The person-to-person transmission landscape of the gut and oral microbiomes.

The human microbiome is an integral component of the human body and a co-determinant of several health conditions1,2. However, the extent to which interpersonal relations shape the individual genetic makeup of the microbiome and its transmission within and across populations remains largely unknown3,4. Here, capitalizing on more than 9,700 human metagenomes and computational strain-level profiling, we detected extensive bacterial strain sharing across individuals (more than 10 million instances) with distinct mother-to-infant, intra-household and intra-population transmission patterns. Mother-to-infant gut microbiome transmission was considerable and stable during infancy (around 50% of the same strains among shared species (strain-sharing rate)) and remained detectable at older ages. By contrast, the transmission of the oral microbiome occurred largely horizontally and was enhanced by the duration of cohabitation. There was substantial strain sharing among cohabiting individuals, with 12% and 32% median strain-sharing rates for the gut and oral microbiomes, and time since cohabitation affected strain sharing more than age or genetics did. Bacterial strain sharing additionally recapitulated host population structures better than species-level profiles did. Finally, distinct taxa appeared as efficient spreaders across transmission modes and were associated with different predicted bacterial phenotypes linked with out-of-host survival capabilities. The extent of microorganism transmission that we describe underscores its relevance in human microbiome studies5, especially those on non-infectious, microbiome-associated diseases.

Comparative study of the intestinal parasitism profiles between communities across the 5 municipalities of the Barranquilla metropolitan area, Colombia.

OBJECTIVE: The aim of this study was to compare the rate of parasitism and intestinal parasitism profiles of children who live in relatively proximal communities across the 5 municipalities of the Barranquilla metropolitan area, Colombia. METHODS: In total, 986 fecal samples from children aged 1 to 10 were analyzed using a direct method (physiological saline and lugol) and the zinc sulfate flotation technique. A comparative analysis of the parasitism profiles between sampling locations (7 schools and 3 health centers providing growth and development services) was conducted using principal component analysis (PCA). The presence of Taenia solium antibodies was evaluated by the enzyme-linked immunosorbent assay method in 269 serum samples from the same group of children. RESULTS: The overall prevalence of intestinal parasitism was 57.6% (range, 42.1%-77.6%) across the sampling areas. The prevalence of helminthiasis was between 4.1% and 23.7%, and that of intestinal protozoa was between 38.2% and 73.5%. PCA showed that the parasite profiles of each sampling location shared no common characteristics. A total of 3.0% of the serum samples were positive for T. solium antibodies. CONCLUSION: The intestinal parasitism profiles between relatively proximal sampling locations with similar geographic conditions were vastly different, indicating the need to study each small ecological niche on a localized scale to develop more cost-effective interventions for controlling intestinal parasitism.

Correlation between physical activity and cardiovascular risk factors in postmenopausal women from Colombia Caribbean.

Postmenopausal period disturbances are more frequently observed in women with unhealthy lifestyles, insufficient physical activity is related to increased cardiovascular risk (CVR). There is a lack of evidence-based information on physical activity in postmenopausal women and its relationship with CVR factors, including D vitamin serum levels. OBJECTIVE: To determine the physical activity level in postmenopausal women from the Colombia Caribbean and establish relationships between the physical activity and biochemical and anthropometric CVR factors. METHODS: A correlational descriptive study in which 183 postmenopausal women were linked for convenience sampling. Level of physical activity (International Physical Activity Questionnaire) and their relationships with anthropometric variables, blood pressure, lipid profile, glycemic and serum vitamin D were evaluated. RESULTS: According to the physical activity, 82.5% of women were classified as inactive, 9.3% as insufficiently active and only 8.2% as physically active. Physical inactivity was significantly related to higher glucose, triglycerides, and total cholesterol serum levels (P < .05). The prevalence of the women with vitamin D levels less than 30 ng/mL were of 69.9%. The women physically active and with eutrophic nutritional condition had more high levels of vitamin D. CONCLUSIONS: 82.5% of the postmenopausal women evaluated were physically inactive and this condition was associated with higher serum levels of glycemic, total cholesterol and triglycerides. Serum vitamin D concentrations were higher in traffic and physically active women.

