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1.
Proc Natl Acad Sci U S A ; 121(22): e2316818121, 2024 May 28.
Article in English | MEDLINE | ID: mdl-38768360

ABSTRACT

In mammals, offspring vocalizations typically encode information about identity and body condition, allowing parents to limit alloparenting and adjust care. But how do these vocalizations mediate parental behavior in species faced with the problem of rearing not one, but multiple offspring, such as domestic dogs? Comprehensive acoustic analyses of 4,400 whines recorded from 220 Beagle puppies in 40 litters revealed litter and individual (within litter) differences in call acoustic structure. By then playing resynthesized whines to mothers, we showed that they provided more care to their litters, and were more likely to carry the emitting loudspeaker to the nest, in response to whine variants derived from their own puppies than from strangers. Importantly, care provisioning was attenuated by experimentally moving the fundamental frequency (fo, perceived as pitch) of their own puppies' whines outside their litter-specific range. Within most litters, we found a negative relationship between puppies' whine fo and body weight. Consistent with this, playbacks showed that maternal care was stronger in response to high-pitched whine variants simulating relatively small offspring within their own litter's range compared to lower-pitched variants simulating larger offspring. We thus show that maternal care in a litter-rearing species relies on a dual assessment of offspring identity and condition, largely based on level-specific inter- and intra-litter variation in offspring call fo. This dual encoding system highlights how, even in a long-domesticated species, vocalizations reflect selective pressures to meet species-specific needs. Comparative work should now investigate whether similar communication systems have convergently evolved in other litter-rearing species.


Subject(s)
Maternal Behavior , Vocalization, Animal , Animals , Dogs , Maternal Behavior/physiology , Vocalization, Animal/physiology , Female , Body Weight
2.
PLoS Comput Biol ; 19(4): e1010325, 2023 04.
Article in English | MEDLINE | ID: mdl-37053268

ABSTRACT

Despite the accumulation of data and studies, deciphering animal vocal communication remains challenging. In most cases, researchers must deal with the sparse recordings composing Small, Unbalanced, Noisy, but Genuine (SUNG) datasets. SUNG datasets are characterized by a limited number of recordings, most often noisy, and unbalanced in number between the individuals or categories of vocalizations. SUNG datasets therefore offer a valuable but inevitably distorted vision of communication systems. Adopting the best practices in their analysis is essential to effectively extract the available information and draw reliable conclusions. Here we show that the most recent advances in machine learning applied to a SUNG dataset succeed in unraveling the complex vocal repertoire of the bonobo, and we propose a workflow that can be effective with other animal species. We implement acoustic parameterization in three feature spaces and run a Supervised Uniform Manifold Approximation and Projection (S-UMAP) to evaluate how call types and individual signatures cluster in the bonobo acoustic space. We then implement three classification algorithms (Support Vector Machine, xgboost, neural networks) and their combination to explore the structure and variability of bonobo calls, as well as the robustness of the individual signature they encode. We underscore how classification performance is affected by the feature set and identify the most informative features. In addition, we highlight the need to address data leakage in the evaluation of classification performance to avoid misleading interpretations. Our results lead to identifying several practical approaches that are generalizable to any other animal communication system. To improve the reliability and replicability of vocal communication studies with SUNG datasets, we thus recommend: i) comparing several acoustic parameterizations; ii) visualizing the dataset with supervised UMAP to examine the species acoustic space; iii) adopting Support Vector Machines as the baseline classification approach; iv) explicitly evaluating data leakage and possibly implementing a mitigation strategy.


Subject(s)
Algorithms , Pan paniscus , Animals , Workflow , Reproducibility of Results , Neural Networks, Computer
3.
PLoS One ; 13(12): e0208874, 2018.
Article in English | MEDLINE | ID: mdl-30576331

ABSTRACT

Classically, in the bouba-kiki association task, a subject is asked to find the best association between one of two shapes-a round one and a spiky one-and one of two pseudowords-bouba and kiki. Numerous studies report that spiky shapes are associated with kiki, and round shapes with bouba. This task is likely the most prevalent in the study of non-conventional relationships between linguistic forms and meanings, also known as sound symbolism. However, associative tasks are explicit in the sense that they highlight phonetic and visual contrasts and require subjects to establish a crossmodal link between stimuli of different natures. Additionally, recent studies have raised the question whether visual resemblances between the target shapes and the letters explain the pattern of association, at least in literate subjects. In this paper, we report a more implicit testing paradigm of the bouba-kiki effect with the use of a lexical decision task with character strings presented in round or spiky frames. Pseudowords and words are, furthermore, displayed with either an angular or a curvy font to investigate possible graphemic bias. Innovative analyses of response times are performed with GAMLSS models, which offer a large range of possible distributions of error terms, and a generalized Gama distribution is found to be the most appropriate. No sound symbolic effect appears to be significant, but an interaction effect is in particular observed between spiky shapes and angular letters leading to faster response times. We discuss these results with respect to the visual saliency of angular shapes, priming, brain activation, synaesthesia and ideasthesia.


