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1.
Nat Commun ; 8(1): 1001, 2017 10 17.
Article in English | MEDLINE | ID: mdl-29042554

ABSTRACT

Recently, nanocarriers that transport bioactive substances to a target site in the body have attracted considerable attention and undergone rapid progression in terms of the state of the art. However, few nanocarriers can enter the brain via a systemic route through the blood-brain barrier (BBB) to efficiently reach neurons. Here we prepare a self-assembled supramolecular nanocarrier with a surface featuring properly configured glucose. The BBB crossing and brain accumulation of this nanocarrier are boosted by the rapid glycaemic increase after fasting and by the putative phenomenon of the highly expressed glucose transporter-1 (GLUT1) in brain capillary endothelial cells migrating from the luminal to the abluminal plasma membrane. The precisely controlled glucose density on the surface of the nanocarrier enables the regulation of its distribution within the brain, and thus is successfully optimized to increase the number of nanocarriers accumulating in neurons.There are only a few examples of nanocarriers that can transport bioactive substances across the blood-brain barrier. Here the authors show that by rapid glycaemic increase the accumulation of a glucosylated nanocarrier in the brain can be controlled.


Subject(s)
Blood Glucose/metabolism , Blood-Brain Barrier/metabolism , Brain/metabolism , Drug Carriers/pharmacokinetics , Animals , Brain/blood supply , Drug Carriers/metabolism , Female , Glucose/metabolism , Glucose Transporter Type 1/metabolism , Glycosylation , Humans , Mice, Inbred BALB C , Micelles , Microscopy, Confocal , Nanoparticles/metabolism , Neurons/metabolism , Polymers/chemistry , Polymers/metabolism
2.
Osteoarthritis Cartilage ; 16(8): 961-4, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18262804

ABSTRACT

OBJECTIVE: The aim of this study is to develop a rat model of full-thickness articular cartilage defects that is suitable for detailed molecular analyses of the regenerative repair of cartilage. MATERIALS AND METHODS: The V-shaped full-thickness defects (width: 0.7 mm; depth: 0.8 mm; and length: 4mm) were created in the femoral patellar groove of 6 weeks old male rats using a custom-built twin-blade device. Prior to starting the repair experiments, our device was examined for its accuracy and reliability in generating defects. Then, the time course of the repair response in these cartilage defects was examined using a semi-quantitative histological grading scale. The expression of chondrogenic differentiation markers in the reparative regions was examined with immunohistochemistry and in situ hybridization. RESULTS: Our device creates full-thickness articular cartilage defects uniformly. In these defects, undifferentiated mesenchymal cells filled the defect cavities (4 days) and initiated chondrogenic differentiation at the center of the defect (7 days). Cartilage formation was observed in the same region (2 weeks). Finally, hyaline-like articular cartilage and subchondral bone layers were reconstituted in their appropriate locations (4 weeks). CONCLUSIONS: We have successfully developed a rat model containing identically sized full-thickness defects of articular cartilage that can undergo chondrogenic repair in a reproducible fashion.


Subject(s)
Cartilage, Articular/injuries , Chondrocytes/physiology , Chondrogenesis/physiology , Mesenchymal Stem Cells/physiology , Wound Healing/physiology , Animals , Cartilage, Articular/physiopathology , Cell Differentiation/physiology , Male , Models, Animal , Rats
3.
Article in English | MEDLINE | ID: mdl-11545364

ABSTRACT

Photocatalytic effects of TiO2 powder on marine plankton were examined by the use of either brine shrimp Artemia salina or noxious red tide flagellate Chattonella antiqua as a probe. After UV (365 nm) irradiation for ca. 1 hour, A. salina stopped moving and the body surface was completely covered by TiO2 powder. Similar photoirradiation of C. antiqua, on the other hand, induced deformation of the body from spindle to round shape within 20 minutes. The deformed C. antiqua recovered to normal shapes, when the cells were kept in the same conditions but without UV irradiation for more than 40 minutes. On the prolonged UV irradiation (more than 100 minutes), however, the cells burst and came to annihilation. The photocatalytic reactions of TiO2 on the body surface are thus concluded to induce fatal damages to these microorganisms.


