Does form meet function in the coronavirus replicative organelle?

If we use the analogy of a virus as a living entity, then the replicative organelle is the part of the body where its metabolic and reproductive activities are concentrated. Recent studies have illuminated the intricately complex replicative organelles of coronaviruses, a group that includes the largest known RNA virus genomes. This review takes a virus-centric look at the coronavirus replication transcription complex organelle in the context of the wider world of positive sense RNA viruses, examining how the mechanisms of protein expression and function act to produce the factories that power the viral replication cycle.

Severe acute respiratory syndrome coronavirus nonstructural proteins 3, 4, and 6 induce double-membrane vesicles.

UNLABELLED: Coronaviruses (CoV), like other positive-stranded RNA viruses, redirect and rearrange host cell membranes for use as part of the viral genome replication and transcription machinery. Specifically, coronaviruses induce the formation of double-membrane vesicles in infected cells. Although these double-membrane vesicles have been well characterized, the mechanism behind their formation remains unclear, including which viral proteins are responsible. Here, we use transfection of plasmid constructs encoding full-length versions of the three transmembrane-containing nonstructural proteins (nsps) of the severe acute respiratory syndrome (SARS) coronavirus to examine the ability of each to induce double-membrane vesicles in tissue culture. nsp3 has membrane disordering and proliferation ability, both in its full-length form and in a C-terminal-truncated form. nsp3 and nsp4 working together have the ability to pair membranes. nsp6 has membrane proliferation ability as well, inducing perinuclear vesicles localized around the microtubule organizing center. Together, nsp3, nsp4, and nsp6 have the ability to induce double-membrane vesicles that are similar to those observed in SARS coronavirus-infected cells. This activity appears to require the full-length form of nsp3 for action, as double-membrane vesicles were not seen in cells coexpressing the C-terminal truncation nsp3 with nsp4 and nsp6. IMPORTANCE: Although the majority of infections caused by coronaviruses in humans are relatively mild, the SARS outbreak of 2002 to 2003 and the emergence of the human coronavirus Middle Eastern respiratory syndrome (MERS-CoV) in 2012 highlight the ability of these viruses to cause severe pathology and fatality. Insight into the molecular biology of how coronaviruses take over the host cell is critical for a full understanding of any known and possible future outbreaks caused by these viruses. Additionally, since membrane rearrangement is a tactic used by all known positive-sense single-stranded RNA viruses, this work adds to that body of knowledge and may prove beneficial in the development of future therapies not only for human coronavirus infections but for other pathogens as well.

LCMV glycosylation modulates viral fitness and cell tropism.

The glycoprotein (GP) of arenaviruses is glycosylated at 11 conserved N-glycosylation sites. We constructed recombinant lymphocytic choriomeningitis virus (rLCMV) featuring either additions or deletions of these N-glycans to investigate their role in the viral life cycle. N-glycosylation at two sites, T87 and S97, were found to be necessary to rescue rLCMV. Three of nine successfully rescued mutants, S116A, T234A, and S373A, under selective pressures in either epithelial, neuronal, or macrophage cells reverted to WT sequence. Of the seven stable N-glycan deletion mutants, five of these led to altered viral fitness and cell tropism, assessed as growth in either mouse primary cortical neurons or bone marrow derived macrophages. These results demonstrate that the deletion of N-glycans in LCMV GP may confer an advantage to the virus for infection of neurons but a disadvantage in macrophages.

Heterogeneous reactions of gaseous HNO3 and NO2 on the clay minerals kaolinite and pyrophyllite.

Airborne clay mineral particles have long atmospheric lifetimes due to their relatively small size. To assess their impact on trace atmospheric gases, we investigated heterogeneous reactions on prototype clay minerals. Diffuse reflectance infrared spectroscopy identified surface-adsorbed products formed from the uptake of gaseous nitric acid and nitrogen dioxide on kaolinite and pyrophyllite. For kaolinite, a 1:1 phyllosilicate, HNO3 molecularly adsorbed onto the octahedral aluminum hydroxide and tetrahedral silicon oxide surfaces. Also detected on the aluminum hydroxide surface were irreversibly adsorbed monodentate, bidentate, bridged, and water-coordinated nitrate species as well as surface-adsorbed water. Similar adsorbed products formed during the uptake of NO2 on kaolinite at relative humidity (RH) of 0%, and the reaction was second order with respect to reactive surface sites and 1.5 +/- 0.1 for NO2. Reactive uptake coefficients, calculated using Brunauer, Emmett, and Teller surface areas, increased from (8.0 +/- 0.2) x 10(-8) to (2.3 +/- 0.4) x 10(-7) for NO2 concentrations ranging from 0.56 x 10(13) to 8.8 x 10(13) molecules cm(-3). UV-visible spectroscopy detected gaseous HONO as a product for the reaction of NO2 on wet kaolinite. The uptake of HNO3 on pyrophyllite, a 2:1 phyllosilicate, resulted in stronger signal for nitric acid molecularly adsorbed on the silicon oxide surface compared to kaolinite. Monodentate, bridged, and water-coordinated nitrate species bound to aluminum sites also formed during this reaction indicating that reactive sites on edge facets are important for this system. The uptake of NO2 on pyrophyllite, gammaBET = (7 +/- 1) x 10(-9), was significantly lower than kaolinite because NO2 did not react with the dominant tetrahedral silicon oxide surface. These results highlight general trends regarding the reactivity of tetrahedral silicon oxide and octahedral aluminum hydroxide clay surfaces and indicate that the heterogeneous chemistry of clay aerosols varies with mineralogy and cannot be predicted by elemental analysis.