Subject(s)
Language , Models, Biological , Pattern Recognition, Visual/physiology , Speech Perception/physiology , Adolescent , Adult , Female , Humans , Male , Phonetics
4.
Anesthesiology ; 122(2): 343-52, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25296107

ABSTRACT

BACKGROUND: Propofol is a short-acting intravenous anesthetic agent. In rare conditions, a life-threatening complication known as propofol infusion syndrome can occur. The pathophysiologic mechanism is still unknown. Some studies suggested that propofol acts as uncoupling agent, others suggested that it inhibits complex I or complex IV, or causes increased oxidation of cytochrome c and cytochrome aa3, or inhibits mitochondrial fatty acid metabolism. Although the exact site of interaction is not known, most hypotheses point to the direction of the mitochondria. METHODS: Eight rats were ventilated and sedated with propofol up to 20 h. Sequential biopsy specimens were taken from liver and skeletal muscle and used for determination of respiratory chain activities and propofol concentration. Activities were also measured in skeletal muscle from a patient who died of propofol infusion syndrome. RESULTS: In rats, authors detected a decrease in complex II+III activity starting at low tissue concentration of propofol (20 to 25 µM), further declining at higher concentrations. Before starting anesthesia, the complex II+III/citrate synthase activity ratio in liver was 0.46 (0.25) and in skeletal muscle 0.23 (0.05) (mean [SD]). After 20 h of anesthesia, the ratios declined to 0.17 (0.03) and 0.12 (0.02), respectively. When measured individually, the activities of complexes II and III remained normal. Skeletal muscle from one patient taken in the acute phase of propofol infusion syndrome also shows a selective decrease in complex II+III activity (z-score: -2.96). CONCLUSION: Propofol impedes the electron flow through the respiratory chain and coenzyme Q is the main site of interaction with propofol.


Subject(s)
Anesthetics, Intravenous/toxicity , Propofol/toxicity , Ubiquinone/metabolism , Animals , Citric Acid Cycle/drug effects , Electron Transport/drug effects , Male , Muscle, Skeletal/drug effects , Muscle, Skeletal/metabolism , Rats , Rats, Wistar , Respiration, Artificial , Syndrome
5.
Hum Mol Genet ; 22(13): 2590-602, 2013 Jul 01.
Article in English | MEDLINE | ID: mdl-23462291

ABSTRACT

Two siblings from consanguineous parents died perinatally with a condition characterized by generalized hypotonia, respiratory insufficiency, arthrogryposis, microcephaly, congenital brain malformations and hyperglycinemia. Catalytic activities of the mitochondrial respiratory complexes I and II were deficient in skeletal muscle, a finding suggestive of an inborn error in mitochondrial biogenesis. Homozygosity mapping identified IBA57 located in the largest homozygous region on chromosome 1 as a culprit candidate gene. IBA57 is known to be involved in the biosynthesis of mitochondrial [4Fe-4S] proteins. Sequence analysis of IBA57 revealed the homozygous mutation c.941A > C, p.Gln314Pro. Severely decreased amounts of IBA57 protein were observed in skeletal muscle and cultured skin fibroblasts from the affected subjects. HeLa cells depleted of IBA57 showed biochemical defects resembling the ones found in patient-derived cells, including a decrease in various mitochondrial [4Fe-4S] proteins and in proteins covalently linked to lipoic acid (LA), a cofactor produced by the [4Fe-4S] protein LA synthase. The defects could be complemented by wild-type IBA57 and partially by mutant IBA57. As a result of the mutation, IBA57 protein was excessively degraded, an effect ameliorated by protease inhibitors. Hence, we propose that the mutation leads to partial functional impairment of IBA57, yet the major pathogenic impact is due to its proteolytic degradation below physiologically critical levels. In conclusion, the ensuing lethal complex biochemical phenotype of a novel metabolic syndrome results from multiple Fe/S protein defects caused by a deficiency in the Fe/S cluster assembly protein IBA57.


Subject(s)
Brain Diseases/genetics , Carrier Proteins/genetics , Muscular Diseases/genetics , Mutation , Brain/pathology , Brain Diseases/diagnosis , Carrier Proteins/metabolism , Consanguinity , DNA Mutational Analysis , Electron Transport/genetics , Female , Fibroblasts/metabolism , Humans , Infant, Newborn , Magnetic Resonance Imaging , Male , Muscle, Skeletal/metabolism , Muscular Diseases/diagnosis , Pedigree , Phenotype , Siblings , Skin/metabolism
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