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1.
J Proteome Res ; 18(10): 3780-3791, 2019 10 04.
Article in English | MEDLINE | ID: mdl-31483676

ABSTRACT

This work addresses the question of how the Ca2+ sensor protein calmodulin shapes cellular responses to Ca2+ signals. Proteins interacting with affinity tagged calmodulin were captured by rapid (t1/2 ≈ 7 s) photoactivated cross-linking under basal conditions, after brief removal of extracellular Ca2+ and during a cytosolic [Ca2+] transient in cells metabolically labeled with a photoreactive methionine analog. Tagged adducts were stringently enriched, and captured proteins were identified and quantified by LC-MS/MS. A set of 489 proteins including 27 known calmodulin interactors was derived. A threshold for fractional capture was applied to define a high specificity group of 170 proteins, including 22 known interactors, and a low specificity group of 319 proteins. Capture of ∼60% of the high specificity group was affected by manipulations of Ca2+, compared with ∼20% of the low specificity group. This suggests that the former is likely to contain novel interactors of physiological significance. The capture of 29 proteins, nearly all high specificity, was decreased by the removal of extracellular Ca2+, although this does not affect cytosolic [Ca2+]. Capture of half of these was unaffected by the cytosolic [Ca2+] transient, consistent with high local [Ca2+]. These proteins are hypothesized to reside in or near microdomains of high [Ca2+] supported by the Ca2+ influx.


Subject(s)
Calmodulin/metabolism , Cells/metabolism , Cross-Linking Reagents/radiation effects , Methionine/metabolism , Proteins/metabolism , Calcium/metabolism , Calcium Signaling , Cells/chemistry , Cells, Cultured , Chromatography, Liquid , Humans , Protein Binding , Tandem Mass Spectrometry
2.
FEBS Lett ; 589(11): 1173-8, 2015 May 08.
Article in English | MEDLINE | ID: mdl-25871521

ABSTRACT

Activation of endothelial nitric oxide synthase (eNOS) by calmodulin (CaM) facilitates formation of a sequence of conformational states that is not well understood. Fluorescence decays of fluorescently labeled CaM bound to eNOS reveal four distinct conformational states and single-molecule fluorescence trajectories show multiple fluorescence states with transitions between states occurring on time scales of milliseconds to seconds. A model is proposed relating fluorescence quenching states to enzyme conformations. Specifically, we propose that the most highly quenched state corresponds to CaM docked to an oxygenase domain of the enzyme. In single-molecule trajectories, this state occurs with time lags consistent with the oxygenase activity of the enzyme.


Subject(s)
Calmodulin/chemistry , Models, Molecular , Multiprotein Complexes/chemistry , Nitric Oxide Synthase Type III/chemistry , Animals , Cattle , Fluorescence Recovery After Photobleaching , Fluorometry , Protein Binding , Protein Structure, Quaternary , Protein Structure, Tertiary
3.
Biochemistry ; 54(2): 588-97, 2015 Jan 20.
Article in English | MEDLINE | ID: mdl-25485972

ABSTRACT

Carbapenems are the last resort antibiotics for treatment of life-threatening infections. The GES ß-lactamases are important contributors to carbapenem resistance in clinical bacterial pathogens. A single amino acid difference at position 170 of the GES-1, GES-2, and GES-5 enzymes is responsible for the expansion of their substrate profile to include carbapenem antibiotics. This highlights the increasing need to understand the mechanisms by which the GES ß-lactamases function to aid in development of novel therapeutics. We demonstrate that the catalytic efficiency of the enzymes with carbapenems meropenem, ertapenem, and doripenem progressively increases (100-fold) from GES-1 to -5, mainly due to an increase in the rate of acylation. The data reveal that while acylation is rate limiting for GES-1 and GES-2 for all three carbapenems, acylation and deacylation are indistinguishable for GES-5. The ertapenem-GES-2 crystal structure shows that only the core structure of the antibiotic interacts with the active site of the GES-2 ß-lactamase. The identical core structures of ertapenem, doripenem, and meropenem are likely responsible for the observed similarities in the kinetics with these carbapenems. The lack of a methyl group in the core structure of imipenem may provide a structural rationale for the increase in turnover of this carbapenem by the GES ß-lactamases. Our data also show that in GES-2 an extensive hydrogen-bonding network between the acyl-enzyme complex and the active site water attenuates activation of this water molecule, which results in poor deacylation by this enzyme.


