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Confined masonry (CM) construction is being increasingly adopted for its cost-effectiveness and simplicity, particularly in seismic zones. Despite its known benefits, limited research exists on how the stiffness of confining elements influences the in-plane behavior of CM. This study conducted a comprehensive parametric analysis using experimentally validated numerical models of single-wythe, squat CM wall panels under quasi-static reverse cyclic loading. Various cross-sections and reinforcement ratios were examined to assess the impact of the confining element stiffness on the deformation response, the cracking mechanism, and the hysteretic behavior. The key findings included the observation of symmetrical hysteresis in experimental CM panels under cyclic loading, with a peak lateral strength of 114.3 kN and 108.5 kN in push-and-pull load cycles against 1.7% and 1.3% drift indexes, respectively. A finite element (FE) model was developed based on a simplified micro-modeling approach, demonstrating a maximum discrepancy of 2.6% in the peak lateral load strength and 5.4% in the initial stiffness compared to the experimental results. The parametric study revealed significant improvements in the initial stiffness and seismic strength with increased depth and reinforcement in the confining elements. For instance, a 35% increase in the lateral strength was observed when the depth of the confining columns was augmented from 150 mm to 300 mm. Similarly, increasing the steel reinforcement percentage from 0.17% to 0.78% resulted in a 16.5% enhancement in the seismic strength. These findings highlight the critical role of the stiffness of confining elements in enhancing the seismic performance of CM walls. This study provides valuable design insights for optimizing CM construction in seismic-prone areas, particularly regarding the effects of confining element dimensions and reinforcement ratios on the structural resilience.
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The Cholistani cow is considered one of the milch breeds of Zebu cattle. Despite being heat and tick-resistant, it has not yet gained much popularity among Pakistan dairy farmers due to its long calving interval. This study aimed to understand the basic reproductive physiology of Cholistani cows using sonography and reproductive biotechnologies such as estrus synchronization and timed artificial insemination to improve reproductive efficiency. In experiment 1, six Cholistani cows with mixed parity 3.20 ± 1.30 and weighing 400 kg were selected to monitor ovarian dynamics on alternate days by the same sonographer from the onset of heat through ovulation until the next ovulation. Experiment 2 measured the effect of estrus synchronization methods, controlled internal drug release-gonadotropin-releasing hormone (CIDR-GnRH, n = 31) and Ovsynch (OVS, n = 32) on various reproductive parameters. The mean estrous cycle length was 19.81 ± 0.56 days with two follicular waves. The mean inter-ovulatory interval was 20.80 ± 0.52 days, with a preovulatory follicular size of 13.83 ± 2.37 mm. Estrus response was higher (p > 0.05) in controlled internal drug release (CIDR)-GnRH (93.54%) than in OVS (84.37%) cows. Similarly, ovulation and conception rates were higher in CIDR-GnRH (91.66% vs. 68.42%) than in OVS cows (41.37% vs. 33.33%), respectively. In conclusion, CIDR-GnRH results in a better estrus response, higher ovulation rate, and subsequently greater conception rate than OVS in Bos indicus dairy cows.
