CherryChèvre: A fine-grained dataset for goat detection in natural environments.

We introduce a new dataset for goat detection that contains 6160 annotated images captured under varying environmental conditions. The dataset is intended for developing machine learning algorithms for goat detection, with applications in precision agriculture, animal welfare, behaviour analysis, and animal husbandry. The annotations were performed by expert in computer vision, ensuring high accuracy and consistency. The dataset is publicly available and can be used as a benchmark for evaluating existing algorithms. This dataset advances research in computer vision for agriculture.

Impact of Diet Supplementation and Age at Slaughter on Carcass Characteristics of Creole Goats.

The objective of this study was to evaluate the effects of diet and age on finishing performances and carcass characteristics of male Creole goats. A total of 91 weaned male Creole kids [84 days old ± 7 days, 9.2 kg live weight (LW) ± 0.5 kg] were randomly allocated in a 2 × 3 experimental design. The animals were fed individually with two diets: C0: a 28-day-old Digitaria decubens grass alone, or C50: the same grass plus a commercial concentrate (50% of the total diet) and then slaughtered at 7, 11, or 15 months of age. Significant feeding regimen and age at slaughter effects were observed on the goat carcass characteristics. The addition of concentrate improved the average daily gain (ADG), the dressing percentage, and the conformation score (1-5 scale) from 46 to 88 g/day, 52.8 to 62.4%, and 2.2 to 4.9, respectively. Moreover, carcasses of the C0 group appeared lean with less developed fat than the C50 group and lighter than visceral fat. The meat color was significantly more affected by diet than age. Our data suggested that the production of heavy carcasses with low proportions of fat in the meat is possible in this local breed. The valorization of such a forage feeding system until 11 months of age or with the addition of concentrate from 7 to 11 months of age should be evaluated economically.

Mixed Grazing and Dietary Supplementation Improve the Response to Gastrointestinal Nematode Parasitism and Production Performances of Goats.

Small ruminants are very affected by gastrointestinal nematode (GIN) parasitism worldwide. The improvement of the host protective response and the reduction of the probability of contact between hosts and parasites appear as very promising strategies. The objective of this study was to evaluate the effect of a combination of two components of these two strategies on natural GIN infection and production performances of Creole goat kids: dietary supplementation and a rotational mixed grazing system. One hundred and twenty weaned Creole kids and six Creole heifers were divided into four experimental batches: Splus (supplemented) vs. Szero (non-supplemented) × Mixed grazing (kids associated with heifers) vs. Control (kids alone), and grazing plots of forage grasses were balanced for live weight (LW) in both species. The feed intake, blood, and parasitological parameters and production performances between 3 and 11 months of age were monitored. The fecal egg count (FEC) was significantly lower and the packed cell volume (PCV) significantly higher in the Mixed grazing groups. No effect of supplementation was observed for FEC. In contrast, PCV, body condition score, and live weight were significantly higher in supplemented animals whatever the groups. Mixed grazing system and supplementation had significant effects on the slaughter parameters (P < 0.05), but there was no significant interaction. Our results suggested that the advantage driven either by mixed grazing or dietary supplementation on kids' performances would be equivalent, and the combination of both would improve the animal performances.

Mixed grazing of adult goats and cattle: Lessons from long-term monitoring.

Mixed grazing of breeding goats and cattle (goats to cattle ratio: about 50 %, based on metabolic weight) was monitored for 2 years on a rotational pasture with the two species grazing together, then for 5 years with cattle grazing immediately after goats. For both modalities, the level of goat parasite infection was not significantly different from that of the control groups. Nevertheless, the association allowed a slight improvement in kid growth and goat productivity, probably in relation to a better food quality. The response of adult goats to mixed grazing is therefore very different from that previously obtained with kids post-weaning. The question of the relationship between heterogeneity of pastures, knowledge of their environment, grazing behaviour of adult goats and risk of infection with gastrointestinal nematodes requires further investigation.

Transcriptome variation in response to gastrointestinal nematode infection in goats.

Gastrointestinal nematodes (GIN) are a major constraint for small ruminant production. Due to the rise of anthelmintic resistance throughout the world, alternative control strategies are needed. The development of GIN resistance breeding programs is a promising strategy. However, a better understanding of the mechanisms underlying genetic resistance might lead to more effective breeding programmes. In this study, we compare transcriptome profiling of abomasal mucosa and lymph node tissues from non-infected, resistant and susceptible infected Creole goats using RNA-sequencing. A total of 24 kids, 12 susceptible and 12 GIN resistant based on the estimated breeding value, were infected twice with 10,000 L3 Haemonchus contortus. Physiological and parasitological parameters were monitored during infection. Seven weeks after the second infection, extreme kids (n = 6 resistant and 6 susceptible), chosen on the basis of the fecal egg counts (FEC), and 3 uninfected control animals were slaughtered. Susceptible kids had significantly higher FEC compared with resistant kids during the second infection with no differences in worm burden, male and female worm count or establishment rate. A higher number of differentially expressed genes (DEG) were identified in infected compared with non-infected animals in both abomasal mucosa (792 DEG) and lymph nodes (1726 DEG). There were fewer DEG in resistant versus susceptible groups (342 and 450 DEG, in abomasal mucosa and lymph nodes respectively). 'Cell cycle' and 'cell death and survival' were the main identified networks in mucosal tissue when comparing infected versus non-infected kids. Antigen processing and presentation of peptide antigen via major histocompatibility complex class I were in the top biological functions for the DEG identified in lymph nodes. The TGFß1 gene was one of the top 5 upstream DEG in mucosal tissue. Our results are one of the fist investigating differences in the expression profile induced by GIN infection in goats.

