Evidence of mixotrophic carbon-capture by n-butanol-producer Clostridium beijerinckii.

Recent efforts to combat increasing greenhouse gas emissions include their capture into advanced biofuels, such as butanol. Traditionally, biobutanol research has been centered solely on its generation from sugars. Our results show partial re-assimilation of CO2 and H2 by n-butanol-producer C. beijerinckii. This was detected as synchronous CO2/H2 oscillations by direct (real-time) monitoring of their fermentation gasses. Additional functional analysis demonstrated increased total carbon recovery above heterotrophic values associated to mixotrophic assimilation of synthesis gas (H2, CO2 and CO). This was further confirmed using 13C-Tracer experiments feeding 13CO2 and measuring the resulting labeled products. Genome- and transcriptome-wide analysis revealed transcription of key C-1 capture and additional energy conservation genes, including partial Wood-Ljungdahl and complete reversed pyruvate ferredoxin oxidoreductase / pyruvate-formate-lyase-dependent (rPFOR/Pfl) pathways. Therefore, this report provides direct genetic and physiological evidences of mixotrophic inorganic carbon-capture by C. beijerinckii.

High purity galacto-oligosaccharides enhance specific Bifidobacterium species and their metabolic activity in the mouse gut microbiome.

Prebiotics are selectively fermented ingredients that result in specific changes in the composition and/or activity of the gastrointestinal microbiota, thus conferring benefit(s) upon the host health. The aim of this study was to evaluate the influence of a ß(1-4)galacto-oligosaccharides (GOS) formulation consisting of 90% pure GOS (GOS90), on the composition and activity of the mouse gut microbiota. Germ-free mice were colonised with microbiota from four pathogen-free wt 129 mice donors (SPF), and stools were collected during a feeding trial in which GOS90 was delivered orally for 14 days. Pyrosequencing of 16S rDNA amplicons showed that Bifidobacterium and specific Lactobacillus, Bacteroides and Clostridiales were more prevalent in GOS90-fed mice after 14 days, although the prebiotic impact on Bifidobacterium varied among individual mice. Prebiotic feeding also resulted in decreased abundance of Bacteroidales, Helicobacter and Clostridium. High-throughput quantitative PCR showed an increased abundance of Bifidobacterium adolescentis, Bifidobacterium pseudocatenulatum, Bifidobacterium lactis and Bifidobacterium gallicum in the prebiotic-fed mice. Control female mice showed a higher diversity (phylogenetic diversity (PD) = 15.1 ± 3.4 in stools and PD = 13.0 ± 0.6 in intestinal contents) than control males (PD = 7.8 ± 1.6 in stool samples and PD = 9.5 ± 1.0 in intestinal contents). GOS90 did not modify inflammatory biomarkers (interleukin (IL)-6, IL-12, IL-1ß, interferon gamma and tumour necrosis factor alpha). Decreased butyrate, acetate and lactate concentrations in stools of prebiotic fed mice suggested an increase in colonic absorption and reduced excretion. Overall, our results demonstrate that GOS90 is capable of modulating the intestinal microbiome resulting in expansion of the probiome (autochtonous commensal intestinal bacteria considered to have a beneficial influence on health).

Fast separation liquid chromatography-tandem mass spectrometry for the confirmation and quantitative analysis of avermectin residues in food.

A new residue analytical method for the confirmation and quantification of avermectin residues in food is described in this article. This method allows a fast analysis for the determination of avermectin residues, abamectin (ABM), ivermectin (IVM), emamectin benzoate (EMA) and doramectin (DOR) by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Separation was performed using a short column of 1.8 microm particle size. The hybrid quadrupole/linear ion trap (QqQ(LIT)) system via the linearly accelerating (LINAC) high-pressure collision cell, allows the MS detection in multiple reaction monitoring (MRM) mode operating in fast scan acquisition times. The effect of reduced dwell times on mass spectral quality and sensitivity is evaluated in this study. For quantitative purposes, the influence of dwell time on S/N ratio and peak area was observed. ABM, IVM, EMA and DOR show an increased trend of peak area and S/N ratio, when dwell times are of 50 ms against 10-20 ms, suited when the number of compounds to be analyzed is higher. The sensitivity achieved by using the LC-MS/MS system is enough for the confirmation of avermectin residues in the selected commodities (salmon muscle and pepper) at trace concentration levels (sub-microg/kg and microg/kg) and therefore a sample pre-concentration step was not necessary. The instrumental limits of quantification (ILQ) are in the range of 0.15-5 ppb. Samples were extracted by solid-liquid extraction (SLE) procedure using acetonitrile, and cleaned-up using alumina. The average recoveries obtained were acceptable (80-95%). The calibration curves were linear over the working range from ILQs to 500 microg/kg. For the quantitative analysis, matrix-matched calibration and dilution of SLE extracts was proven as reliable alternative to compensate matrix-effects and for its feasible application in routine analysis.

Continuous production of L(+)-lactic acid by Lactobacillus casei in two-stage systems.

A two-stage two-stream chemostat system and a two-stage two-stream immobilized upflow packed-bed reactor system were used for the study of lactic acid production by Lactobacillus casei subsp casei. A mixing ratio of D12/D2 = 0.5 (D = dilution rate) resulted in optimum production, making it possible to generate continuously a broth with high lactic acid concentration (48 g l-1) and with a lowered overall content of initial yeast extract (5 g l-1), half the concentration supplied in the one-step process. In the two-stage chemostat system, with the first stage at pH 5.5 and 37 degrees C and a second stage at pH 6.0, a temperature change from 40 degrees C to 45 degrees C in the second stage resulted in a 100% substrate consumption at an overall dilution rate of 0.05 h-1. To increase the cell mass in the system, an adhesive strain of L. casei was used to inoculate two packed-bed reactors, which operated with two mixed feedstock streams at the optimal conditions found above. Lactic acid fermentation started after a lag period of cell growth over foam glass particles. No significant amount of free cells, compared with those adhering to the glass foam, was observed during continuous lactic acid production. The extreme values, 57.5 g l-1 for lactic acid concentration and 9.72 g l-1 h-1 for the volumetric productivity, in upflow packed-bed reactors were higher than those obtained for free cells (48 g l-1 and 2.42 g l-1 h-1) respectively and the highest overall L(+)-lactic acid purity (96.8%) was obtained in the two-chemostat system as compared with the immobilized-cell reactors (93%).

Chemostat production of plantaricin C by Lactobacillus plantarum LL441.

Plantaricin C, a bacteriocin synthesized by Lactobacillus plantarum LL441, was optimally produced in chemostats kept at pH 5.0, 30 degreesC, 150 rpm, and a dilution rate of 0.05 h-1 when glucose was used as carbon source and a dilution rate of 0.10 to 0.12 h-1 when sucrose or fructose was used instead. Production was abolished at high dilution rates, i.e., when the cells grew rapidly in all carbon sources.