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Rotavirus A (RVA) is a leading cause of severe gastroenteritis in children worldwide, and vaccination has become a pivotal strategy to reduce the associated morbidity and mortality. This study presents a molecular characterization of RVA genotypes circulating among vaccinated children in Pakistan during the year 2019. A total of 510 stool samples were collected from children of up to five years of age presenting with acute gastroenteritis symptoms in Rawalpindi, Islamabad regions of Pakistan. The RVA antigen was detected using ELISA on these samples. RVA G/P genotyping was performed on ELISA positive samples using Multiplex semi-nested reverse transcriptase PCR. RVA was found in 130 fecal samples, with an overall prevalence of 25.4 %. G9P[8] (20 %) is the most prevalent genotype, followed by G12P[6] (17 %), G3P[8] (14 %), G1P[8] (12 %), G2P[4] (10 %), G12P[8] (7 %), G9P[6] (7 %), G3P[6] (6 %), G3P[4] (4 %) and G1P[6] (3 %) respectively. There is a statistically significant difference (p < 0.05) found in the group age (in months) of RVA gastroenteritis cases as detected by RT-PCR. The highest number of positive cases was found in the age range from 0 to 6 months, followed by 7-12 months, 13-24 months, and 25-60 months, respectively. Dehydration is statistically significantly associated (pË 0.05) in RVA gastroenteritis cases compared to those who tested negative. This study emphasizes the significance of maintaining a continuous surveillance system and conducting genomic analysis of RVA genotypes in children upto the age of 5 years. This is essential for tracking the circulation of RVA genotypes. The results from this research enhance our comprehension of how RVA genotypes are changing over time in Pakistan, underscoring the ongoing necessity for improving vaccine coverage and effectiveness. This, in turn, can help reduce the impact of RVA-related illnesses in children.
Subject(s)
Feces , Gastroenteritis , Genotype , Rotavirus Infections , Rotavirus Vaccines , Rotavirus , Rotavirus/genetics , Rotavirus/classification , Rotavirus/isolation & purification , Humans , Pakistan/epidemiology , Rotavirus Infections/epidemiology , Rotavirus Infections/virology , Rotavirus Infections/prevention & control , Child, Preschool , Infant , Rotavirus Vaccines/administration & dosage , Gastroenteritis/virology , Gastroenteritis/epidemiology , Feces/virology , Female , Male , Prevalence , Phylogeny , Vaccination/statistics & numerical data , Infant, NewbornABSTRACT
Introduction: Hypertriglyceridemia (HTG) is a complex disorder caused by genetic and environmental factors that frequently results from loss-of-function variants in the gene encoding lipoprotein lipase (LPL). Heterozygous patients have a range of symptoms, while homozygous LPL deficiency presents with severe symptoms including acute pancreatitis, xanthomas, and lipemia retinalis. Methods: We described the clinical characteristics of three Slovenian patients (an 8-year-old female, an 18-year-old man, and a 57-year-old female) and one Pakistani patient (a 59-year-old male) with LPL deficiency. We performed next-generation sequencing (NGS) targeting all coding exons and intron-exon boundaries of the LPL gene, and Sanger sequencing for variant confirmation. In addition, we performed a systematic literature review of all cases with three identified variants and described their clinical characteristics. Results: Two Slovenian patients with a heterozygous pathogenic variant NM_000237.3:c.984G>T (p.Met328Ile) were diagnosed within the first three years of life and had triglyceride (TG) values of 16 and 20 mmol/L. An asymptomatic Pakistani patient with TG values of 36.8 mmol/L until the age of 44 years, was identified as heterozygous for a pathogenic variant NM_000237.3:c.724G>A (p.Asp242Asn). His TG levels dropped to 12.7 mmol/L on dietary modifications and by using fibrates. A Slovenian patient who first suffered from pancreatitis at the age of 18 years with a TG value of 34 mmol/L was found to be homozygous for NM_000237.3:c.337T>C (p.Trp113Arg). Conclusions: Patients with LPL deficiency had high TG levels at diagnosis. Homozygous patients had worse outcomes. Good diet and medication compliance can reduce severity.