Subject(s)
Congenital Abnormalities/physiopathology , Eukaryota , Photosensitizing Agents/adverse effects , Plankton , Titanium/adverse effects , Animals , Artemia , Catalysis , Environmental Exposure , Movement , Photolysis , Powders/adverse effects , Toxicity Tests , Ultraviolet Rays
4.
Mol Gen Genet ; 263(5): 877-88, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10905355

ABSTRACT

Mutations at several loci affect the sensitivity of the yeast Saccharomyces cerevisiae to staurosporine. We report here the characterization of novel staurosporine- and temperature-sensitive mutants (stt). Cloning and integration mapping showed that the genes STT2/ STT6, STT5, STT7, STT8 and STT9 are allelic to VPS18, ERG10, GPI1, VPS34 and VPS11, respectively. The products of ERG10 and GPI1, respectively, catalyze mevalonate and glycosyl phosphatidylinositol anchor synthesis, while VPS18 and VPS11 genes belong to the class C VPS (Vacuolar Protein Sorting) genes, and the VPS34 gene is classified as a class D VPS. Therefore, staurosporine sensitivity is affected by ergosterol and glycolipid biosynthesis and by vacuolar functions. We found that other vps mutants belonging to classes C and D exhibit staurosporine sensitivity, and that they show calcium sensitivity and fail to grow on glycerol as the sole carbon source; both of the last two characteristics are shared by vacuolar H+-ATPase mutants (vma). As vma mutants were also found to show staurosporine-sensitive growth, staurosporine sensitivity is likely to be affected by acidification of the vacuole. Moreover, wild type yeast cells are more sensitive to staurosporine in alkaline media than in acidic media, suggesting that staurosporine is exported from the cytosol by H+/drug antiporters. Pleiotropic drug resistance (PDR) genes also provide some resistance to staurosporine, because deltapdr5, deltasnq2 and deltayor1 strains are more sensitive to staurosporine than the wild-type strain. This suggests that staurosporine is also exported by the ATP-binding cassette (ABC) transporters on the plasma membrane. vma mutants and vps mutants of classes C and D vps are sensitive to hygromycin B and vanadate, while ABC transporter-depleted mutants do not show such sensitivity, indicating that two systems differ in their ability to protect the cell against different types of drug.


Subject(s)
Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/genetics , Staurosporine/pharmacology , Vacuolar Proton-Translocating ATPases , ATP-Binding Cassette Transporters/genetics , ATP-Binding Cassette Transporters/metabolism , Base Sequence , Biological Transport, Active , Cloning, Molecular , DNA Primers/genetics , Drug Resistance, Microbial/genetics , Genes, Fungal , Mutation , Phenotype , Proton-Translocating ATPases/genetics , Proton-Translocating ATPases/metabolism , Saccharomyces cerevisiae/metabolism , Staurosporine/metabolism , Temperature , Vacuoles/drug effects , Vacuoles/metabolism
5.
Cell Struct Funct ; 25(2): 125-31, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10885582

ABSTRACT

The mating pheromone, alpha-factor, of the yeast Saccharomyces cerevisiae binds to the heterotrimeric G protein-coupled cell surface receptor of MATa cells and induces cellular responses necessary for mating. In higher eukaryotic cells, many hormones and growth factors rapidly mobilize a second messenger, Ca2+, by means of receptor-G protein signaling. Although striking similarities between the mechanisms of the receptor-G protein signaling in yeast and higher eukaryotes have long been known, it is still uncertain whether the pheromone rapidly mobilizes Ca2+ necessary for early events of the pheromone response. Here we reexamine this problem using sensitive methods for detecting Ca2+ fluxes and mobilization, and find no evidence that there is rapid Ca2+ influx leading to a rapid increase in the cytosolic free Ca2+ concentration. In addition, the yeast PLC1 deletion mutant lacking phosphoinositide-specific phospholipase C, a key enzyme for generating Ca2+ signals in higher eukaryotic cells, responds normally to the pheromone. These findings suggest that the receptor-G protein signaling does not utilize Ca2+ as a second messenger in the early stage of the pheromone response pathway. Since the receptor-G protein signaling does stimulate Ca2+ influx after early events have finished and this stimulation is essential for late events in the pheromone response pathway [Iida et al., (1990) J. Biol. Chem., 265: 13391-13399] Ca2+ may be used only once in the signal transduction pathway in unicellular eukaryotes such as yeast.


