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1.
Toxicol Res (Camb) ; 12(2): 253-263, 2023 Apr.
Article in English | MEDLINE | ID: mdl-37125338

ABSTRACT

Introduction: Sarin is a highly toxic organophosphorus nerve agent that irreversibly inhibits neuronal enzyme acetylcholinesterase. In the prevailing scenario, it is of paramount importance to develop early diagnosis and medical countermeasures for sarin exposure. A deeper understanding of the molecular mechanism of sarin intoxication and perturbations in the associated cellular processes is likely to provide valuable clues for the elucidation of diagnostic markers and therapeutic targets for sarin exposure. Methods: Present study, uncovered the changes in phosphorylation patterns of multiple proteins in different rat brain regions after sarin intoxication using 2-DE/MS approach. It provided a holistic view of the phosphorylation-mediated changes in the cellular proteome and highlighted various signaling and response pathways affected at an early time point of sarin intoxication. Results: We found total 22 proteins in the cortex, 25 proteins in the corpus striatum, and 17 proteins in the hippocampus, showed ≥1.5 fold changes (hyper- or hypo- phosphorylated) with respect to control, either at 2.5 h or 1 d after sarin exposure. These results indicated the differential expression of phosphoproteins involved in protein folding in the endoplasmic reticulum, carbon metabolism, metabolic function, and energy metabolism. Conclusion: Four candidates (protein disulfide-isomerase A3, heat shock cognate 71 kDa protein, alpha-enolase, and creatine kinase B-type), hyperphosphorylated in all three brain regions, can be further studied to understand the molecular mechanism behind neurodegenerative changes mediated by sarin exposure. The study sheds light on major pathogenic processes initiated during sarin intoxication and provides putative diagnostic markers/therapeutic targets for further validation.

2.
Protein Pept Lett ; 28(9): 1071-1082, 2021.
Article in English | MEDLINE | ID: mdl-33820508

ABSTRACT

BACKGROUND: Some pathogenic bacteria can be potentially used for nefarious applications in the event of bioterrorism or biowarfare. Accurate identification of biological agent from clinical and diverse environmental matrices is of paramount importance for implementation of medical countermeasures and biothreat mitigation. OBJECTIVE: A novel methodology is reported here for the development of a novel enrichment strategy for the generally conserved abundant bacterial proteins for an accurate downstream species identification using tandem MS analysis in biothreat scenario. METHODS: Conserved regions in the common bacterial protein markers were analyzed using bioinformatic tools and stitched for a possible generic immuno-capture for an intended downstream MS/MS analysis. Phylogenetic analysis of selected proteins was carried out and synthetic constructs were generated for the expression of conserved stitched regions of 60 kDa chaperonin GroEL. Hyper-immune serum was raised against recombinant synthetic GroEL protein. RESULTS: The conserved regions of common bacterial proteins were stitched for a possible generic immuno-capture and subsequent specific identification by tandem MS using variable regions of the molecule. Phylogenetic analysis of selected proteins was carried out and synthetic constructs were generated for the expression of conserved stitched regions of GroEL. In a proof-of-concept study, hyper-immune serum raised against recombinant synthetic GroEL protein exhibited reactivity with ~60 KDa proteins from the cell lysates of three bacterial species tested. CONCLUSION: The envisaged methodology can lead to the development of a novel enrichment strategy for the abundant bacterial proteins from complex environmental matrices for the downstream species identification with increased sensitivity and substantially reduce the time-to-result.


Subject(s)
Bacteria , Bacterial Infections , Bacterial Proteins , Chaperonin 60 , Phylogeny , Bacteria/chemistry , Bacteria/genetics , Bacteria/metabolism , Bacterial Infections/genetics , Bacterial Infections/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biomarkers/chemistry , Biomarkers/metabolism , Chaperonin 60/chemistry , Chaperonin 60/genetics , Chaperonin 60/metabolism , Humans
3.
World J Microbiol Biotechnol ; 37(5): 74, 2021 Mar 29.
Article in English | MEDLINE | ID: mdl-33779874