Subject(s)
Lipoprotein Lipase , Humans , Male , Female , Slovenia/epidemiology , Adolescent , Middle Aged , Lipoprotein Lipase/genetics , Lipoprotein Lipase/deficiency , Child , Pakistan/epidemiology , Hyperlipoproteinemia Type I/genetics , MutationABSTRACT
The increasing use of road traffic for land transportation has resulted in numerous road accidents and casualties, including those involving oil and gas tanker vehicles. Despite this, little empirical research has been conducted on the factors influencing tanker drivers' performance. This study aims to address this knowledge gap, particularly in the energy transportation industry, by examining the driving performance factors that affect tanker drivers and incorporating risk assessment measures. The model variables were identified from the literature and used to develop a survey questionnaire for the study. A total of 307 surveys were collected from Malaysian oil and gas tanker drivers, and the driving performance factors were contextually adjusted using the Exploratory Factor Analysis (EFA) approach. The driving performance model was developed using partial least squares structural equation modeling (PLS-SEM). The EFA results categorized driving performance into two constructs: 1) drivers' reaction time with ß = 0.320 and 2) attention and vigilance with ß value = 0.749. The proposed model provided full insight into how drivers' reaction time, attention, and vigilance impact drivers' performance in this sector, which can help identify potential risks and prevent accidents. The findings are significant in understanding the factors that affect oil and gas drivers' performance and can aid in enhancing oil and gas transportation management by including effective risk assessment measures to prevent fatal crashes.
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In this work, novel monoclinic tungsten oxide (WO3)-encapsulated phosphate-rich porous sodium alginate (PASA) microspherical hydrogel beads were prepared for efficient U(VI) capture. These macroporous and hollow beads were systematically characterized through XRD, FTIR, EDX-mapping, and SEM-EDS techniques. The O and P atoms in the PO and monoclinic WO3 offered inner-spherical complexation with U(VI). The in situ growth of WO3 played a significant role inside the phosphate-rich biopolymeric network to improve its chemical stability, specific surface area, adsorption capacity, and sorption rate. The phytic acid (PA) served for heteroatom doping and crosslinking. The encapsulated WO3 mass ratio was optimized in different composites, and WO3/PASA3 (the microspherical beads with a mass ratio of 30.0 % w/w) exhibited remarkable maximum sorption capacity qm (336.42 mg/g) computed through the best-fit Langmuir model (R2 ≈ 0.99) and rapid sorption equilibrium, teq (150 min). The isothermal sorption studies were conducted at different temperatures (298, 303, and 308 K) and thermodynamic parameters concluded that the process of U(VI) sorption using WO3/PASA3 is endothermic and feasible having ΔHo (8.19 kJ/mol), ΔGo (-20.75, -21.38, and - 21.86 kJ/mol) and proceeds with a minute increase in randomness ΔSo (0.09 kJ/mol.K). Tungsten oxide (WO3)-encapsulated phosphate-rich porous microspherical beads could be promising material for uranium removal.
Subject(s)
Alginates , Oxides , Tungsten , Uranium , Alginates/chemistry , Adsorption , Phosphates , Porosity , Thermodynamics , Kinetics , Uranium/chemistry , Hydrogen-Ion ConcentrationABSTRACT
Background The aim of study is to assess the prevalence of dental myths and misconceptions among the students of medicine and dentistry in Peshawar, Pakistan, and to gauge the quality of dental education, knowledge, and awareness. Methods A cross-sectional descriptive study was conducted on the current students of medicine and dentistry at Rehman Medical College, Rehman College of Dentistry, Gandhara University, Khyber Medical College, and Khyber College of Dentistry. They were questioned regarding their beliefs in dental misconceptions and myths prevalent in Peshawar, Pakistan. Results The sample comprised 400 undergraduate students, of whom 47.5% (190) were males and 52.5% (210) were females. The most held beliefs were that eating sugar does not affect teeth as long as one brushes twice a day (46%), brushing right after a meal is better for teeth (70%), and the extraction of baby teeth does not matter as they are going to be replaced by the permanent teeth in any case (38%). Most of these misconceptions had a significant association with the field of study. Conclusion The issue of myths and misconceptions regarding dental health and care is widespread, even in the academic community. This should be of significant concern to the relevant authorities, and adequate measures must be taken to dispel such false information.