Subject(s)
Calcium Signaling , Calcium/metabolism , Peptides/metabolism , Receptors, Cell Surface/metabolism , Saccharomyces cerevisiae/physiology , Calcium Signaling/drug effects , Cell Cycle/drug effects , Cell Differentiation , Heterotrimeric GTP-Binding Proteins/metabolism , Mating Factor , Peptides/pharmacology , Plasmids/genetics , Second Messenger Systems , Signal Transduction , Type C Phospholipases/genetics
6.
Clin Orthod Res ; 3(2): 67-77, 2000 May.
Article in English | MEDLINE | ID: mdl-11168287

ABSTRACT

This study evaluates the process of relapse after mandibular setback surgery by an analysis of the role of craniofacial morphology, hyoid position, pharyngeal airway and head posture. Subjects examined were 62 patients who received the sagittal split ramus osteotomies (SSRO). Changes of the craniofacial and related structures were evaluated from the serial cephalograms up to 3 years after the surgery. Results indicated that mandibular relapse represented by Pg occurred mostly within 6 months after the surgery. A net setback of the mandible was 9.1 mm and the superior move was 1.7 mm, with a reduction of 7.2 mm in mandibular length, 4.2 mm in ramus height, 3.7 mm in posterior face height, 2.6 degrees in gonial angle, an increase of 2.9 degrees in mandibular plane angle (MPA) by the last examination. Hyoid bone moved backward and downward and head posture was raised. The forward relapse of Pg was correlated with the changes of ANB, MPA, ramus height and hyoid position. Only hyoid position was predictably correlated with mandibular morphology and head posture. These findings suggest that mandibular setback alters the relationship among the hyoid position, pharyngeal airway and the head posture. It might be critical, therefore, relapse is closely monitored and controlled before the full healing of fragments and new muscular balance is established.

7.
Clin Orthod Res ; 3(3): 67-77, 2000 May.
Article in English | MEDLINE | ID: mdl-11553068

ABSTRACT

This study evaluates the process of relapse after mandibular setback surgery by an analysis of the role of craniofacial morphology, hyoid position, pharyngeal airway and head posture. Subjects examined were 62 patients who received the sagittal split ramus osteotomies (SSRO). Changes of the craniofacial and related structures were evaluated from the serial cephalograms up to 3 years after the surgery. Results indicated that mandibular relapse represented by Pg occurred mostly within 6 months after the surgery. A net setback of the mandible was 9.1 mm and the superior move was 1.7 mm, with a reduction of 7.2 mm in mandibular length, 4.2 mm in ramus height, 3.7 mm in posterior face height, 2.6 degrees in gonial angle, an increase of 2.9 degrees in mandibular plane angle (MPA) by the last examination. Hyoid bone moved backward and downward and head posture was raised. The forward relapse of Pg was correlated with the changes of ANB, MPA, ramus height and hyoid position. Only hyoid position was predictably correlated with mandibular morphology and head posture. These findings suggest that mandibular setback alters the relationship among the hyoid position, pharyngeal airway and the head posture. It might be critical, therefore, relapse is closely monitored and controlled before the full healing of fragments and new muscular balance is established.

8.
J Biol Chem ; 274(49): 34903-10, 1999 Dec 03.
Article in English | MEDLINE | ID: mdl-10574964

ABSTRACT

A method for obtaining giant protoplasts of Escherichia coli (the spheroplast incubation (SI) method: Kuroda et al. (Kuroda, T., Okuda, N., Saitoh, N., Hiyama, T., Terasaki, Y., Anazawa, H., Hirata, A., Mogi, T., Kusaka, I., Tsuchiya, T., and Yabe, I. (1998) J. Biol. Chem. 273, 16897-16904) was adapted to haploid cells of Saccharomyces cerevisiae. The yeast cell grew to become as large as 20 micrometer in diameter and to contain an oversized vacuole inside. A patch clamp technique in the whole cell/vacuole recording mode was applied for the vacuole isolated by osmotic shock. At zero membrane potential, ATP induced a strong current (as high as 100 pA; specific activity, 0.1 pA/micrometer(2)) toward the inside of the vacuole. Bafilomycin A(1,) a specific inhibitor of the V-type ATPase, strongly inhibited the activity (K(i) = 10 nM). Complete inhibition at higher concentrations indicated that any other ATP-driven transport systems were not expressed under the present incubation conditions. This current was not observed in the vacuoles prepared from a mutant that disrupted a catalytic subunit of the V-type ATPase (RH105(Deltavma1::TRP)). The K(m) value for the ATP dose response of the current was 159 microM and the H(+)/ATP ratio estimated from the reversible potential of the V-I curve was 3.5 +/- 0.3. These values agreed well with those previously estimated by measuring the V-type ATPase activity biochemically. This method can potentially be applied to any type of ion channel, ion pump, and ion transporter in S. cerevisiae, and can also be used to investigate gene functions in various organisms by using yeast cells as hosts for homologous and heterogeneous expression systems.