Subject(s)
Anti-Bacterial Agents/metabolism , Bacterial Proteins/metabolism , Carbapenems/metabolism , Escherichia coli/enzymology , Thienamycins/metabolism , beta-Lactamases/metabolism , beta-Lactams/metabolism , Bacterial Proteins/chemistry , Catalytic Domain , Crystallography, X-Ray , Doripenem , Ertapenem , Escherichia coli/chemistry , Escherichia coli/metabolism , Kinetics , Meropenem , Models, Molecular , beta-Lactamases/chemistry
4.
FEBS Lett ; 587(3): 297-301, 2013 Jan 31.
Article in English | MEDLINE | ID: mdl-23266515

ABSTRACT

We have derived structures of intact calmodulin (CaM)-free and CaM-bound endothelial nitric oxide synthase (eNOS) by reconstruction from cryo-electron micrographs. The CaM-free reconstruction is well fitted by the oxygenase domain dimer, but the reductase domains are not visible, suggesting they are mobile and thus delocalized. Additional protein is visible in the CaM-bound reconstruction, concentrated in volumes near two basic patches on each oxygenase domain. One of these corresponds with a presumptive docking site for the reductase domain FMN-binding module. The other is proposed to correspond with a docking site for CaM. A model is suggested in which CaM binding and docking position the reductase domains near the oxygenase domains and promote docking of the FMN-binding modules required for electron transfer.


Subject(s)
Calmodulin/metabolism , Calmodulin/pharmacology , Nitric Oxide Synthase Type III/chemistry , Nitric Oxide Synthase Type III/metabolism , Animals , Calmodulin/chemistry , Cattle , Models, Molecular , Oxygenases/chemistry , Oxygenases/metabolism , Protein Conformation/drug effects , Protein Structure, Tertiary , Rats
5.
Biochemistry ; 50(46): 10061-8, 2011 Nov 22.
Article in English | MEDLINE | ID: mdl-21999573

ABSTRACT

We have investigated the roles played by the calmodulin (CaM) N- and C-lobes in establishing the conformations of CaM-IQ domain complexes in different Ca(2+)-free and Ca(2+)-bound states. Our results indicate a dominant role for the C-lobe in these complexes. When the C-lobe is Ca(2+)-free, it directs the N-lobe to a binding site within the IQ domain consensus sequence. It appears that the N-lobe must be Ca(2+)-free to interact productively with this site. When the C-lobe is Ca(2+)-bound, it directs the N-lobe to a site upstream of the consensus sequence, and it appears that the N-lobe must be Ca(2+)-bound to interact productively with this site. A model for switching in CaM-IQ domain complexes is presented in which the N-lobe adopts bound and extended positions that depend on the status of the Ca(2+)-binding sites in each CaM lobe and the compositions of the two N-lobe binding sites. Ca(2+)-dependent changes in the conformation of the bound C-lobe that appear to be responsible for directed N-lobe binding are also identified. Changes in the equilibria between extended and bound N-lobe positions may control bridging interactions in which the extended N-lobe is bound to another CaM-binding domain. Ca(2+)-dependent control of bridging interactions with CaM has been implicated in the regulation of ion channel and unconventional myosin activities.


Subject(s)
Calcium/metabolism , Calmodulin/metabolism , Amino Acid Sequence , Animals , Binding Sites , Calmodulin/chemistry , Humans , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Structure, Tertiary
6.
Biochemistry ; 49(1): 78-83, 2010 Jan 12.
Article in English | MEDLINE | ID: mdl-19954189