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Deep dewatering of sewage sludge is essential for optimizing disposal and resource recovery. This study explores the potential of Double Dielectric Barrier Discharge (DDBD) plasma for enhancing waste activated sludge (WAS) dewatering. Key operational parameters (applied voltage, treatment duration, and air feeding rate) were systematically investigated using a two-step approach: Single Factor-at-a-Time (SFAT) and central composite design (CCD) within the response surface methodology (RSM) framework. The aim was to identify influential factors and their optimal settings for maximizing dewatering efficiency while minimizing energy usage. Higher applied voltages (30 kV) and longer treatment durations (40 min) notably improved % moisture reduction (%MR) (92.92 % and 94.35 %, respectively). ANOVA analysis emphasized the equal and substantial impact of applied voltage and treatment duration on %MR and energy efficiency (EE), whereas the air feeding rate exhibited no significant effect. However, it's worth noting that %MR and EE did not display a strictly linear relationship, suggesting complex interactions. Furthermore, two soft sensing models were developed: a quadratic model for %MR and a linear model for energy efficiency (EE). Results showed minimal reductions in TOC content, maintaining values between 13.68 % and 14.28 % compared to untreated sludge 14.37 %. The study also revealed that ROS generated by DDBD plasma played a key role in sludge disintegration, as observed through SEM and FTIR, enhancing dewatering efficiency by the destruction of sludge flocs and the transformation of organic substances. In conclusion, DDBD plasma technology offers a sustainable solution for effective sludge dewatering in WWTPs, preserving organic content.
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BACKGROUND: There are likely to be hundreds of monogenic forms of human male infertility. Whole genome sequencing (WGS) is the most efficient way to make progress in mapping the causative genetic variants, and ultimately improve clinical management of the disease in each patient. Recruitment of consanguineous families is an effective approach to ascertain the genetic forms of many diseases. OBJECTIVES: To apply WGS to large consanguineous families with likely hereditary male infertility and identify potential genetic cases. MATERIALS AND METHODS: We recruited seven large families with clinically diagnosed male infertility from rural Pakistan, including five with a history of consanguinity. We generated WGS data on 26 individuals (3-5 per family) and analyzed the resulting data with a computational pipeline to identify potentially causal single nucleotide variants, indels, and copy number variants. RESULTS: We identified plausible genetic causes in five of the seven families, including a homozygous 10 kb deletion of exon 2 in a well-established male infertility gene (M1AP), and biallelic missense substitutions (SPAG6, CCDC9, TUBA3C) and an in-frame hemizygous deletion (TKTL1) in genes with emerging relevance. DISCUSSION AND CONCLUSION: The rate of genetic findings using the current approach (71%) was much higher than what we recently achieved using whole-exome sequencing (WES) of unrelated singleton cases (20%). Furthermore, we identified a pathogenic single-exon deletion in M1AP that would be undetectable by WES. Screening more families with WGS, especially in underrepresented populations, will further reveal the types of variants underlying male infertility and accelerate the use of genetics in the patient management.
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One of the most practical and environmentally friendly ways to deal with the energy crises and global warming is to produce hydrogen as clean fuel by splitting water. The central obstacle for electrochemical water splitting is the use of expensive metal-based catalysts. For electrocatalytic hydrogen production, it is essential to fabricate an efficient catalyst for the counterpart oxygen evolution reaction (OER), which is a four-electron-transfer sluggish process. Here in this study, we have successfully fabricated cobalt-based ferrite nanoparticles over the surface of carbon nanotube fiber (CNTF) that was utilized as flexible anode materials for the OER and overall electrochemical water splitting reactions. Scanning electron microscopy images with elemental mapping showed the growth of nanoparticles over CNTF, while electrochemical characterization exhibited excellent electrocatalytic performance. Linear sweep voltammetry revealed the reduced overpotential value (260 mV@η10mAcm-2) with a small Tafel slope of 149 mV dec-1. Boosted electrochemical double layer capacitance (0.87 mF cm-2) for the modified electrode also reflects the higher surface area as compared to pristine CNTF (Cdl = 0.022 mF cm-2). Charge transfer resistance for the surface-modified CNTF showed the lower diameter in the Nyquist plot and was consequently associated with the better Faradaic process at the electrode/electrolyte interface. Overall, the as-fabricated electrode could be a promising alternative for the efficient electrochemical water splitting reaction as compared to expensive metal-based electrocatalysts.
