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1.
Microbiol Resour Announc ; 9(50)2020 Dec 10.
Article in English | MEDLINE | ID: mdl-33303672

ABSTRACT

The genome of Francisella tularensis live vaccine strain NR-28537 was sequenced by a hybrid approach utilizing an Oxford Nanopore Technologies R9 flow cell and an Illumina MiSeq platform. De novo assembly of the resulting long and short reads produced a single-contig whole-genome sequence.

3.
Emerg Infect Dis ; 24(4)2018 04.
Article in English | MEDLINE | ID: mdl-29553922

ABSTRACT

The revelation in May 2015 of the shipment of γ irradiation-inactivated wild-type Bacillus anthracis spore preparations containing a small number of live spores raised concern about the safety and security of these materials. The finding also raised doubts about the validity of the protocols and procedures used to prepare them. Such inactivated reference materials were used as positive controls in assays to detect suspected B. anthracis in samples because live agent cannot be shipped for use in field settings, in improvement of currently deployed detection methods or development of new methods, or for quality assurance and training activities. Hence, risk-mitigated B. anthracis strains are needed to fulfill these requirements. We constructed a genetically inactivated or attenuated strain containing relevant molecular assay targets and tested to compare assay performance using this strain to the historical data obtained using irradiation-inactivated virulent spores.


Subject(s)
Anthrax/microbiology , Bacillus anthracis/physiology , Bacillus anthracis/radiation effects , Radiation , Spores, Bacterial/radiation effects , Animals , Bacillus anthracis/virology , Bacterial Toxins/genetics , Female , Gene Knockdown Techniques , Humans , Mice , Mutagenesis, Insertional , Plasmids/genetics , Recombination, Genetic , Reproducibility of Results , Virulence , Whole Genome Sequencing
14.
J Virol Methods ; 187(2): 372-9, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23174162

ABSTRACT

Koi herpesvirus (KHV) infection is associated with high mortalities in both common carp (Cyprinus carpio carpio) and koi carp (Cyprinus carpio koi) worldwide. Although acute infection has been reported in both domestic and wild common carp, the status of KHV latent infection is largely unknown in wild common carp. To investigate whether KHV latency is present in wild common carp, the distribution of KHV latent infection was investigated in two geographically distinct populations of wild common carp in Oregon, as well as in koi from an Oregon-based commercial supplier. Latent KHV infection was demonstrated in white blood cells from each of these populations. Although KHV isolated from acute infections has two distinct genetic groups, Asian and European, KHV detected in wild carp has not been genetically characterized. DNA sequences from ORF 25 to 26 that are unique between Asian and European were investigated in this study. KHV from captive koi and some wild common carp were found to have ORF-25-26 sequences similar to KHV-J (Asian), while the majority of KHV DNA detected in wild common carp has similarity to KHV-U/-I (European). In addition, DNA sequences from IL-10, and TNFR were sequenced and compared with no differences found, which suggests immune suppressor genes of KHV are conserved between KHV in wild common carp and koi, and is consistent with KHV-U, -I, -J.


Subject(s)
Carps/virology , Fish Diseases/virology , Herpesviridae Infections/veterinary , Herpesviridae/pathogenicity , Virus Latency , Animals , Base Sequence , DNA, Viral/chemistry , DNA, Viral/genetics , Herpesviridae Infections/virology , Interleukin-10/genetics , Leukocytes/virology , Molecular Sequence Data , Open Reading Frames , Oregon , Polymorphism, Genetic , Receptors, Tumor Necrosis Factor/genetics , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology
15.
Fish Shellfish Immunol ; 30(2): 646-52, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21199672

ABSTRACT

Studies of innate immunity in fish species of special concern are essential for better understanding of their health status during hatchery rearing conditions. The cytochemical and morphological characterizations of blood granulocytes have been used to provide information about phylogenetic differences and determine the potential use of neutrophil function assays. Rapid, simple, cytochemical staining kits used routinely for staining mammalian granulocytes have been used to characterize granulocytes from blood of four fish species: Arctic grayling, cutthroat trout, June sucker, and shovelnose sturgeon. Blood smears were stained with Peroxidase 391 (myeloperoxidase, MPO), alkaline phosphatase (AP), Periodic Acid Schiff (PAS) and Diff-quick stain; examined using bright field and differential interference contrast microscopy. Granulocytes on blood smears were evaluated based on the cell morphology, and presence or absence of the specific chromogen. Presence of lymphocytes, monocytes, platelets/thrombocytes and granulocytes was determined in all fish species. Arctic grayling, June sucker, and cutthroat trout had MPO positive granulocytes, while shovelnose sturgeon heterophils had positive reaction for leukocyte AP, but not MPO. Presence of MPO indicated potential to measure oxidative burst and degranulation of neutrophil primary granules in Arctic grayling, cutthroat trout and June sucker. Absence of MPO in shovelnose sturgeon suggested use of different enzyme marker (AP) in degranulation assay for this species. Standardization of cytochemical techniques allowed for rapid screening of leukocyte types, reducing the number of fish, time and effort to select adequate neutrophil function assays to be used in studies of health status in species of special concern.