ABSTRACT

Some pathogenic microbes can be used for nefarious applications and instigate population-based fear. In a bio-threat scenario, rapid and accurate methods to detect biological agents in a wide range of complex environmental and clinical matrices, is of paramount importance for the implementation of mitigation protocols and medical countermeasures. This study describes targeted and shot-gun tandem MS based approaches for the verification of biological agents from the environmental samples. The marker proteins and peptides were elucidated by an exhaustive literature mining, in silico analysis of prioritized proteins, and MS/MS analysis of abundant proteins from selected bacterial species. For the shot-gun methodology, tandem MS analysis of abundant peptides was carried from spiked samples. The validation experiments employing a combination of shot-gun tandem MS analysis and a targeted search reported here is a proof of concept to show the applicability of the methodology for the unambiguous verification of biological agents at sub-species level, even with limited fractionation of crude protein extracts from environmental samples.


Subject(s)
Biological Factors/classification , Biological Warfare Agents/classification , Gammaproteobacteria/classification , Peptides/analysis , Proteins/analysis , Tandem Mass Spectrometry/methods , Biological Factors/isolation & purification , Biomarkers , Gammaproteobacteria/isolation & purification , Humans , Peptides/chemistry , Proteins/chemistry , Sensitivity and Specificity , Validation Studies as Topic
4.
Eur J Pharm Sci ; 158: 105651, 2021 Mar 01.
Article in English | MEDLINE | ID: mdl-33238185

ABSTRACT

Tularemia, a zoonosis generally prevalent in the northern half of the globe, is caused by Francisella tularensis. Among various Francisella tularensis species, subspecies tularensis is the most pathogenic to humans causing the infection through an airborne route, abrasions in the skin, and contact with infected animals. At present no approved vaccine exists for this intracellular pathogen. Principal defensive immunity against Francisella is T-cell mediated immunity, hence, picking out significant T-cell antigens is obligatory for Francisella vaccine advancement. In the present study, an immunoproteomics approach was employed to discover T-cell antigens by infecting dendritic cells derived from monocytes with F. tularensis NCTC10857, followed by immunoaffinity isolation of MHC class I molecules and acidic elution of bound peptides. The tandem mass spectrometry technique was used to identify the sequences of the isolated peptides. Ten MHC class I restricting Francisella derived peptides were successfully identified. Top three isolated peptide sequences were modeled and used for in silico docking study to substantiate their interaction and characterize their binding potential. Virtual docking studies further confirmed a high binding affinity for top three peptides with MHC class I molecule. The outcome of this study has led to identification of the probable vaccine candidates for human studies based on T cell-antigens against Francisella.


Subject(s)
Francisella tularensis , Tularemia , Animals , Histocompatibility Antigens Class I , Humans , Mass Spectrometry , Peptides , Tularemia/prevention & control
5.
Anaerobe ; 63: 102209, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32387808

ABSTRACT

Epsilon toxin (ETX), produced by Clostridium perfringens Type B or type D strains, is a potential biological and toxin warfare (BTW) agent, largely for its very high toxicity. The toxin is implicated in several animal diseases. Using LC-MS/MS analysis, we report here elucidation of putative serum maker proteins for ETX exposure with an objective of the early diagnosis of intoxication. Of 166 consensus proteins (488 peptides), showing ETX-induced alterations, 119 proteins exhibited increase and 47 proteins showed decreased abundance in serum, as revealed by SWATH (DIA) acquisition on LC-MS/MS and label free quantitative analysis of control and test samples. Complement and coagulation cascade, nitrogen metabolism, negative regulation of peptidase activity, and response to ROS were among the biological processes and pathways perturbed by the ETX exposure. Interaction network indicated enzyme inhibitor activity, detoxification of ROS, and steroid binding functions were the major interaction networks for the proteins with increased abundance, while, hemostasis and structural molecule activity were the prominent networks for the down-regulated proteins. Validation studies were carried out by immunoprecipitation, ELISA, and Western blot analysis of selected proteins to demonstrate diagnostic potential of the putative marker proteins of ETX exposure.


