection , Methacrylates/chemistry , Molecular Weight , Peptides/chemistry , Polymers/chemistry , Proteins/chemistryABSTRACT
Despite its potential, the use of Raman spectroscopy for real-time quantitative reaction monitoring is still rather limited. The problems of fluorescence, laser instability, low intensities, and the inner filter effect often outscore the advantages as narrow bands, the use of glass fibers, and low scattering of water and glass. In this paper, we present real-time quantitative monitoring of the catalyzed Heck reaction by using the solvent as internal standard. In this way, all multiplicative distortions, e.g., laser intensity variations or absorbance of the laser light, can be corrected for. We also show that a limited amount of fluorescence does not hamper the analysis. Finally, we present a new method to correct for the inner filter effect, i.e., the absorbance of Raman scattered light by the reaction medium. Simultaneous absorption measurements of the reaction mixture enable accurate correction of Raman signals for the inner filter effect. Thus, for reaction monitoring applications, a Raman spectrometer should be equipped with an absorbance measurement device.