Subject(s)
Giant Cells/enzymology , Intracellular Membranes/enzymology , Macrolides , Proton-Translocating ATPases/metabolism , Saccharomyces cerevisiae/enzymology , Vacuolar Proton-Translocating ATPases , Vacuoles/enzymology , Anti-Bacterial Agents/pharmacology , Antimetabolites/metabolism , Deoxyglucose/metabolism , Dose-Response Relationship, Drug , Enzyme Inhibitors/pharmacology , Giant Cells/cytology , Giant Cells/ultrastructure , Haploidy , Hydrogen-Ion Concentration , In Vitro Techniques , Ions , Kinetics , Membrane Potentials/drug effects , Microscopy, Electron , Microscopy, Fluorescence , Patch-Clamp Techniques , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae/ultrastructure , Time Factors
9.
Yeast ; 15(6): 497-505, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10234787

ABSTRACT

The Saccharomyces cerevisiae STT3 (ScSTT3) gene encodes a protein which is involved in protein glycosylation via the regulation of oligosaccharyltransferase activity. We have cloned and isolated the Schizosaccharomyces pombe STT3 homologous gene (Spstt3+). The Spstt3+ gene encodes a protein consisting of 749 amino acid residues which has significant homology with ScStt3p and the mouse Stt3p-homologue Itm1p. Disruption of the Spstt3+ gene shows that this gene is essential for growth. Like Itm1, Spstt3+ partially suppressed the temperature sensitivity of the stt3-1 mutation of S. cerevisiae, indicating that Spstt3+ is a functional and structural homologue of the ScSTT3 gene.


Subject(s)
Gene Expression Regulation, Fungal , Hexosyltransferases , Membrane Proteins/genetics , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/genetics , Schizosaccharomyces/genetics , Transferases/metabolism , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , Conserved Sequence/genetics , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Gene Deletion , Genes, Essential/genetics , Genetic Complementation Test , Glycosylation , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Mice , Molecular Sequence Data , Mutagenesis, Insertional , Polymerase Chain Reaction , Saccharomyces cerevisiae/enzymology , Schizosaccharomyces/enzymology , Schizosaccharomyces/growth & development , Sequence Alignment , Temperature , Transferases/genetics
10.
Nucleic Acids Symp Ser ; (42): 197-8, 1999.
Article in English | MEDLINE | ID: mdl-10780447

ABSTRACT

DNA endonuclease derived from the yeast VMA1-gene product recognizes and cleaves 31 base-pairs of double-stranded DNA (dsDNA). Mixtures of the endonuclease (VDE) with a full DNA substrate consisting of 34 base-pairs, with nicked substrates each having a nick in either DNA chain, and with cleaved substrates each having a cleaved-off chain are prepared. Molecular weights (MWs) of eluted peaks from gel filtration columns were estimated from elution profiles in the presence of Mg2+ ions. Each mixture exhibited an elute peak at about 63k MW, larger than the MW of VDE unbound to dsDNA. This indicates that VDE and dsDNA substrates form stable complexes. The mixture of VDE either with the full substrate or with the nicked substrate having a nick in the anti-sense chain eluted an additional 25k-MW peak, which presumably corresponds to a cleaved product. The complex of VDE with the full substrate was eluted at 62k-MW location in the absence of Mg2+ ions and yielded a single crystal. Stable complexes of VDE either with the dsDNA substrates or with the cleaved products are obtainable.