Subject(s)
Bacterial Toxins , Biomarkers/metabolism , Blood Proteins/metabolism , Clostridium perfringens/metabolism , Animals , Bacterial Toxins/metabolism , Chromatography, Liquid , Disease Models, Animal , Mice , Proteomics/methods , Tandem Mass Spectrometry
6.
Int J Radiat Biol ; 96(7): 879-893, 2020 07.
Article in English | MEDLINE | ID: mdl-32167845

ABSTRACT

Purpose: Gastrointestinal (GI) injuries post ionizing radiation (IR) becomes a crucial factor in survival. Thus, the current study was aimed to explore the molecular mechanisms behind IR produced GI proteome alterations and their amelioration by a safe radioprotective formulation candidate, G-003M (podophyllotoxin+rutin).Materials and method: C57BL/6 mice were administered with G-003M 1 h before 9 Gy whole body γ irradiation. 2DE-MS analysis was conducted to identify differential expression of jejunum proteins with fold change >1.5 (p < .05) at various time-points. Results: G-003M pre-administration decreased total number of differential proteins. It mediated protection to cytoskeleton, modulated stress, apoptosis and inflammatory proteins. Direct effect on eukaryotic translation initiation factor 4H (Eif4h), thioredoxin domain-containing protein 17 (Txndc17) and interferon-induced protein 35 (Ifi35) was observed. Bioinformatics depicted transcription factor-MYC, was also positively modulated by G-003M. Further, it also enhanced level of citrulline (ELISA analysis), and restored crypts and villi lengths (histological analysis) against severe damage caused by lethal irradiation.Conclusion: Current findings reveal that G-003M may be an efficient candidate in protecting key proteins of metabolic and biochemical pathways assisting in the rapid recovery of GI proteome. This fairly improved the chances of animal survival exposed to lethal doses of whole body radiation.


Subject(s)
Jejunum/drug effects , Jejunum/radiation effects , Podophyllotoxin/pharmacology , Proteome/metabolism , Radiation-Protective Agents/pharmacology , Rutin/pharmacology , Animals , Apoptosis/drug effects , Apoptosis/radiation effects , Gamma Rays/adverse effects , Jejunum/cytology , Jejunum/metabolism , Mice , Mice, Inbred C57BL , Whole-Body Irradiation
7.
Sci Rep ; 10(1): 2205, 2020 02 10.
Article in English | MEDLINE | ID: mdl-32042063

ABSTRACT

Some pathogens and toxins have the potential to be used as weapons of mass destruction and instigate population-based fear. Efforts to mitigate biothreat require development of efficient countermeasures which in turn relies on fast and accurate methods to detect the biological agents in a range of complex matrices including environmental and clinical samples. We report here an mass spectrometry (MS) based methodology, employing both targeted and shot-gun approaches for the verification of biological agents from the environmental samples. Our shot-gun methodology relied on tandem MS analysis of abundant peptides from the spiked samples, whereas, the targeted method was based on an extensive elucidation of marker proteins and unique peptides resulting in the generation of an inclusion list of masses reflecting relevant peptides for the unambiguous identification of nine bacterial species [listed as priority agents of bioterrorism by Centre for Disease Control and Prevention (CDC)] belonging to phylogenetically diverse genera. The marker peptides were elucidated by extensive literature mining, in silico analysis, and tandem MS (MS/MS) analysis of abundant proteins of the cultivated bacterial species in our laboratory. A combination of shot-gun MS/MS analysis and the targeted search using a panel of unique peptides is likely to provide unambiguous verification of biological agents at sub-species level, even with limited fractionation of crude protein extracts from environmental samples. The comprehensive list of peptides reflected in the inclusion list, makes a valuable resource for the multiplex analysis of select biothreat agents and further development of targeted MS/MS assays.


Subject(s)
Bacterial Proteins/analysis , Biological Warfare Agents/classification , Bioterrorism/prevention & control , Molecular Typing/methods , Tandem Mass Spectrometry , Biomarkers/analysis , Chromatography, High Pressure Liquid , Computer Simulation , Data Mining , Peptides/analysis
8.
Front Microbiol ; 10: 1822, 2019.
Article in English | MEDLINE | ID: mdl-31507540