Goats worm burden variability also results from non-homogeneous larval intake.

For small ruminants, Gastrointestinal Nematodes (GINs) are responsible for severe economic losses and they are also an animal welfare problem. GIN use their host to reproduce and disperse eggs on the pasture, from where they can re-infect another animal. The high density of hosts on the pasture and the extreme tolerance of GIN to environmental constraints make GIN eradication almost impossible. In addition, significant resistance to anthelmintic treatment requires sustainable and integrated management to maintain the health and financial well-being of livestock farming. In this context, models of the complex interactions between host, GIN and environment can help us to design long term optimal management strategies. To build such models, quantitative information is needed but are generally very challenging to collect. In this article, we focus on the number of ingested larvae per animal, which we propose to characterise by using a simulation framework based on the estimation of the spatial distribution of the host over time. Our framework allows us to show that worm burden individual variation is not only explained by the host's genetics, as is often the case, but is also a result of the grazing spatial process.

Effectiveness of several anthelmintics to control a Strongyloides sp. outbreak in Creole-de-Guadeloupe male kids aged 7 months.

Routine faecal examination of a herd of weaned male goats revealed heavy infections with gastrointestinal strongyles (GIS) and Strongyloides sp. Moxidectin (routinely dosed at 0.3 mg·kg-1, i.e., 1.5 times the sheep dose), although fully effective against GIS, failed to control Strongyloides sp., with an estimated faecal egg count reduction (FECR) of only 55.5%. In addition, levamisole (11.25 mg·kg-1) and ivermectin (0.3 mg·kg-1) also failed to control Strongyloides sp., with FECRs of 1.4% and 53.5%, respectively. On the other hand, albendazole (7.5 mg·kg-1) and netobimin (11.25 mg·kg-1 and 22.5 mg·kg-1) reduced by 96.3-99.9% the Strongyloides sp. faecal egg counts according to dose and remained effective, although, in the past, this drug family has been used extensively on the same farm and was no longer effective against GIS. Albendazole or netobimin at 3 times the dose for sheep may be effective for Strongyloides sp. control in case of severe infection.

Feasibility of a "leader-follower" grazing system instead of specialised paddocks with regard to integrated gastrointestinal control in small ruminant farming.

In the humid tropics, small ruminant farmers have to deal with gastrointestinal parasitic nematodes (GIN), among which anthelmintic resistant (AR) populations are rapidly spreading. Although targeted selective treatments (TSTs) are being increasingly used in breeding stock, suppressive drenchings remain the rule in younger animals, for safety and ease of implementation. Until now, the weaned animals are grazed on dedicated plots, making the selection and spread of AR parasites inevitable. Given that GINs disseminate through pastures, we compared the usual grazing system (control) to a "leader-follower" grazing system (LF) for managing the entire GIN population at the farm scale. There were no significant differences between treatments for the dam reproductive parameters and level of GIN infection nor for the pre-weaning death rate of the kids. The 70-day weight of the litter was significantly lower for LF than for control goats (9.71 vs. 11.64 kg, P < 0.05). Although they were more infested with GIN (1860 vs. 966 epg, P < 0.05), the LF weaned animals grew faster (53.4 vs. 40.8 g day(-1), P < 0.05) and their death rate was lower (4.0 vs. 7.7 %, P < 0.05). The overall animal output was estimated to 1010 [911; 1086] vs. 966 [885; 1046] kg LW ha(-1) year(-1), for LF and control grazing systems, respectively. Additionally, the LF grazing system would make the stocking rate easier to manage. Therefore, it is to be recommended as a complement of TSTs in sustainable small ruminant farming.

Genetic analysis of the potential role of IgA and IgE responses against Haemonchus contortus in parasite resistance of Creole goats.

Small ruminants are affected by gastrointestinal nematode (GIN) infection. A promising alternative strategy for control of GIN infection is to increase the level of resistance in the population by taking advantage of the host's immune response. Immunoglobulin A (IgA) and E (IgE) are known to be involved in immune response to GIN. The aim of this study was thus to investigate genetic parameters of IgA and IgE responses against Haemonchus contortus in Creole kids naturally challenged at pasture and to determine the relationship with other resistance criteria such as faecal egg counts, packed-cell volume, eosinophil counts and bodyweight. Variance and covariance components for genetic and residuals effects for each trait were estimated on 3862 males at 11 months of age. Heritability estimates for IgA and IgE ranged between 0.15 and 0.57. Strong positive genetic correlations were observed between either IgE or IgA responses against L3 and adult excretory/secretory products (ESP) antigens of H. contortus, suggesting that the humoral immune response is not specific to the life cycle stage of the parasite suggesting that there is substantial cross recognition between the different parasite antigens. Heritability estimates for faecal egg count (FEC), packed-cell volume (PCV) and bodyweight (BW) were in accordance with previous results in Creole kids. Blood eosinophil counts were found moderately heritable and negatively correlated with FEC, suggesting that this cell population plays a role in resistance to nematode parasite infection in Creole goats. IgA response was positively correlated to FEC, in contrast with the negative correlation between IgE against L3 of H. contortus and FEC. In Creole goats, IgA response against L3 or ESP of H. contortus would rather be associated with the worm burden than an immune protective response. The immune response involving activity of IgE against L3 of H. contortus may be one important pathway for development of resistance to gastrointestinal nematode infections in Creole goats.