Unique Microbial Catabolic Pathway for the Human Core N-Glycan Constituent Fucosyl-α-1,6-N-Acetylglucosamine-Asparagine.

The survival of commensal bacteria in the human gut partially depends on their ability to metabolize host-derived molecules. The use of the glycosidic moiety of N-glycoproteins by bacteria has been reported, but the role of N-glycopeptides or glycoamino acids as the substrates for bacterial growth has not been evaluated. We have identified in Lactobacillus casei strain BL23 a gene cluster (alf-2) involved in the catabolism of the glycoamino acid fucosyl-α-1,6-N-GlcNAc-Asn (6'FN-Asn), a constituent of the core-fucosylated structures of mammalian N-glycoproteins. The cluster consists of the genes alfHC, encoding a major facilitator superfamily (MFS) permease and the α-l-fucosidase AlfC, and the divergently oriented asdA (aspartate 4-decarboxylase), alfR2 (transcriptional regulator), pepV (peptidase), asnA2 (glycosyl-asparaginase), and sugK (sugar kinase) genes. Knockout mutants showed that alfH, alfC, asdA, asnA2, and sugK are necessary for efficient 6'FN-Asn utilization. The alf-2 genes are induced by 6'FN-Asn, but not by its glycan moiety, via the AlfR2 regulator. The constitutive expression of alf-2 genes in an alfR2 strain allowed the metabolism of a variety of 6'-fucosyl-glycans. However, GlcNAc-Asn did not support growth in this mutant background, indicating that the presence of a 6'-fucose moiety is crucial for substrate transport via AlfH. Within bacteria, 6'FN-Asn is defucosylated by AlfC, generating GlcNAc-Asn. This glycoamino acid is processed by the glycosylasparaginase AsnA2. GlcNAc-Asn hydrolysis generates aspartate and GlcNAc, which is used as a fermentable source by L.casei These data establish the existence in a commensal bacterial species of an exclusive metabolic pathway likely to scavenge human milk and mucosal fucosylated N-glycopeptides in the gastrointestinal tract.IMPORTANCE The gastrointestinal tract accommodates more than 1014 microorganisms that have an enormous impact on human health. The mechanisms enabling commensal bacteria and administered probiotics to colonize the gut remain largely unknown. The ability to utilize host-derived carbon and energy resources available at the mucosal surfaces may provide these bacteria with a competitive advantage in the gut. Here, we have identified in the commensal species Lactobacillus casei a novel metabolic pathway for the utilization of the glycoamino acid fucosyl-α-1,6-N-GlcNAc-Asn, which is present in the core-fucosylated N-glycoproteins from mammalians. These results give insight into the molecular interactions between the host and commensal/probiotic bacteria and may help to devise new strategies to restore gut microbiota homeostasis in diseases associated with dysbiotic microbiota.

Lecitina colesterol aciltransferasa en mujeres postmenopáusicas y su relación con factores bioquímicos y antropométricos asociados a riesgo cardiovascular / Lecithin cholesterol acyltransferase in serum of postmenopausal women in relation to biochemical and anthropometric factors associated to cardiovascular risk

Resumen Objetivo: determinar los valores séricos de la enzima lecitina colesterol aciltransferasa en un grupo de mujeres postmenopáusicas, y establecer su relación con factores asociados a riesgo cardiovascular. Materiales y métodos: estudio descriptivo transversal prospectivo, correlacional, que incluyó 56 mujeres postmenopáusicas en quienes se evaluaron variables antropométricas y bioquímicas (perfil lipídico y glicemia basal) asociadas a riesgo cardiovascular y se correlacionaron con las concentraciones séricas de lecitina colesterol aciltransferasa. Resultados: los valores séricos promedio de dicha enzima fueron 7,89 ± 1,26 (g/ml. Las mujeres con valores de índice de masa corporal superior a 25 tienen niveles séricos de lecitina colesterol aciltransferasa significativamente mayores que aquellas que tienen índice de masa corporal normal. No se observaron relaciones significativas entre los niveles de lecitina colesterol aciltransferasa y las variables bioquímicas evaluadas. Conclusiones: este trabajo es uno de los primeros que evalúa los niveles séricos de lecitina colesterol aciltransferasa en mujeres postmenopáusicas del Caribe colombiano. Se encontró una relación significativa entre los niveles séricos de lecitina colesterol aciltransferasa y los valores de índice de masa corporal elevados. Se requieren nuevos estudios para entender mejor la relación entre los niveles séricos de lecitina colesterol aciltransferasa y el riesgo cardiovascular en mujeres postmenopáusicas.