ABSTRACT

Crimean-Congo hemorrhagic fever (CCHF) is a re-emerging zoonotic viral disease prevalent in many parts of Asia, Europe, and Africa. The causative agent, Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV), is transmitted through hard ticks. Tick vectors especially belonging to the Hyalomma species serve as the reservoir and amplifying host. The vertebrate animals including sheep, goat, and bovine act as a short-lasting bridge linking the virus and ticks. CCHFV causes fatal hemorrhagic fever in humans. Humans are usually infected with CCHFV either through the bite of infected ticks or by close contact with infected animals. Immunological assays, primarily enzyme-linked immunosorbent assay (ELISA) using whole viral antigen, are widely used for serosurveillance in animals. However, the whole virus antigen poses a high biohazard risk and can only be produced in biosafety level 4 laboratories. The present study focuses on the development and evaluation of safe, sensitive, and specific IgG indirect enzyme-linked immunosorbent assay (iELISA) using recombinant nucleoprotein (NP) of CCHF virus as an antigen. The codon-optimized NP gene sequence was synthesized, cloned, and expressed in pET28a+ vector. The recombinant NP was purified to homogeneity by affinity chromatography and characterized through Western blot and MALDI-TOF/MS analysis. The characterized protein was used to develop an indirect IgG microplate ELISA using a panel of animal sera. The in-house ELISA was comparatively evaluated vis-à-vis a commercially available ELISA kit (Vector-Best, Russia) with 76 suspected samples that revealed a concordance of 90% with a sensitivity and specificity of 79.4 and 100%, respectively. The precision analysis revealed that the assay is robust and reproducible in different sets of conditions. Further, the assay was used for serosurveillance in ruminants from different regions of India that revealed 18% seropositivity in ruminants, indicating continued circulation of virus in the region. The findings suggest that the developed IgG iELISA employing recombinant NP is a safe and valuable tool for scalable high-throughput screening of CCHFV-specific antibodies in multiple species.

9.
Anaerobe ; 59: 76-91, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31145997

ABSTRACT

Epsilon toxin (ETX) is the major virulence determinant of C. perfringens type B or type D strains, causing diseases in animals, besides being a listed biological and toxin warfare (BTW) agent. Keeping in mind the high lethality and the rapid onset of clinical manifestations, early diagnosis of epsilon toxin exposure is of paramount importance for implementation of appropriate medical countermeasures. Using a 2DE-MS approach, the present study is the first comprehensive proteomic elucidation of ETX-induced protein markers in the mouse model, providing putative targets for early diagnosis of ETX exposure. A total of 52 unique proteins showing ETX-induced modulations were identified in plasma and urine samples. Fibrinogen, apolipoprotein, serum amyloid protein, plasminogen, serum albumin, glutathione peroxidase, transferrin, major urinary protein 2, haptoglobin, transthyretin, and vitamin D-binding protein were among the proteins observed in more than one dataset with altered abundance after the ETX-intoxication. The predicted localization, function, and interaction of the ETX-modulated proteins in the plasma and urine indicated involvement of multiple pathways; extracellular proteins, followed by macromolecular complexes associated with blood coagulation and plasminogen activating cascade, being the most prominent among others. The putative markers elucidated here warrants further validation and can be of immense value for the early diagnosis of ETX exposure.


Subject(s)
Bacterial Toxins/toxicity , Biomarkers/blood , Biomarkers/urine , Poisoning/pathology , Proteins/analysis , Animals , Disease Models, Animal , Electrophoresis, Gel, Two-Dimensional , Female , Mass Spectrometry , Mice, Inbred BALB C , Plasma/chemistry , Urine/chemistry
10.
Microb Pathog ; 130: 100-103, 2019 May.
Article in English | MEDLINE | ID: mdl-30844472

ABSTRACT

The epidemiology and prevalence of Q fever in India is largely unknown. There are very few serologic and molecular reports of Q fever in India and these are old reports. The objective of this study was to investigate, for the first time, the presence of Coxiella burnetii infection in sheep and goat flocks of Jammu province of Jammu and Kashmir, India. A total of 148 milk (110 sheep and 38 goats) samples, 282 sera (170 sheep and 112 goats), and 152 vaginal swabs (123 sheep and 29 goats) were collected from farms with incidences of repeated abortion. The LSI Q fever ruminant serum/milk ELISA kit was used to identify anti-C. burnetii antibodies and nested PCR was employed to detect DNA in vaginal swabs. Overall, 42 (38.2%; 95% CI: 29.2-47.9) sheep and 9 (23.7%; 95% CI: 12.0-40.6) goat milk samples, and 21 (12.4%; 95% CI: 8.0-18.5) sheep and 11 (9.8%; 95% CI: 5.2-17.3) goat sera were ELISA positive. In addition, nine (7.3%; 95% CI: 3.6-13.8) vaginal swabs from sheep tested positive by nested PCR; however, C. burnetii could not be found in any of the vaginal swabs from goat. These results indicate that sheep seem to be a more important reservoir of C. burnetii than goats posing a risk for human infection in this area.