ABSTRACT

We have replaced the semiconserved Gly in the IQ domain consensus sequence with Ala, Arg, or Met in a reference sequence and determined how this affects its complexes with calmodulin. The K(d) for the Ca(2+)-free reference complex is 2.4 +/- 0.3 microM. The Ala and Arg replacements increase this to 5.4 +/- 0.4 and 6.2 +/- 0.5 microM, while the Met increases it to 26.4 +/- 2.5 microM. When Ca(2+) is bound to both calmodulin lobes, the K(d) for the reference complex is not significantly affected, but the K(d) for the Ala variant decreases to 0.9 +/- 0.04 microM, and the values for the Arg and Met variants decrease to 0.4 +/- 0.03 microM. Using mutant calmodulins, we defined the effect of Ca(2+) binding to each lobe, with the C-terminal preceding the N-terminal (C-->N) or vice versa (N-->C). In the C-->N order the first step increases the reference K(d) approximately 5-fold, while it decreases the values for the variants approximately 2- to approximately 10-fold. The second step decreases the K(d) values for the all of the complexes approximately 5-fold, suggesting that the N-terminal lobe does not interact with the semiconserved position after the first step. In the N-->C order the first step increases the K(d) values for the reference complex and Met and Ala variants approximately 15- to approximately 200-fold but does not affect the value for the Arg variant. The second step decreases the K(d) values for the reference and Arg variant approximately 10- and approximately 15-fold and the Ala and Met variants approximately 2000-fold. Thus, both steps in the N-->C order are sensitive to variations at the semiconserved position, while only the first is in the C-->N order. Due to energy coupling, this order is followed under equilibrium conditions.


Subject(s)
Calcium/metabolism , Calmodulin/chemistry , Glycine/genetics , Amino Acid Sequence , Binding Sites , Calcium/chemistry , Calmodulin/metabolism , Conserved Sequence , Glycine/metabolism , Kinetics , Molecular Sequence Data , Protein Structure, Tertiary , Thermodynamics
7.
Biochemistry ; 48(49): 11766-72, 2009 Dec 15.
Article in English | MEDLINE | ID: mdl-19877718

ABSTRACT

The affinities of Ca(2+)-saturated and Ca(2+)-free calmodulin for a fluorescent reporter construct containing the PEP19 IQ domain differ by a factor of approximately 100, with K(d) values of 11.0 +/- 1.2 and 1128.4 +/- 176.5 muM, respectively, while the affinities of a reporter containing the neuromodulin IQ domain are essentially identical, with K(d) values of 2.9 +/- 0.3 and 2.4 +/- 0.3 muM, respectively. When Ca(2+) is bound only to the C-terminal pair of Ca(2+)-binding sites in calmodulin, the K(d) value for the PEP19 reporter complex is decreased approximately 5-fold, while the value for the neuromodulin reporter complex is increased by the same factor. When Ca(2+) is bound only to the N-terminal pair of Ca(2+)-binding sites, the K(d) value for the PEP19 reporter complex is unaffected, but the value for the complex with the neuromodulin reporter is increased approximately 12-fold. These functional differences are largely ascribed to three differences in the CaM-binding sequences of the two reporters. Replacement of a central Gly in the neuromodulin IQ domain with a Lys at this position in PEP19 almost entirely accounts for the distinctive patterns of Ca(2+)-dependent stability changes exhibited by the two complexes. Replacement of a Lys immediately before the "IQ" amino acid pair in the neuromodulin sequence with the Ala in PEP19 accounts for the remaining Ca(2+)-dependent differences. Replacement of an Ala in the N-terminal half of the neuromodulin sequence with the Gln in PEP19 accounts for approximately half of the Ca(2+)-independent difference in the stabilities of the two reporter complexes, with the Ca(2+)-independent effect of the Lys replacement accounting for most of the remainder. Since the central Gly in the neuromodulin sequence is conserved in half of all known IQ domains, these results suggest that the presence or absence of this residue defines two major functional classes.


Subject(s)
EF Hand Motifs/physiology , GAP-43 Protein/chemistry , GAP-43 Protein/classification , Nerve Tissue Proteins/chemistry , Nerve Tissue Proteins/classification , ras GTPase-Activating Proteins/chemistry , ras GTPase-Activating Proteins/classification , Amino Acid Sequence , Amino Acid Substitution/genetics , Calmodulin/chemistry , Calmodulin/genetics , Calmodulin/metabolism , Calmodulin/physiology , EF Hand Motifs/genetics , GAP-43 Protein/genetics , GAP-43 Protein/metabolism , Genes, Reporter/physiology , Glycine/genetics , Humans , Ligands , Lysine/genetics , Molecular Sequence Data , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Protein Binding/genetics , Protein Stability , ras GTPase-Activating Proteins/genetics , ras GTPase-Activating Proteins/metabolism
8.
J Biol Chem ; 284(30): 20041-51, 2009 Jul 24.
Article in English | MEDLINE | ID: mdl-19473981