Subject(s)
DNA/metabolism , Endodeoxyribonucleases/metabolism , Oligodeoxyribonucleotides/metabolism , Proton-Translocating ATPases , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/enzymology , Base Sequence , Chromatography, Gel , Cloning, Molecular , DNA/chemistry , DNA/isolation & purification , Endodeoxyribonucleases/chemistry , Escherichia coli , Magnesium/pharmacology , Molecular Weight , Oligodeoxyribonucleotides/chemistry , Recombinant Proteins/metabolism
11.
Biochemistry ; 37(37): 12744-52, 1998 Sep 15.
Article in English | MEDLINE | ID: mdl-9737851

ABSTRACT

Cytochrome bo is a member of the heme-copper terminal oxidase superfamily and serves as a four-subunit ubiquinol oxidase in the aerobic respiratory chain of Escherichia coli. To probe the location and structural properties of the ubiquinol oxidation site, we isolated and characterized five or 10 spontaneous mutants resistant to either 2,6-dimethyl-1,4-benzoquinone, 2,6-dichloro-4-nitrophenol, or 2,6-dichloro-4-dicyanovinylphenol, the potent competitive inhibitors for the oxidation of ubiquinol-1 [Sato-Watanabe, M., Mogi, T., Miyoshi, H., Iwamura, H., Matsushita, K., Adachi, O., and Anraku, Y. (1994) J. Biol. Chem. 269, 28899-28907]. Analyses of the growth yields and the ubiquinol-1 oxidase activities of the mutant membranes showed that the mutations increased the degree of the resistance to the selecting compounds. Notably, several mutants showed the cross-resistance. These data indicate that the binding sites for substrate and the competitive inhibitors are partially overlapped in the ubiquinol oxidation site. All the mutations were linked to the expression vector, and 23 mutations examined were all present in the C-terminal hydrophilic domain (Pro96-His315) of subunit II. Sequencing analysis revealed that seven mutations examined are localized near both ends of the cupredoxin fold. Met248Ile, Ser258Asn, Phe281Ser, and His284Pro are present in a quinol oxidase-specific (Qox) domain and proximal to low-spin heme b in subunit I and the lost CuA site in subunit II, whereas Ile129Thr, Asn198Thr, and Gln233His are rather scattered in a three-dimensional structure and closer to transmembrane helices of subunit II. Our data suggest that the Qox domain and the CuA end of the cupredoxin fold provide the quinol oxidation site and are involved in electron transfer to the metal centers in subunit I.


Subject(s)
Benzoquinones/pharmacology , Electron Transport Complex IV/genetics , Electron Transport Complex IV/isolation & purification , Escherichia coli/enzymology , Escherichia coli/genetics , Point Mutation , Amino Acid Sequence , Cell Membrane/enzymology , Cell Membrane/genetics , Drug Resistance, Microbial , Electron Transport Complex IV/chemistry , Escherichia coli/drug effects , Escherichia coli/growth & development , Escherichia coli/isolation & purification , Models, Molecular , Molecular Sequence Data , Nitrophenols/pharmacology , Phenols/pharmacology , Pyridines/pharmacology
12.
J Biol Chem ; 273(25): 15779-86, 1998 Jun 19.
Article in English | MEDLINE | ID: mdl-9624177

ABSTRACT

Phosphatidylinositol 4,5-biphosphate (PtdIns(4,5)P2), an important element in eukaryotic signal transduction, is synthesized either by phosphatidylinositol-4-phosphate 5-kinase (PtdIns(4)P 5K) from phosphatidylinositol 4-phosphate (PtdIns(4)P) or by phosphatidylinositol-5-phosphate 4-kinase (PtdIns(5)P 4K) from phosphatidylinositol 5-phosphate (PtdIns(5)P). Two Saccharomyces cerevisiae genes, MSS4 and FAB1, are homologous to mammalian PtdIns(4)P 5Ks and PtdIns(5)P 4Ks. We show here that MSS4 is a functional homolog of mammalian PtdIns(4)P 5K but not of PtdIns(5)P 4K in vivo. We constructed a hemagglutinin epitope-tagged form of Mss4p and found that Mss4p has PtdIns(4)P 5K activity. Immunofluorescent and fractionation studies of the epitope-tagged Mss4p suggest that Mss4p is localized on the plasma membrane, whereas Fab1p is reportedly localized on the vacuolar membrane. A temperature-sensitive mss4-1 mutant was isolated, and its phenotypes at restrictive temperatures were found to include increased cell size, round shape, random distribution of actin patches, and delocalized staining of cell wall chitin. Thus, biochemical and genetic analyses on Mss4p indicated that yeast PtdIns(4)P 5K localized on the plasma membrane is required for actin organization.