Subject(s)
Bacteriological Techniques , Coxiella burnetii/isolation & purification , Goat Diseases/diagnosis , Q Fever/veterinary , Sheep Diseases/diagnosis , Animals , Antibodies, Bacterial/blood , Coxiella burnetii/genetics , Coxiella burnetii/immunology , DNA, Bacterial/analysis , Enzyme-Linked Immunosorbent Assay , Female , Goat Diseases/epidemiology , Goat Diseases/microbiology , Goats , India/epidemiology , Milk/microbiology , Molecular Diagnostic Techniques , Polymerase Chain Reaction , Prevalence , Q Fever/diagnosis , Q Fever/epidemiology , Serologic Tests , Serum/microbiology , Sheep , Sheep Diseases/epidemiology , Sheep Diseases/microbiology , Vagina/microbiology
11.
Chem Biol Interact ; 298: 66-71, 2019 Jan 25.
Article in English | MEDLINE | ID: mdl-30389396

ABSTRACT

Diisopropyl fluorophosphate (DFP), a surrogate of nerve agent sarin, is an organophosphorus (OP) compound which inhibits neuronal enzyme acetylcholinesterase (AChE). Exposure of this compound leads to a wide range of toxic symptoms and survivors may exhibit long term neurotoxicity related to cognitive and memory defects. Due to ease of availability and similar mechanism of action to other highly toxic nerve agent, DFP is widely used as model compound to trace changes associated with nerve agent exposures. Proximal fluids are widely used for the elucidation of biomarkers for exposure to toxic substances and to study the mechanism of toxicity. Using a rat model of OP intoxication, the present study was carried out to elucidate proteomic changes in plasma associated with DFP intoxication. Rats were exposed to a single dose (0.5 LD50) of DFP and their plasma proteome was studied, one day post exposure by two dimensional gel electrophoresis - mass spectrometry (2DE-MS). Some of the milestone changes were validated by Western blot analysis. A total 15 proteins showed significant fold changes in expression with respect to control after 1 day of DFP intoxication. Most of the proteins showing changes in expression at initial stages were related to immunogenic function, acute phase response, blood coagulation, and stress response. Experiments reported here demonstrate that 0.5 LD50 DFP intoxication leads to AChE inhibition, modulation of immunogenic function, and generation of stress at an early stage. Although, some proteins and their putative functional ramifications indicated similarity with those observed in our previous plasma proteome study, neurodegenerative changes were not observed in plasma of 0.5 LD50 DFP treated animals.


Subject(s)
Blood Proteins/analysis , Isoflurophate/toxicity , Nerve Agents/toxicity , Animals , Cholinesterase Inhibitors/administration & dosage , Cholinesterase Inhibitors/toxicity , Cholinesterases/blood , Homeostasis/drug effects , Injections, Subcutaneous , Iron/metabolism , Isoflurophate/administration & dosage , Male , Neurotoxicity Syndromes/etiology , Oxidative Stress/drug effects , Rats, Wistar , Reproducibility of Results , Sarin/toxicity
12.
Toxicol Sci ; 160(1): 136-149, 2017 Nov 01.
Article in English | MEDLINE | ID: mdl-28973502