ABSTRACT

Calmodulin binds to IQ motifs in the alpha(1) subunit of Ca(V)1.1 and Ca(V)1.2, but the affinities of calmodulin for the motif and for Ca(2+) are higher when bound to Ca(V)1.2 IQ. The Ca(V)1.1 IQ and Ca(V)1.2 IQ sequences differ by four amino acids. We determined the structure of calmodulin bound to Ca(V)1.1 IQ and compared it with that of calmodulin bound to Ca(V)1.2 IQ. Four methionines in Ca(2+)-calmodulin form a hydrophobic binding pocket for the peptide, but only one of the four nonconserved amino acids (His-1532 of Ca(V)1.1 and Tyr-1675 of Ca(V)1.2) contacts this calmodulin pocket. However, Tyr-1675 in Ca(V)1.2 contributes only modestly to the higher affinity of this peptide for calmodulin; the other three amino acids in Ca(V)1.2 contribute significantly to the difference in the Ca(2+) affinity of the bound calmodulin despite having no direct contact with calmodulin. Those residues appear to allow an interaction with calmodulin with one lobe Ca(2+)-bound and one lobe Ca(2+)-free. Our data also provide evidence for lobe-lobe interactions in calmodulin bound to Ca(V)1.2.


Subject(s)
Calcium Channels, L-Type/chemistry , Calcium Channels, L-Type/metabolism , Calcium/metabolism , Calmodulin/metabolism , Peptides/chemistry , Amino Acid Motifs , Amino Acid Sequence , Animals , Calcium/chemistry , Calmodulin/chemistry , Calmodulin/genetics , Crystallography, X-Ray , Humans , Mammals , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Peptides/metabolism , Protein Binding , Protein Conformation
9.
J Biol Chem ; 284(18): 11892-9, 2009 May 01.
Article in English | MEDLINE | ID: mdl-19251696

ABSTRACT

We have investigated the possible biochemical basis for enhancements in NO production in endothelial cells that have been correlated with agonist- or shear stress-evoked phosphorylation at Ser-1179. We have found that a phosphomimetic substitution at Ser-1179 doubles maximal synthase activity, partially disinhibits cytochrome c reductase activity, and lowers the EC(50)(Ca(2+)) values for calmodulin binding and enzyme activation from the control values of 182 +/- 2 and 422 +/- 22 nm to 116 +/- 2 and 300 +/- 10 nm. These are similar to the effects of a phosphomimetic substitution at Ser-617 (Tran, Q. K., Leonard, J., Black, D. J., and Persechini, A. (2008) Biochemistry 47, 7557-7566). Although combining substitutions at Ser-617 and Ser-1179 has no additional effect on maximal synthase activity, cooperativity between the two substitutions completely disinhibits reductase activity and further reduces the EC(50)(Ca(2+)) values for calmodulin binding and enzyme activation to 77 +/- 2 and 130 +/- 5 nm. We have confirmed that specific Akt-catalyzed phosphorylation of Ser-617 and Ser-1179 and phosphomimetic substitutions at these positions have similar functional effects. Changes in the biochemical properties of eNOS produced by combined phosphorylation at Ser-617 and Ser-1179 are predicted to substantially increase synthase activity in cells at a typical basal free Ca(2+) concentration of 50-100 nm.


Subject(s)
Calcium/chemistry , Calmodulin/chemistry , Nitric Oxide Synthase Type III/chemistry , Proto-Oncogene Proteins c-akt/chemistry , Amino Acid Substitution , Animals , Calcium/metabolism , Calmodulin/genetics , Calmodulin/metabolism , Cattle , Cytochrome Reductases/chemistry , Cytochrome Reductases/genetics , Cytochrome Reductases/metabolism , Humans , Mutation, Missense , Nitric Oxide Synthase Type III/genetics , Nitric Oxide Synthase Type III/metabolism , Phosphorylation/physiology , Protein Binding/physiology , Proto-Oncogene Proteins c-akt/genetics , Proto-Oncogene Proteins c-akt/metabolism , Stress, Physiological/physiology
10.
Biochemistry ; 47(28): 7557-66, 2008 Jul 15.
Article in English | MEDLINE | ID: mdl-18558722