Subject(s)
Cell Membrane/enzymology , Fungal Proteins/physiology , Phosphotransferases (Alcohol Group Acceptor)/physiology , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/growth & development , Actins/metabolism , Animals , Fungal Proteins/genetics , Mice , Morphogenesis , Phosphotransferases (Alcohol Group Acceptor)/genetics , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Temperature
13.
Biochemistry ; 37(16): 5356-61, 1998 Apr 21.
Article in English | MEDLINE | ID: mdl-9548917

ABSTRACT

Cytochrome bo is a four-subunit terminal ubiquinol oxidase in the aerobic respiratory chain of Escherichia coli that vectorially translocates protons not only via directed protolytic reactions but also via proton pumping. Previously, we postulated that a bound quinone in the high-affinity quinone binding site (QH) mediates electron transfer from the low-affinity quinol oxidation site (QL) in subunit II to low-spin heme b in subunit I as an electron gate and a transient electron reservoir [Sato-Watanabe, M., Mogi, T., Ogura, T., Kitagawa, T., Miyoshi, H., Iwamura, H., and Anraku, Y. (1994b) J. Biol. Chem. 269, 28908-28912]. In the present study, we carried out screening of ubiquinone analogues using a bound ubiquinone-free enzyme (DeltaUbiA1) that has been isolated from a ubiquinone biosynthesis mutant, and identified PC24 (2-chloro-4, 6-dinitrophenol), PC32 (2,6-dibromo-4-cyanophenol), and PC52 (2-isopropyl-5-methyl-4,6-dinitrophenol) as potent QH site inhibitors. PC15 (2,6-dichloro-4-nitrophenol) and PC16 (2, 6-dichloro-4-dicyanovinylphenol), potent QL site inhibitors, did not exhibit such a selective inhibition of the QH site. Binding studies using the air-oxidized DeltaUbiA enzyme showed that PC32 and PC52 have 4- to 7-fold higher affinity than ubiquinone-1. Reconstitution of the QH site with PC32 and PC52 resulted in a decrease of the apparent Vmax value to 1/7 and 1/3, respectively, of the control activity. These findings suggest that structural features of the QL and QH sites are different, and provide further support for the involvement of the QH site in intramolecular electron transfer and facile oxidation of quinols at the QL site.


Subject(s)
Benzoquinones/metabolism , Electron Transport Complex IV/chemistry , Electron Transport Complex IV/metabolism , Escherichia coli/enzymology , Binding Sites , Electron Transport Complex IV/antagonists & inhibitors , Electron Transport Complex IV/genetics , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Escherichia coli/genetics , Mutagenesis, Site-Directed , Phenols/metabolism , Spectrophotometry , Structure-Activity Relationship
14.
Biochemistry ; 37(6): 1632-9, 1998 Feb 10.
Article in English | MEDLINE | ID: mdl-9484234

ABSTRACT

Cytochrome bo is a four-subunit quinol oxidase in the aerobic respiratory chain of Escherichia coli and functions as a redox-coupled proton pump. Subunit I binds all the redox metal centers, low-spin heme b, high-spin heme o, and CuB, whose axial ligands have been identified to be six invariant histidines. This work explored the possible roles of the aromatic amino acid residues conserved in the putative transmembrane helices (or at the boundary of the membrane) of subunit I. Sixteen aromatic amino acid residues were individually substituted by Leu, except for Tyr61 and Trp282 by Phe and Phe415 by Trp. Leu substitutions of Trp280 and Tyr288 in helix VI, Trp331 in loop VII-VIII, and Phe348 in helix VIII reduced the catalytic activity, whereas all other mutations did not affect the in vivo activity. Spectroscopic analyses of the purified mutant enzymes revealed that the defects were attributable to perturbations of the binuclear center. On the basis of these findings and recent crystallographic studies on cytochrome c oxidases, we discuss the possible roles of the conserved aromatic amino acid residues in subunit I of the heme-copper terminal oxidases.