ABSTRACT

Sarin is an organophosphorus (OP) chemical warfare agent which irreversibly inhibits acetylcholinesterase. Acute toxicity after sarin exposure is because of hyper activation of the nicotinic and muscarinic receptor. Survivors of sarin exposure often develop long-term neuropathology referred as OP ester-induced chronic neurotoxicity. However, the exact mechanism of chronic neurotoxicity is yet unknown. We studied proteomic changes in rat brain regions after 0.5 LD50 dose of sarin and investigated some milestone changes associated with long-term CNS injury. We used two-dimensional gel electrophoresis/mass spectrometry approach to identify early proteomic changes and traced expression of selected proteins for longer time points. This study shows changes in chaperone function, endoplasmic reticulum stress, and defect in cytoskeleton functions at earlier stages. Predictive interaction analysis demonstrated putative role of Parkinson's disease-related proteins after sarin exposure. Our results clearly indicated neurodegenerative changes which started after 2.5 h and showed prominence after 3-month postexposure. The study also unmasks changes in proteins related to movement and cognitive function. The markers for astrocytosis (GFAP) and neurodegenerative changes (alpha-synuclein and amyloid precursor protein) exhibited altered expression in brain. This is the first proteomic study among survivors of sarin exposure in animal model. Some of the early changes, including those involved in neurodegeneration, movement, and cognitive function, defects in chaperone function and cytoskeleton, were shown to persist for a longer period. The study provides a preliminary framework for further validation of major mechanisms of sarin toxicity is suggested here and opens new avenues for elucidation of therapeutic intervention.


Subject(s)
Brain/drug effects , Chemical Warfare Agents/toxicity , Cholinesterase Inhibitors/toxicity , Nerve Tissue Proteins/metabolism , Neurotoxicity Syndromes/etiology , Proteome , Sarin/toxicity , Acetylcholinesterase/metabolism , Animals , Blotting, Western , Brain/metabolism , Brain/pathology , Electrophoresis, Gel, Two-Dimensional , GPI-Linked Proteins/antagonists & inhibitors , GPI-Linked Proteins/metabolism , Lethal Dose 50 , Male , Nerve Degeneration , Neurotoxicity Syndromes/metabolism , Neurotoxicity Syndromes/pathology , Protein Interaction Maps , Proteomics/methods , Rats, Wistar , Reproducibility of Results , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Tandem Mass Spectrometry , Time Factors
13.
Article in English | MEDLINE | ID: mdl-28750864

ABSTRACT

Glanders is a disease of horses, donkeys and mules. The causative agent Burkholderia mallei, is a biorisk group 3 pathogen and is also a biothreat agent. Simple and rapid diagnostic tool is essential for control of glanders. Using a proteomic approach and immunoblotting with equine sera, we identified 12 protein antigens that may have diagnostic potential. Various immunoreactive proteins e.g. GroEL, translation elongation factor Tu, elongation factor Ts, arginine deiminase, malate dehydrogenase, DNA directed RNA polymerase subunit alpha were identified on 2-dimentional immunoblots. One of these proteins, GroEL, was cloned and expressed in E. coli and purified using Ni-NTA affinity chromatography. The recombinant GroEL protein was evaluated in ELISA format on a panel of glanders positive (n=49) and negative (n=79) equine serum samples to determine its diagnostic potential. The developed ELISA had a sensitivity and specificity of 96 and 98.7% respectively. The results of this study highlight the potential of GroEL in serodiagnosis of glanders.


Subject(s)
Antibodies, Bacterial/blood , Antigens, Bacterial/immunology , Burkholderia mallei/immunology , Chaperonin 60/immunology , Glanders/diagnosis , Horse Diseases/diagnosis , Immunoproteins/isolation & purification , Animals , Antigens, Bacterial/blood , Antigens, Bacterial/isolation & purification , Burkholderia mallei/isolation & purification , Chaperonin 60/blood , Chaperonin 60/genetics , Enzyme-Linked Immunosorbent Assay/methods , Escherichia coli/genetics , Glanders/immunology , Horse Diseases/immunology , Horse Diseases/microbiology , Horses , Hydrolases/blood , Hydrolases/immunology , Immunoblotting , Immunoproteins/chemistry , Malate Dehydrogenase/blood , Malate Dehydrogenase/immunology , Peptide Elongation Factor Tu/blood , Peptide Elongation Factor Tu/immunology , Peptide Elongation Factors/blood , Peptide Elongation Factors/immunology , Proteomics/methods , Recombinant Proteins/immunology , Recombinant Proteins/isolation & purification , Sensitivity and Specificity , Serologic Tests
14.
Protein Pept Lett ; 24(8): 771-780, 2017.
Article in English | MEDLINE | ID: mdl-28393685

ABSTRACT

Intestinal botulism is an infectious form of botulism in which disease results from ingesting spores, which is followed by spore germination and intraluminal production of botulinum neurotoxins over an extended period. Botulinum neurotoxin is produced by endospore forming bacteria called C. botulinum. Immunoproteomic study was used to screen the cross reactive immunogenic proteins of Clostridium botulinum type B using C. botulinum type B live spore antiserum. The whole cell proteins were separated by two dimensional gel electrophoresis and transferred to polyvinylidene difluoride membranes. Further, the Western blotting was performed with mouse pups immune serum against C. botulinum type B live spores. Eight predominant cross immunoreactive proteins were identified by mass spectrometry. These immunogenic proteins might be used to develop novel subunit vaccine candidates against the intestinal botulism.