Abstract Objective: To determine the serum levels of lecithin cholesterol acyltransferase in a group of postmenopausal women and to establish their relationship with factors associated with cardiovascular risk. Materials and methods: A descriptive, correlational and cross-sectional study was performed that included 56 postmenopausal women. Anthropometric and biochemical (lipid profile and baseline blood glucose) variables associated with cardiovascular risk were measured, and were correlated with the serum concentrations of lecithin cholesterol acyltransferase. Results: The mean serum level of lecithin cholesterol acyltransferase was 7.89 ± 1.26 (g/ml. The women with a body mass index greater than 25 had significantly higher serum levels of the enzyme than those that had a normal body mass index. No significant relationships were observed between the levels of lecithin cholesterol acyltransferase and the biochemical variables evaluated. Conclusions: This study is one of the first that has evaluated the serum levels of lecithin cholesterol acyltransferase in postmenopausal women of the Colombian Caribbean. A significant relationship was found between the serum levels of lecithin cholesterol acyltransferase and elevated values of the body mass index. Further studies are required for a better understanding of the relationship between the serum levels of lecithin cholesterol acyltransferase and cardiovascular risk in postmenopausal women.

Bifidobacterias como indicadoras de contaminación fecal en aguas tropicales

La contaminación fecal humana en el agua constituye un importante riesgo para la salud pública, sin embargo, los microorganismos indicadores comúnmente utilizados para detectar contaminación fecal no identifican su fuente específica. La detección de ciertas especies del género Bifidobacterium como B. adolescentis y B. dentium ha sido propuesta como un efectivo marcador de contaminación fecal humana, pero esto no ha sido evaluado en las condiciones ambientales tropicales. El objetivo de este trabajo fue determinar el perfil de bifidobacterias, en una muestra de agua de la Ciénaga de Mesolandia en el Caribe Colombiano y en 260 muestras fecales humanas y 94 de animales domésticos de un asentamiento humano periférico a la ciénaga. El ADN extraído de cada una de las muestras fue amplificado por PCR mediante el uso de cebadores específicos de género basados en la secuencia del gen 16S ARNr y separados por DGGE (Electroforesis en Gel con Gradiente Desnaturalizante). Las bandas obtenidas en DGGE, fueron extraídas del gel, re-amplificadas, secuenciadas y las secuencias comparadas con la base de datos del GenBank. El perfil de bifidobacterias en DGGE mostró la presencia de ocho especies de Bifidobacterias en la muestra de agua, las cuales también fueron identificadas en las heces humanas. B. adolescentis y B. dentium propuestas como marcadores de contaminación fecal humana, también fueron encontradas en animales domésticos. En este estudio bajo las condiciones ambientales y experimentales evaluadas no fue posible encontrar una especie de Bifidobacteria específica para ser utilizada como marcador de contaminación fecal humana en ambientes tropicales. Sin embargo, el método aplicado permitió una aproximación más cercana al origen de la contaminación fecal en relación con los métodos culturales tradicionales, ya que fue posible encontrar secuencias de ADN idénticas en el agua y en las muestras fecales.

Human fecal pollution in water constitute a serious risk to the public health, nevertheless the indicator microorganisms commonly used to detect the levels of fecal pollution does not identify the specific source. The detection of certain Bifidobacterium species as B. adolescentis and B. dentium have been proposed as an effective marker of human fecal contamination, but this has not yet been demonstrated in tropical environmental conditions. The aim of the present work was to determine the Bifidobacteria profile in one sample of water from the Mesolandia Swamp in the Colombian Caribbean and feces samples of 260 human and 94 domestic animals from a human settlement around the swamp. DNA from all the samples was amplified by PCR using specific specie primers based on the 16S rRNA gene sequence and separated by DGGE (Denaturing Gradient Gel Electrophoresis). DGGE bands were excised, reamplified, sequenced, and compared to GenBank database. Bifidobacterial DGGE profiles showed that eight species of Bifidobacterium that were found in the water sample, were also present in the human and animal feces. Bifidobacterium adolescentis and B. dentium described as potential human fecal pollution indicators were found in domestic animals. In this study under the environmental and experimental conditions evaluated was not possible to find a Bifidobacterium species as specific marker of human fecal contamination in tropical areas. However, the applied method in this study could be useful to detect fecal pollution in tropical waters allowing a nearest approximation to the origin of the fecal pollution compared with cultural traditional methods, since it was possible to find identical DNA sequences in the water and in the fecal samples.