ABSTRACT

We have investigated the effects of phosphorylation at Ser-617 and Ser-635 within an autoinhibitory domain (residues 595-639) in bovine endothelial nitric oxide synthase on enzyme activity and the Ca (2+) dependencies for calmodulin binding and enzyme activation. A phosphomimetic S617D substitution doubles the maximum calmodulin-dependent enzyme activity and decreases the EC 50(Ca (2+)) values for calmodulin binding and enzyme activation from the wild-type values of 180 +/- 2 and 397 +/- 23 nM to values of 109 +/- 2 and 258 +/- 11 nM, respectively. Deletion of the autoinhibitory domain also doubles the maximum calmodulin-dependent enzyme activity and decreases the EC 50(Ca (2+)) values for calmodulin binding and calmodulin-dependent enzyme activation to 65 +/- 4 and 118 +/- 4 nM, respectively. An S635D substitution has little or no effect on enzyme activity or EC 50(Ca (2+)) values, either alone or when combined with the S617D substitution. These results suggest that phosphorylation at Ser-617 partially reverses suppression by the autoinhibitory domain. Associated effects on the EC 50(Ca (2+)) values and maximum calmodulin-dependent enzyme activity are predicted to contribute equally to phosphorylation-dependent enhancement of NO production during a typical agonist-evoked Ca (2+) transient, while the reduction in EC 50(Ca (2+)) values is predicted to be the major contributor to enhancement at resting free Ca (2+) concentrations.


Subject(s)
Calcium/metabolism , Calmodulin/metabolism , Nitric Oxide Synthase Type III/antagonists & inhibitors , Nitric Oxide Synthase Type III/metabolism , Animals , Binding Sites , Cattle , Cloning, Molecular , DNA Primers , Kinetics , Mutagenesis , Nitric Oxide Synthase Type III/genetics , Phosphoproteins/metabolism , Phosphorylation , Protein Binding , Recombinant Proteins/metabolism
11.
Biochemistry ; 46(46): 13415-24, 2007 Nov 20.
Article in English | MEDLINE | ID: mdl-17958378

ABSTRACT

We have performed a kinetic analysis of Ca2+-dependent switching in the complex between calmodulin (CaM) and the IQ domain from neuromodulin, and have developed detailed kinetic models for this process. Our results indicate that the affinity of the C-ter Ca2+-binding sites in bound CaM is reduced due to a approximately 10-fold decrease in the Ca2+ association rate, while the affinity of the N-ter Ca2+-binding sites is increased due to a approximately 3-fold decrease in the Ca2+ dissociation rate. Although the Ca2+-free and Ca2+-saturated forms of the CaM-IQ domain complex have identical affinities, CaM dissociates approximately 100 times faster in the presence of Ca2+. Furthermore, under these conditions CaM can be transferred to the CaM-binding domain from CaM kinase II via a ternary complex. These properties are consistent with the hypothesis that CaM bound to neuromodulin comprises a localized store that can be efficiently delivered to neuronal proteins in its Ca2+-bound form in response to a Ca2+ signal.


Subject(s)
Calcium/chemistry , Calmodulin/chemistry , Binding Sites , Calcium/metabolism , Calcium-Calmodulin-Dependent Protein Kinase Type 2/chemistry , Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism , Calmodulin/genetics , Calmodulin/metabolism , Calmodulin-Binding Proteins/chemistry , Calmodulin-Binding Proteins/metabolism , Kinetics , Protein Conformation
12.
Biochemistry ; 45(22): 6987-95, 2006 Jun 06.
Article in English | MEDLINE | ID: mdl-16734434

ABSTRACT

The relationship between the free Ca2+ concentration and the apparent dissociation constant for the complex between calmodulin (CaM) and the neuromodulin IQ domain consists of two phases. In the first phase, Ca2+ bound to the C-ter EF hand pair in CaM increases the Kd for the complex from the Ca2+-free value of 2.3 +/- 0.1 microM to a value of 14.4 +/- 1.3 microM. In the second phase, Ca2+ bound to the N-ter EF hand pair reduces the Kd for the complex to a value of 2.5 +/- 0.1 microM, reversing the effect of the first phase. Due to energy coupling effects associated with these phases, the mean dissociation constant for binding of Ca2+ to the C-ter EF hand pair is increased approximately 3-fold, from 1.8 +/- 0.1 to 5.1 +/- 0.7 microM, and the mean dissociation constant for binding of Ca2+ to the N-ter EF hand pair is decreased by the same factor, from 11.2 +/- 1.0 to 3.5 +/- 0.6 microM. These characteristics produce a bell-shaped relationship between the apparent dissociation constant for the complex and the free Ca2+ concentration, with a distance of 5-6 microM between the midpoints of the rising and falling phases. Release of CaM from the neuromodulin IQ domain therefore appears to be promoted over a relatively narrow range of free Ca2+ concentrations. Our results demonstrate that CaM-IQ domain complexes can function as biphasic Ca2+ switches through opposing effects of Ca2+ bound sequentially to the two EF hand pairs in CaM.