Subject(s)
Bacterial Vaccines/immunology , Blood Proteins/isolation & purification , Botulism/immunology , Clostridium botulinum/immunology , Spores, Bacterial/immunology , Animals , Blood Proteins/immunology , Botulism/blood , Botulism/microbiology , Botulism/prevention & control , Clostridium botulinum/chemistry , Cross Reactions , High-Throughput Screening Assays , Immune Sera/chemistry , Intestines , Mice , Proteomics/methods , Spores, Bacterial/chemistry , Tandem Mass Spectrometry
16.
Anal Chem ; 89(7): 4062-4070, 2017 04 04.
Article in English | MEDLINE | ID: mdl-28263059

ABSTRACT

Some pathogens and toxins have the potential to be used as weapons of mass destruction and instigate population-based fear. Rapid, sensitive, and unambiguous identification of biothreat agents is of paramount importance for confirmation of the event and to mitigate the direct and indirect damages to public health and resources. Although there are several potential dissemination scenarios to describe an attack with a biological weapon, artificially generated bioaerosol is of the greatest concern from a bioterrorism or warfare perspective, potentially capable of causing mass destruction to a civilian or military population by inhalation of toxic bioaerosol. The present investigation proposes methodologies for recovery of biological agent followed by an off-site unambiguous detection using tandem mass spectrometry, in a postattack situation. We envisaged a biothreat scenario wherein the polydispersed bioaerosol is disseminated in bulk over any geographical setting. The larger particles (>5 µm in diameter) of bioaerosol settle and bind to various surfaces depending on the geographical setting. Recovery of agent was optimized from foliage, sand, and glass in a simulated biothreat scenario using bovine serum albumin (BSA). The recovered agents were shown to be amenable to detection by a downstream tandem MS analysis. Applicability of the proposed methodology was demonstrated in validation experiments for the recovery and detection of toxin and bacterial agents. The use of cleaner matrices (foliage, exposed smooth surfaces, sand) is recommended for retrospective verification of agent in a biothreat scenario.


Subject(s)
Biological Factors/analysis , Biological Warfare Agents , Animals , Cattle , Clostridium perfringens/chemistry , Serum Albumin, Bovine/chemistry , Tandem Mass Spectrometry
17.
Curr Microbiol ; 74(4): 499-507, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28233060

ABSTRACT

Francisella tularensis, the causative agent of tularemia, has attained the status of one of the high priority agents that could be used in the act of bioterrorism. Currently, there is no licensed vaccine for this highly infectious intracellular pathogen. Being a listed 'Category A' agent of the U.S. Center for Disease Control and Prevention (CDC), vaccines and therapeutics are immediately required against this pathogen. In this study, an immunoproteomic approach based on the techniques of 2-dimensional gel electrophoresis (2DE) and immunoblotting combined with mass spectrometry (MS) was used for elucidation of immunogenic components and putative vaccine candidates. Whole-cell soluble protein extract of F. tularensis LVS (Ft LVS) was separated by 2DE, and immunoblots were developed with sera raised in rabbit after immunization with heat-killed Ft LVS. A total of 28 immunoreactive proteins were identified by tandem mass spectrometry. Rabbit immunoproteome of F. tularensis was compared with those previously reported using sera from human patients and in murine model. Out of 28 immunoreactive proteins identified in this study, 12 and 17 overlapping proteins were recognized by human and murine sera, respectively. Nine proteins were found immunogenic in all the three hosts, while eight new immunogenic proteins were found in this study. Identified immunoreactive proteins may find application in design and development of protein subunit vaccine for tularemia.


