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Sci Rep ; 14(1): 9928, 2024 04 30.
Article in English | MEDLINE | ID: mdl-38688976

ABSTRACT

SQUAMOSA promoter binding-like proteins (SPLs) are important transcription factors that influence growth phase transition and reproduction in plants. SPLs are targeted by miR156 but the SPL/miR156 module is completely unknown in oat. We identified 28 oat SPL genes (AsSPLs) distributed across all 21 oat chromosomes except for 4C and 6D. The oat- SPL gene family represented six of eight SPL phylogenetic groups, with no AsSPLs in groups 3 and 7. A novel oat miR156 (AsmiR156) family with 21 precursors divided into 7 groups was characterized. A total of 16 AsSPLs were found to be targeted by AsmiR156. Intriguingly, AsSPL3s showed high transcript abundance during early inflorescence (GS-54), as compared to the lower abundance of AsmiR156, indicating their role in reproductive development. Unravelling the SPL/miR156 regulatory hub and alterations in expression patterns of AsSPLs could provide an essential toolbox for genetic improvement in the cultivated oat.


Subject(s)
Avena , Gene Expression Regulation, Plant , MicroRNAs , Plant Proteins , MicroRNAs/genetics , MicroRNAs/metabolism , Avena/genetics , Avena/metabolism , Avena/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Phylogeny , Transcription Factors/metabolism , Transcription Factors/genetics , Promoter Regions, Genetic , Chromosomes, Plant/genetics , Gene Expression Profiling
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