Subject(s)
Amino Acid Substitution/genetics , Amino Acids, Cyclic/genetics , Copper/metabolism , Electron Transport Complex IV/genetics , Escherichia coli/enzymology , Heme/metabolism , Amino Acid Sequence , Catalysis , Conserved Sequence , Cyanides/metabolism , Electron Spin Resonance Spectroscopy , Electron Transport Complex IV/metabolism , Escherichia coli/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Oxidation-Reduction , Protein Binding/genetics , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , Spectrum Analysis, Raman
16.
Genetics ; 147(1): 73-85, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9286669

ABSTRACT

Protein splicing is a compelling chemical reaction in which two proteins are produced posttranslationally from a single precursor polypeptide by excision of the internal protein segment and ligation of the flanking regions. This unique autocatalytic reaction was first discovered in the yeast Vma1p protozyme where the 50-kD site-specific endonuclease (VDE) is excised from the 120-kD precursor containing the N- and G-terminal regions of the catalytic subunit of the vacuolar H(+)-ATPase. In this work, we randomized the conserved valine triplet residues three amino acids upstream of the C-terminal splicing junction in the Vma1 protozyme and found that these site-specific random mutations interfere with normal protein splicing to different extents. Intragenic suppressor analysis has revealed that this particular hydrophobic triplet preceding the C-terminal splicing junction genetically interacts with three hydrophobic residues preceding the N-terminal splicing junction. This is the first evidence showing that the N-terminal portion of the V-ATPase subunit is involved in protein splicing. Our genetic evidence is consistent with a structural model that correctly aligns two parallel beta-strands ascribed to the triplets. This model delineates spatial interactions between the two conserved regions both residing upstream of the splicing junctions.


Subject(s)
Endodeoxyribonucleases/genetics , Protein Splicing/genetics , Proton-Translocating ATPases , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/genetics , Amino Acid Sequence , Isoleucine/physiology , Mutagenesis , Sequence Alignment , Suppression, Genetic , Tyrosine/physiology , Valine/physiology
17.
FEBS Lett ; 412(3): 518-20, 1997 Aug 04.
Article in English | MEDLINE | ID: mdl-9276458

ABSTRACT

Protein splicing is an autocatalytic reaction of a single polypeptide in which a spliced intervening sequence is excised out and the two external regions are ligated with the peptide bond to yield two mature proteins. We examined the reaction mechanism using a folding-dependent in vitro protein splicing system. Protein splicing proceeds at an optimal pH of 7 and is an intramolecular reaction. The reaction is not inhibited by potential protease inhibitors, suggesting that its mechanism is different from those catalyzed by known proteases.


Subject(s)
Endodeoxyribonucleases/chemistry , Endodeoxyribonucleases/metabolism , Protein Splicing , Proton-Translocating ATPases , Saccharomyces cerevisiae Proteins , Catalysis , Endodeoxyribonucleases/genetics , Protease Inhibitors/metabolism , Protease Inhibitors/pharmacology , Protein Folding , Protein Precursors/chemistry , Protein Precursors/genetics , Protein Precursors/metabolism , Protein Splicing/drug effects , Saccharomyces cerevisiae , Substrate Specificity
18.
J Biochem ; 122(2): 415-21, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9378722

ABSTRACT

Cytochrome bo from Escherichia coli belongs to the heme-copper terminal oxidase superfamily and functions as a redox-driven proton pump. In the present study, we examined the functional roles of the cyoABCDE genes, which encode cytochrome bo. We expressed the cyoABCDE genes in minicells using pTTQ18 derivatives and identified subunits II, I, III, and IV of the oxidase complex and heme O synthase as polypeptides with molecular weights of 33,500, 75,000, 20,500, 12,000, and 28,000, respectively. The expression level of heme O synthase (CyoE) was much lower than those of the oxidase subunits and seems to be controlled just tightly enough for the incorporation of heme O into the oxidase complex. To facilitate functional analysis of the gene products, we developed a single copy expression vector pHNF2, a derivative of the F-sex factor. Genetic complementation tests showed that deletions in each gene resulted in nonfunctional enzymes. Western blotting analysis indicated that the expression levels of subunits I and II were not affected by the deletions in the other cyo gene products. However, spectroscopic analyses of the mutant membranes revealed that all the deletions perturbed or eliminated the redox metal centers in subunit I. Present findings suggest that subunits II, III, and IV of the oxidase complex are required for the assembly of the metal centers in subunit I.