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Microbial (bacteria and fungi) community structures and their distributions in urban household municipal solid waste (HMSW) were characterized in a sampling campaign in 38 cities of China covering 5 climatic zones. All samples were collected from garbage containers in residential communities during the Winter of 2022, from January 11 to 26. A total of 247 bacterial genera belonging to 22 phyla were identified among the samples. Firmicutes (44.3 %), Bacteroidetes (33.77 %) and Proteobacteria (21.54 %) were the top 3 dominant phyla, and Arcicella (33.11 %) and Leuconostoc (21.87 %) were the dominant genera. Meanwhile, 124 fungal genera from 7 fungal phyla were detected. Ascomycota was the most dominant phylum, with an average relative abundance of 77.31 %. Hanseniaspora (24.03 %), Debaryomyces (13.47 %), Candida (12.18) were the top 3 dominant fungal genera. Alpha-diversity analysis showed that the species richness and diversity of bacterial and fungal communities of HMSW samples belonging to different climatic zones did not differ significantly. Nonmetric multidimensional scaling (NMDS) analysis confirmed that climatic had an effect on microbial communities but did not show a significant correlation. In addition, the distribution of microbial community in different samples from the same climate zone varied considerably, suggesting the HMSW source play important role in shaping microbial community composition. Considering that residential HMSW is relatively fresh, we speculates that the original microorganisms residing in different components of HMSW are key influencing factor for the community, while the reshaping force driven by environmental conditions are relatively weak. In addition, the study identified 13 bacterial and 16 fungal pathogens with Pseudomonas putida (0.25 %) and Sclerotinia sclerotiorum (2.12 %) as the most abundant potential pathogenic bacteria and fungi, respectively. These findings provide valuable information for characterizing microbial features and potential risks of HMSW in its management system.
Subject(s)
COVID-19 , Solid Waste , Humans , Bacteria , China/epidemiology , Disease OutbreaksABSTRACT
The development of efficient and economical electrocatalysts for oxygen evolution reaction (OER) is of paramount importance for the sustainable production of renewable fuels and energy storage systems; however, the sluggish OER kinetics involving multistep four proton-coupled electron transfer hampers progress in these systems. Fortunately, surface reconstruction offers promising potential to improve OER catalyst design. Anion modulation plays a crucial role in controlling the extent of surface reconstruction and positively persuading the reconstructed species' performances. This review starts by providing a general explanation of how various types of anions can trigger dynamic surface reconstruction and create different combinations with pre-catalysts. Next, the influences of anion modulation on manipulating the surface dynamic reconstruction process are discussed based on the in situ advanced characterization techniques. Furthermore, various effects of survived anionic groups in reconstructed species on water oxidation activity are further discussed. Finally, the challenges and prospects for the future development directions of anion modulation for redirecting dynamic surface reconstruction to construct highly efficient and practical catalysts for water oxidation are proposed.
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Dyes and microbes are the main sources of water pollution and their treatment with titanium doped cobalt ferrite nanoparticles (CoTixFe2-xO4 NPs) is highly challenging due to the recombination ability of their electron-hole pairs which could be mitigated by making their composite with graphene oxide (GO). In the present study, titanium doped cobalt ferrite was fabricated on GO (CoTi0.2Fe1.8O4/GO NC) via the facile ultrasonication method and its confirmation was done by various analytical studies. Homogeneous dispersion of spherical CoTi0.2Fe1.8O4 NPs on the GO surface was realized by SEM analysis. Excellent crystallinity was corroborated by XRD while a Zeta Potential value -21.52 mV depicted exceptional stability. The photocatalytic power of CoTi0.2Fe1.8O/GO NC against Congo Red (CR) dye showed 91% degradation efficiency after 120 min visible light irradiation under optimum conditions of pH 9 and dye concentration 1 mg L-1 which was reasonably higher as compared to bare CoTi0.2Fe1.8O NPs (78% degradation efficiency). The improved photocatalytic performance is accredited to its narrow bandgap value (1.07 eV) and enhanced charge separation as indicated by the Tauc plot and Photoluminescence analysis, respectively. Additionally, CoTi0.2Fe1.8O/GO NC could be readily regenerated and reused five times with only â¼2% performance loss. Meanwhile, MICs of CoTi0.2Fe1.8O4/GO NC against P. aeruginosa and S. aureus were 0.046 and 0.093 mg mL-1 while MBCs were 0.093 and 0.187 mg mL-1, respectively. Thereby, optimized NC can open new avenues for the degradation of dyes from polluted water besides acting as a promising antimicrobial agent by rupturing the cell walls of pathogens.