Parasitismo intestinal en poblaciones con alto grado de vulnerabilidad del Caribe colombiano / Intestinal parasitism in populations with a high degree of vulnerability in the Colombian Caribbean

Introducción: Los parásitos intestinales tienen alto impacto en la salud de la población mundial y pueden constituir un factor más de riesgo en poblaciones en alto grado de vulnerabilidad por desplazamientos humanos a causa de la pobreza, violencia o catástrofes naturales. Objetivo: Evaluar el parasitismo intestinal en los habitantes de dos asentamientos humanos en alto grado de vulnerabilidad. Métodos: estudio descriptivo de corte transversal, en el que se analizaron 367 muestras fecales de los habitantes de dos asentamientos humanos en estado de vulnerabilidad del departamento del Atlántico-Colombia, durante los años 2015 y 2016. Se realizó examen directo de las heces en solución salina, lugol y concentración con el método formol-éter. Se estableció la frecuencia absoluta y relativa de los parásitos presentes y se compararon los resultados entre los dos lugares de muestreo. Resultados: el 91,28 por ciento de la población analizada tenía parásitos intestinales. Las helmintiasis presentaron una frecuencia del 52,32 por ciento. Los parásitos más frecuentes fueron Blastocystis sp. (49,05 por ciento) y Trichuris trichiura (44,96 por ciento). Conclusiones: La alta prevalencia de parásitos en las poblaciones vulnerables analizadas, plantea la necesidad de implementar estrategias para el control del parasitismo intestinal dentro de los planes de prevención y mitigación de riesgos(AU)

Introduction: Intestinal parasites have high impact in the health of the world population and can constitute another risk factor in populations with a high degree of vulnerability by human displacements because of poverty, violence or natural catastrophes. Objective: To evaluate intestinal parasitism in inhabitants of two populations with high degree of vulnerability. Methods: Cross sectional, descriptive study in which 367 stool samples were analyzed from the inhabitants of two populations with high vulnerability's degree, in Atlántico-Colombia department during the years 2015 and 2016. The parasitological analysis was performed by direct examination of the stool samples in saline, lugol and concentration solutions by the formalin-ether method. The absolute and relative frequencies of the parasites present were established and the results between the sampled places were compared. Results: 91.28 percent of the population was infected with intestinal parasites. Helminthiasis showed a frequency of 52.32 percent. The most frequents parasites were Blastocystis sp. (49.05 percent) and Trichuris trichiura (44.96 percent). Conclusions: The high prevalence of parasites in the analyzed populations with a high degree of vulnerability expresses the need of implementing strategies for the control of intestinal parasitism in the prevention and risk's mitigation planning(AU)

Relationship between Serum Vitamin D Levels and HDL Cholesterol in Postmenopausal Women from Colombian Caribbean.

BACKGROUND: Previous evidence suggests that metabolic disorders in postmenopausal women could be related with low serum vitamin D levels. For example, vitamin D deficiency has been associated with increased risk factors for cardiovascular disease (CVD), mainly those related with metabolic syndrome. OBJECTIVE: To assess the relationship between the serum vitamin D (25-OH-D) levels and the metabolic syndrome markers in postmenopausal women. METHODS: This descriptive and cross-sectional study was conducted in 183 postmenopausal women of four municipalities from Colombian Caribbean. The serum 25-OH-D levels and the anthropometric and biochemical markers were assessed and correlated with metabolic syndrome. RESULTS: The average value of serum vitamin D (25-OH-D) was 26.34 ± 9.08 ng/mL, and 69.95% of the women had vitamin D levels <30 ng/mL, of which 43.72% were with insufficiency (<30 to >20 ng/mL) and 26.23% with deficiency (<20 ng/mL). Of the evaluated women, the 81.42% seemed to have metabolic syndrome. Through the linear regression, one significant positive association was observed between the HDL cholesterol and the 25-OH-D levels (P=0.014). CONCLUSION: In the evaluated population in this study, vitamin D deficiency is related with low HDL cholesterol levels.