Carcass conformation and cut composition of Creole goat from Guadeloupe.

Carcass data base of 164 Creole male goats was used in order to provide factual data on the carcass conformation. Standardised procedures of carcass measuring and cutting were followed. The European official grid of light lamb is implemented for meat goat in the French West Indies and included five levels. Weights of carcass, cuts and tissues, quality scores and linear measurements were analysed. Feeding system, age at slaughter and weight were taken into account for statistical analysis. There were significant differences among carcass conformation classes (CC) for many traits except for the fat score, leg length and compactness ratio (carcass width on length): 2.2, 34.5 cm and 0.30 on average, respectively. The values of chilled carcass weight and yield and the carcass linear measurements steadily increased until conformation class 4 or 5: 6.7 to 11.2 kg, 49% to 55% and 52.4 to 58.0 cm carcass length. For the weights of carcass cuts, significant differences appeared between two groups: classes 1 and 2 vs. classes 3, 4 and 5. Regardless of the carcass weight, the distribution of prime cuts remained similar. The indices calculated on a weight basis (kg/cm), either for the carcass or the leg, increased significantly (P<0.01): with 54% and 63% difference between the two extreme classes, respectively. The muscle, bone and fat proportions in the shoulder did not vary between CC with 0.72, 0.22 and 0.06, respectively. Corresponding traits in leg were 0.74, 0.23 and 0.03; the last two were different (P<0.05) from class 1 to class 5. The muscle/bone ratios calculated either in shoulder or in leg ranged from 3.1 to 3.6 (P>0.05).

Serum antibody responses in Creole kids experimentally infected with Haemonchus contortus.

The objective of this study was to evaluate the relationship of parasite-specific serum antibodies with the resistance status of Creole kids. The average breeding values on egg output predicted in a context of natural infection at 11 months of age were distant of 1.07 genetic standard deviation between resistant and susceptible animals. After drenching the animals were maintained worm-free during 1 month until experimental infection with 10,000 Haemonchus contortus infective larvae (L3). Enzyme-linked immunosorbent assay was carried out in serum samples to determine the level of IgG, IgA and IgE anti-H. contortus L3 crude extracts and adult excretion/secretion products (ESP). Parasitological and blood immunological parameters were measured on the 2 extreme groups. Despite the absence of any typical signs of haemonchosis, susceptible kids had more than 11 times higher faecal egg counts (FEC) at 35 days post-infection (d.p.i.) than resistant kids had. Levels of immunoglobulin against H. contortus L3 and ESP increased significantly after infection in both groups. However, no difference in the host immune response mediated by immunoglobulin against H. contortus was evidenced between groups. This finding suggests that, in goats previously infected by H. contortus, a degree of protection occurred and the phenotypic and genetic segregation in resistant and susceptible animals were not related to the humoral immune response. The correlation coefficients between FEC and IgE anti-ESP (r=0.593; P<0.05 was significant in both resistant and susceptible animals. Such correlation suggesting a hypersensitivity reaction dependent on worm prolificacy has never been described. This result needs further studies to understand the mechanisms underlying this observation.

Evaluation of targeted drenching using Famacha method in Creole goat: reduction of anthelmintic use, and effects on kid production and pasture contamination.

Haemonchus infection was monitored for 2 years (six kidding periods) in a Creole goat flock grazing under oceanic-tropical climate. Two hundred and thirty individual does were involved from late pregnancy to weaning. Anaemia diagnoses using Famacha method and packed cell volume (PCV) were compared. The best agreement (Kappa=0.33) was found if anaemia was declared when PCV values fell to 16 or below and Famacha score was 4 or 5. Drenching policy according to Famacha method was compared to systematic drenching policy. Using the Famacha method allowed a dramatic decrease in anthelmintic use during the periparturient period (0.57 individual dose instead of three doses for the control). The proportion of the nematode population on the pasture not derived from previously-treated goats (in refugia) was estimated to about 79% (65-90%) of the pasture contamination derived from the Famacha group. On the average, goats which needed to be drenched produced less than the control or undrenched goats (kid average daily gain was decreased by about 15%). The repeatability of the need for drenching individual does was estimated to 0.41. The older goats or the goats in poorer body condition at kidding needed more drenching than the younger animals and the animals in good body condition. Consequently the Famacha method may be used as an additional tool for the culling management.