Subject(s)
Nanocomposites , Titanium , Titanium/radiation effects , Staphylococcus aureus , Anti-Bacterial Agents/pharmacology , Coloring Agents , CatalysisABSTRACT
This work presents a new approach for studying crack growth resulting from fatigue, which utilizes the plastic contribution of crack-tip opening displacement (CTODp). CTODp is used to predict austenitic stainless-steel crack propagation. Unlike linear elastic fracture mechanics analysis, the method presented here is also helpful for tasks other than small-scale yielding. The approach was based on correlating full-field displacement information with post-processing digital images. This work describes a detailed post-processing protocol that can be used to calculate CTODp. The results for steel compact-tension specimens were especially promising. Of note, there was a linear relationship between the propagation rate of fatigue cracks and the CTODp range.
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The development of an effective and selective chemosensor for CN- ions has become the need of the hour due to their hazardous impact on the environment and humans. Herein, we report the synthesis of two novel chemosensors, IF-1 and IF-2 based on 3-hydroxy-2-naphthohydrazide and aldehyde derivatives that have shown selective sensing of CN- ions. IF-2 exhibited exclusive binding with CN- ions that is further confirmed by the binding constant value of 4.77 × 104 M-1 with a low detection limit (8.2 µM). The chemosensory potential is attributed to deprotonation of the labile Schiff base center by CN- ions that results in a color change from colorless to yellow as visible by the naked eye. Accompanying this, a DFT study was also performed in order to find the interaction between the sensor (IF-1) and its ions (F-). A notable charge transfer from 3-hydroxy-2-naphthamide to 2,4-di-tert-butyl-6-methylphenol, was indicated by the FMO analysis. The QTAIM analysis revealed that in the complex compound, the strongest pure hydrogen-hydrogen bonding was observed between H53 and H58, indicated by a ρ value of +0.017807. Due to its selective response, IF-2 can be successfully used for making test strips for the detection of CN- ions.
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Reduced graphene oxide nanosheets decorated with ZnS and ZnS-Ag nanoparticles are successfully prepared via a facile one-step chemical approach consisting of reducing the metal precursors on a rGO surface. Prepared rGO-ZnS nanocomposite is employed as an adsorbent material against two model dyes: malachite green (MG) and ethyl violet (EV). The adsorptive behavior of the nanocomposite was tuned by monitoring some parameters, such as the time of contact between the dye and the adsorbent, and the adsorbent dose. Experimental data were also simulated with kinetic models to evaluate the adsorption behavior, and the results confirmed that the adsorption of both dyes followed a pseudo 2nd order kinetic mode. Moreover, the adsorbent was also regenerated in a suitable media for both dyes (HCl for MG and ethanol for EV), without any significant loss in removal efficiency. Ag doped rGO-ZnS nanocomposite was also utilized as a photocatalyst for the degradation of the selected organic contaminant, resorcinol. The complete degradation of the phenolic compound was achieved after 60 min with 200 mg of rGO-ZnS-Ag nanocomposite under natural sunlight irradiation. The photocatalytic activity was studied considering some parameters, such as the initial phenol concentration, the photocatalyst loading, and the pH of the solution. The degradation kinetics of resorcinol was carefully studied and found to follow a linear Langmuir-Hinshelwood model. An additional advantage of rGO-ZnS and rGO-ZnS-Ag nanocomposites was antibacterial activity against Gram-negative bacterium, E. coli, and the results confirmed the significant performance of the nanocomposites in destroying harmful pathogens.