Preparative scale purification of fucosyl-N-acetylglucosamine disaccharides and their evaluation as potential prebiotics and antiadhesins.

Fucosyl-N-acetylglucosamine disaccharides are important core structures that form part of human mucosal and milk glyco-complexes. We have previously shown that AlfB and AlfC α-L-fucosidases from Lactobacillus casei are able to synthesize fucosyl-α-1,3--N-acetylglucosamine (Fuc-α1,3-GlcNAc) and fucosyl-α-1,6-N-acetylglucosamine (Fuc-α1,6-GlcNAc), respectively, in transglycosylation reactions. Here, these reactions were performed in a semipreparative scale, and the produced disaccharides were purified. The maximum yields obtained of Fuc-α1,3-GlcNAc and Fuc-α1,6-GlcNAc were 4.2 and 9.3 g/l, respectively. The purified fucosyl-disaccharides were then analyzed for their prebiotic effect in vitro using strains from the Lactobacillus casei/paracasei/rhamnosus group and from Bifidobacterium species. The results revealed that 6 out of 11 L. casei strains and 2 out of 6 L. rhamnosus strains tested were able to ferment Fuc-α1,3-GlcNAc, and L. casei BL87 and L. rhamnosus BL327 strains were also able to ferment Fuc-α1,6-GlcNAc. DNA hybridization experiments suggested that the metabolism of Fuc-α1,3-GlcNAc in those strains relies in an α-L-fucosidase homologous to AlfB. Bifidobacterium breve and Bibidobacterium pseudocatenolatum species also metabolized Fuc-α1,3-GlcNAc. Notably, L-fucose was excreted from all the Lactobacillus and Bifidobacterium strains fermenting fucosyl-disaccharides, except from strains L. rhamnosus BL358 and BL377, indicating that in these latest strains, L-fucose was catabolized. The fucosyl-disaccharides were also tested for their inhibitory potential of pathogen adhesion to human colon adenocarcinoma epithelial (HT29) cell line. Enteropathogenic Escherichia coli (EPEC) strains isolated from infantile gastroenteritis were used, and the results showed that both fucosyl-disaccharides inhibited adhesion to different extents of certain EPEC strains to HT29 cells in tissue culture.

An L-Fucose Operon in the Probiotic Lactobacillus rhamnosus GG Is Involved in Adaptation to Gastrointestinal Conditions.

L-Fucose is a sugar present in human secretions as part of human milk oligosaccharides, mucins, and other glycoconjugates in the intestinal epithelium. The genome of the probiotic Lactobacillus rhamnosus GG (LGG) carries a gene cluster encoding a putative L-fucose permease (fucP), L-fucose catabolic pathway (fucI, fucK, fucU, and fucA), and a transcriptional regulator (fucR). The metabolism of L-fucose in LGG results in 1,2-propanediol production, and their fucI and fucP mutants displayed a severe and mild growth defect on L-fucose, respectively. Transcriptional analysis revealed that the fuc genes are induced by L-fucose and subject to a strong carbon catabolite repression effect. This induction was triggered by FucR, which acted as a transcriptional activator necessary for growth on L-fucose. LGG utilized fucosyl-α1,3-N-acetylglucosamine and contrarily to other lactobacilli, the presence of fuc genes allowed this strain to use the L-fucose moiety. In fucI and fucR mutants, but not in fucP mutant, L-fucose was not metabolized and it was excreted to the medium during growth on fucosyl-α1,3-N-acetylglucosamine. The fuc genes were induced by this fucosyl-disaccharide in the wild type and the fucP mutant but not in a fucI mutant, showing that FucP does not participate in the regulation of fuc genes and that L-fucose metabolism is needed for FucR activation. The l-fucose operon characterized here constitutes a new example of the many factors found in LGG that allow this strain to adapt to the gastrointestinal conditions.