Subject(s)
Antibody Formation/physiology , Bacterial Vaccines/immunology , Francisella tularensis/immunology , Hot Temperature , Immunoproteins/analysis , Animals , Electrophoresis, Gel, Two-Dimensional , Immunoblotting , Proteomics , Rabbits , Tandem Mass Spectrometry
18.
Folia Microbiol (Praha) ; 62(4): 343-353, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28213749

ABSTRACT

Clostridium perfringens is a Validated Biological Agent and a pathogen of medical, veterinary, and military significance. Gas gangrene is the most destructive of all the clostridial diseases and is caused by C. perfringens type A strains wherein the infection spreads quickly (several inches per hour) with production of gas. Influence of repeated in vitro cultivation on the infectivity of C. perfringens was investigated by comparing the surface proteins of laboratory strain and repository strains of the bacterium using 2DE-MS approach. In order to optimize host-pathogen interaction during experimental gas gangrene infection, we also explored the role of particulate matrix on ability of C. perfringens to cause gas gangrene.


Subject(s)
Clostridium perfringens/physiology , Gas Gangrene/microbiology , Animals , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Clostridium perfringens/genetics , Clostridium perfringens/growth & development , Disease Models, Animal , Host-Pathogen Interactions , Humans , Mice , Mice, Inbred BALB C
19.
World J Microbiol Biotechnol ; 32(9): 155, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27465855

ABSTRACT

Functional genomics has made possible advanced structure-to-function investigation of pathogens and helped characterize virulence mechanisms. Proteomics has been become a tool for large-scale identification of proteins involved during invasion and infection by the pathogens. Bacterial surface and secreted proteins play key role in the interaction between the bacterial cell and the host environment. Thus exoproteome and surface proteome of a microorganism are hypothesized to contain components of effective vaccines. Surfome and exoproteome analysis strategy facilitates identification of novel vaccine antigen and overall helps in progress of discovery of vaccine. The study of the antibody response can advance how proteomics is used, because it investigates antibody-antigen interactions and also unravel the relationship of antibody responses to pathogen and host characteristics. System immunology integrating with proteome i.e. immunoproteomics is applicable to those infections that are having tendency of diverse antibody target recognition and thus accurately reflects progression of the infection.


Subject(s)
Bacterial Infections/prevention & control , Bacterial Vaccines/immunology , Drug Discovery/methods , Antigens, Bacterial/immunology , Computational Biology/methods , Humans , Proteomics/methods
20.
Infect Genet Evol ; 44: 147-156, 2016 10.
Article in English | MEDLINE | ID: mdl-27353489

ABSTRACT

The whole genome sequencing and annotation of Clostridium perfringens strains revealed several genes coding for proteins of unknown function with no significant similarities to genes in other organisms. Our previous studies clearly demonstrated that hypothetical proteins CPF_2500, CPF_1441, CPF_0876, CPF_0093, CPF_2002, CPF_2314, CPF_1179, CPF_1132, CPF_2853, CPF_0552, CPF_2032, CPF_0438, CPF_1440, CPF_2918, CPF_0656, and CPF_2364 are genuine proteins of C. perfringens expressed in high abundance. This study explored the putative role of these hypothetical proteins using bioinformatic tools and evaluated their potential as putative candidates for prophylaxis. Apart from a group of eight hypothetical proteins (HPs), a putative function was predicted for the rest of the hypothetical proteins using one or more of the algorithms used. The phylogenetic analysis did not suggest an evidence of a horizontal gene transfer event except for HP CPF_0876. HP CPF_2918 is an abundant extracellular protein, unique to C. perfringens species with maximum strain coverage and did not show any significant match in the database. CPF_2918 was cloned, recombinant protein was purified to near homogeneity, and probing with mouse anti-CPF_2918 serum revealed surface localization of the protein in C. perfringens ATCC13124 cultures. The purified recombinant CPF_2918 protein induced antibody production, a mixed Th1 and Th2 kind of response, and provided partial protection to immunized mice in direct C. perfringens challenge.


Subject(s)
Bacterial Proteins/genetics , Bacterial Proteins/immunology , Clostridium perfringens/pathogenicity , Animals , Bacterial Proteins/metabolism , Cloning, Molecular , Clostridium perfringens/genetics , Disease Models, Animal , Escherichia coli/genetics , Female , Gas Gangrene/immunology , Mice, Inbred BALB C , Phylogeny , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/metabolism
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