Subject(s)
Cytochrome b Group , Cytochromes/genetics , Escherichia coli Proteins , Escherichia coli/genetics , Genes, Bacterial/physiology , Alkyl and Aryl Transferases/chemistry , Alkyl and Aryl Transferases/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Binding Sites , Cell Membrane/enzymology , Cytochromes/biosynthesis , Cytochromes/chemistry , Cytochromes/metabolism , Escherichia coli/enzymology , Genetic Complementation Test , Genetic Vectors/genetics , Metals , Molecular Weight , Operon/genetics , Oxidation-Reduction , Sequence Deletion
19.
J Biochem ; 122(2): 422-9, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9378723

ABSTRACT

Cytochrome bo is a four-subunit quinol oxidase in the aerobic respiratory chain of Escherichia coli and functions as a redox-coupled proton pump. Subunit I binds all the redox metal centers, low-spin heme b, high-spin heme o, and Cu(B), and serves as a reaction center of the oxidase complex. This work focuses on the functional and structural roles of 14 charged amino acid residues that are conserved in subunit I of the heme-copper terminal oxidases. Substitutions of Lys55, Tyr173, Asp188, Asp256, Arg481, and Arg482 by neutral amino acid residues did not affect the catalytic activity and spectroscopic properties of the cytoplasmic membranes. In contrast, genetic complementation tests indicated that replacements of Arg80, Asp135, Arg257, Glu286, Tyr288, Lys362, Asp407, and Glu540 resulted in nonfunctional enzymes. The R80Q mutation caused loss of a diagnostic peak for low-spin heme b in the 77 K redox difference spectrum. The K362Q, D407N, and E540Q mutations affected the CO-binding by the heme-copper binuclear center. The D135N, R257Q, E286Q, and Y288F mutations specifically eliminated the Cu(B) center from the oxidase complex, whereas the E286D mutant did not show significant perturbations on the redox metal centers even though it was still inactive. Based on these findings and recent crystallographic studies on cytochrome c oxidases, we discuss the possible roles of the conserved charged amino acid residues in subunit I of the heme-copper terminal oxidases.


Subject(s)
Amino Acids/physiology , Copper/analysis , Cytochrome b Group , Cytochromes/chemistry , Escherichia coli Proteins , Escherichia coli/enzymology , Heme/analysis , Amino Acid Sequence , Cell Membrane/enzymology , Conserved Sequence , Cytochromes/genetics , Cytochromes/metabolism , Genes, Bacterial/genetics , Genetic Complementation Test , Molecular Sequence Data , Mutagenesis, Site-Directed , Operon/genetics , Oxidation-Reduction , Protein Structure, Secondary
20.
J Biochem ; 122(2): 430-7, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9378724

ABSTRACT

Cytochrome bo-type ubiquinol oxidase in Escherichia coli belongs to a superfamily of the heme-copper respiratory oxidases and catalyzes the redox-coupled proton pumping. Previous studies [Y. Orii, T. Mogi, M. Sato-Watanabe, T. Hirano, and Y. Anraku (1995) Biochemistry 34, 1127-1132] suggest that it requires chloride ions for the facilitated heme b-to-heme o intramolecular electron transfer. To extend our previous studies on chloride binding by bo-type ubiquinol oxidase, we prepared two kinds of chloride-bound enzymes, UQO-412 and UQO-409, and a chloride-depleted enzyme, UQO-407, and examined their spectroscopic and enzymatic properties. UQO-412, which exhibits the Soret peak at 412 nm in the air-oxidized state, was obtained by purification with anion-exchange liquid chromatography, and UQO-409 was derived from UQO-412 by extensive washing and showed a 3-nm blue shift. UQO-407 was obtained from UQO-409 by omitting chloride ions from buffers throughout purification and showed a further blue shift in the Soret peak and the pronounced chloride-sensitive EPR signals at g=6 and g=3.15, which are attributable to spin-spin exchange interaction at the binuclear center. Kinetic studies on chloride binding by UQO-407 revealed the presence of a chloride-binding site with a K(d) value of 3.5 mM. Flow-flash experiments demonstrated that the heme b-to-heme o electron transfer was perturbed in both UQO-409 and UQO-407, although steady state enzyme activities of three UQOs were indistinguishable. The present studies demonstrated that the E. coli bo-type ubiquinol oxidase is endowed with a novel chloride-binding site which controls the electromagnetic state of the heme-copper binuclear center. Further, we suggest that the intramolecular electron transfer in the enzyme requires diffusible molecules other than the bound chloride ion.


Subject(s)
Chlorides/chemistry , Copper/analysis , Cytochrome b Group , Cytochromes/chemistry , Escherichia coli Proteins , Escherichia coli/enzymology , Heme/analysis , Binding Sites , Electromagnetic Phenomena , Electron Spin Resonance Spectroscopy , Kinetics , Oxygen , Sodium Compounds/pharmacology
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