Subject(s)
Fisheries/methods , Fishes/immunology , Granulocytes/cytology , Granulocytes/metabolism , Staining and Labeling/veterinary , Animals
16.
J Health Organ Manag ; 20(2-3): 163-72, 2006.
Article in English | MEDLINE | ID: mdl-16869352

ABSTRACT

PURPOSE: The purpose of this study was to explore gender differences in contractual commitments, job satisfaction and spouses' occupation among GP principals in NHS Scotland. DESIGN/METHODOLOGY/APPROACH: This paper is based on data provided by a self-completion, postal questionnaire survey. The response rate was 50 per cent. FINDINGS: Males worked more hours than females and were more likely to work out-of-hours. Females reported greater job satisfaction but only when they worked fewer hours. Females earned less than males but there were no gender differences in total household income. Both genders planned to retire at 59 years. More males would delay retirement if they could work part-time. More females than males were in dual-doctor households. Male respondents in dual-doctor households were more likely to have modified their working hours or career aspirations than males in other households. PRACTICAL IMPLICATIONS: The number of hours worked by GPs is in part determined by the occupation/earning power of their spouse. The number of women GPs is increasing and they are likely to continue to choose to work fewer hours than their male counterparts have done in the past. ORIGINALITY/VALUE: This study has attempted to incorporate spouse's occupation/income as a factor in the career choices of GPs in Scotland.


Subject(s)
Decision Making , Income/classification , Job Satisfaction , Occupations/classification , Physicians, Family/psychology , Spouses/classification , Workload/statistics & numerical data , Adult , Age Factors , Career Mobility , Family Characteristics , Female , Humans , Male , Middle Aged , Physicians, Family/statistics & numerical data , Retirement , Scotland , Sex Factors , Spouses/statistics & numerical data , State Medicine , Surveys and Questionnaires
17.
J Health Organ Manag ; 19(1): 5-15, 2005.
Article in English | MEDLINE | ID: mdl-15938599

ABSTRACT

PURPOSE: The purpose of this study is to explore non-principals' working patterns and attitudes to work. DESIGN/METHODOLOGY/APPROACH: The article is based on data provided by a questionnaire survey. Findings - Gender division was apparent among the non-principals. Males were more likely to work full-time, because their spouses modified their working hours. RESEARCH LIMITATIONS/IMPLICATIONS: It was impossible to identify all non-principals in Scotland or to compare responders and non-responders, due to the lack of official data. Hence, the results might not be representative. PRACTICAL IMPLICATIONS: More flexible posts would enable GPs to more easily combine paid work with family commitments. It is anticipated that the new GP contract should deliver this. ORIGINALITY/VALUE: This was the first time a study of all non-principals in Scotland had been attempted. The findings provide a more comprehensive picture of GPs in Scotland and provide valuable information for policymakers.


Subject(s)
Attitude of Health Personnel , Job Satisfaction , Personnel Staffing and Scheduling , Physicians, Family/psychology , Adult , Education, Medical, Continuing , Family Relations , Female , Humans , Male , Middle Aged , Physicians, Family/statistics & numerical data , Scotland , State Medicine , Surveys and Questionnaires , Work Schedule Tolerance , Workload
18.
Med Teach ; 26(5): 483-6, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15369892

ABSTRACT

This paper describes an evaluation of a computer-assisted learning (CAL) resource for primary care researchers. A two-phase approach was adopted involving a questionnaire survey and follow-up telephone interviews with a purposive sample of respondents. Results indicate wide support for this approach to self-directed learning, particularly for those with less experience. Respondents emphasized the flexibility and accessibility of the resource, with Internet links encouraging users to branch out. Potential barriers included securing protected learning time and lack of interaction with peers.


Subject(s)
Computer-Assisted Instruction/standards , Primary Health Care , Research Personnel/education , CD-ROM , Health Services Research , Internet , Program Evaluation , Surveys and Questionnaires , User-Computer Interface
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