Subject(s)
Graphite , Metal Nanoparticles , Nanocomposites , Water Purification , Silver/pharmacology , Silver/chemistry , Metal Nanoparticles/chemistry , Adsorption , Escherichia coli , Graphite/pharmacology , Graphite/chemistry , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Phenols , Coloring Agents , Nanocomposites/chemistry , ResorcinolsABSTRACT
In view of the challenges faced by organizations and departments concerned with agricultural capacity observations, we collected In-Situ data consisting of diverse crops (More than 11 consumable vegetation types) in our pilot region of Harichand Charsadda, Khyber Pakhtunkhwa (KP), Pakistan. Our proposed Long Short-Term Memory based Deep Neural network model was trained for land cover land use statistics generation using the acquired ground truth data, for a synergy between Planet-Scope Dove and European Space Agency's Sentinel-2. Total of 4 bands from both sentinel-2 and planet scope including Red, Green, Near-Infrared (NIR) and Normalised Difference Vegetation Index (NDVI) were used for classification purpose. Using short temporal frame of Sentinel-2 comprising 5 date images, we propose an realistic and implementable procedure for generating accurate crop statistics using remote sensing. Our self collected data-set consists of a total number of 107,899 pixels which was further split into 70% and 30% for training and testing purpose of the model respectively. The collected data is in the shape of field parcels, which has been further split for training, validation and test sets, to avoid spatial auto-correlation. To ensure the quality and accuracy 15% of the training data was left out for validation purpose, and 15% for testing. Prediction was also performed on our trained model and visual analysis of the area from the image showed significant results. Further more a comparison between Sentinel-2 time series is performed separately from the fused Planet-Scope and Sentinel-2 time-series data sets. The results achieved shows a weighted average of 93% for Sentinel-2 time series and 97% for fused Planet-Scope and Sentinel-2 time series.
Subject(s)
Crops, Agricultural , Satellite Imagery , Satellite Imagery/methods , Memory, Short-Term , Planets , Neural Networks, ComputerABSTRACT
The peptidylarginine-deiminase 4 (PADI4) is involved in the post-translational catalytic conversion of arginine into citrulline. The autoantibodies including anti-citrullinated protein antibodies (ACPAs) produced in response to hypercitrullinated proteins are a hallmark of rheumatoid arthritis (RA) autoimmunity. Therefore, the role of a missense variant rs874881 (Gly112Ala) of PADI4 in RA susceptibility was analyzed, along with in-silico analysis of structural and functional impacts of this substitution. We did a case-control association study and in-silico analysis. For the case-control study, confirmed RA cases and healthy controls were recruited. Genotyping for rs874881 (n = 750) was performed through polymerase chain reaction-restriction fragment length polymorphism. Multivariate logistic regression analysis was employed to determine association. The in-silico analysis was carried out through HOPE, VarMap, MutationAssessor, MutPred2, SIFT, PolyPhen, CADD, REVEL and MetaLR. In the case-control study, the rs874881 exhibited a strong association with increased RA susceptibility (G vs C odds ratio = 3.85, 95 % confidence interval = 2.81-5.27). Interaction analysis revealed significant interaction of genotype with smoking and gender (p < 0.05). Significant results (p < 0.05) were also obtained in stratified analysis by presence/absence of comorbidities and radiographic damage. According to in-silico pathogenicity prediction analysis, this Gly112Ala substitution does not exert a major effect on protein structure and function including its enzymatic activity. We report a significant association of PADI4 rs874881 with overall RA susceptibility. To our knowledge, this is the first study to do the interaction and stratified analyses on the PADI4 rs874881 in RA. Similar detailed studies should also be performed in other populations.