Subject(s)
Calcium/chemistry , Calmodulin-Binding Proteins/chemistry , Calmodulin/chemistry , GAP-43 Protein/chemistry , Calmodulin/genetics , Mutation , Protein Conformation , Protein Structure, Tertiary
13.
Cell Calcium ; 37(6): 541-53, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15862345

ABSTRACT

In endothelial cells nitric oxide synthase is a dominant affector in the calmodulin network by virtue of its ability to bind a significant fraction of limiting intracellular calmodulin. We have investigated how this affector function influences the kinetics of calmodulin-dependent signaling in cells co-expressing the synthase and a fluorescent calmodulin target analog similar in its interactions with calmodulin to myosin light chain kinase. The synthase binds (Ca(2+))(4)-calmodulin with a K(d) value of approximately 0.2 nM and an association rate constant of approximately 1.5 x 10(5) M(-1) s(-1). These values are, respectively, 10- and 100-fold smaller than the corresponding values for the analog. Thus, when Ca(2+) is added to a mixture of calmodulin, target analog and synthase in vitro a large fluorescence transient with a relaxation time of approximately 600 s is observed as (Ca(2+))(4)-calmodulin is rapidly bound to the analog and then slowly captured by the higher affinity synthase. A rapid increase in the free Ca(2+) concentration elicits similar transient analog responses in cells expressing the cytoplasmic target analog and either a wild-type membrane bound or mutant cytoplasmic synthase. Transient responses are not observed in cells co-expressing the fluorescent analog and a mutant T497D synthase unable to bind calmodulin. These results demonstrate that dominant affectors in the calmodulin network shape both the magnitudes and time courses of target responses in the cell.


Subject(s)
Calmodulin/metabolism , Nitric Oxide Synthase/metabolism , Signal Transduction , Animals , Cattle , Cell Line , Fluorescent Dyes , Kinetics , Myosin-Light-Chain Kinase/metabolism , Nitric Oxide Synthase Type III , Protein Binding , Recombinant Fusion Proteins/metabolism , Transfection
14.
Am J Physiol Cell Physiol ; 288(3): C669-76, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15496482

ABSTRACT

Calmodulin (CaM) functions as a Ca(2+) sensor for inactivation and, in some cases, facilitation of a variety of voltage-dependent Ca(2+) channels. A crucial determinant for CaM binding to these channels is the IQ motif in the COOH-terminal tail of the channel-forming subunit. The binding of CaM to IQ peptides from Lc-, P/Q-, and R-type, but not N-type, voltage-dependent Ca(2+) channels increases the Ca(2+) affinity of both lobes of CaM, producing similar N- and C-lobe Ca(2+) affinities. Ca(2+) associates with and dissociates from the N-lobe much more rapidly than the C-lobe when CaM is bound to the IQ peptides. Compared with the other IQ peptides, CaM-bound Lc-IQ has the highest Ca(2+) affinity and the most rapid rates of Ca(2+) association at both lobes, which is likely to make Ca(2+) binding to CaM, bound to this channel, less sensitive than other channels to intracellular Ca(2+) buffers. These kinetic differences in Ca(2+) binding to the lobes of CaM when bound to the different IQ motifs may explain both the ability of CaM to perform multiple functions in these channels and the differences in CaM regulation of the different voltage-dependent Ca(2+) channels.


Subject(s)
Amino Acid Sequence , Calcium Channels/metabolism , Calmodulin/metabolism , Peptides/metabolism , Aminoquinolines/metabolism , Animals , Calcium/metabolism , Calcium Channels/genetics , Calmodulin/chemistry , Calmodulin/genetics , Cattle , Fluorescent Dyes/metabolism , Humans , Molecular Sequence Data , Protein Binding , Protein Conformation , Protein Subunits/genetics , Protein Subunits/metabolism , Sequence Alignment , Tryptophan/metabolism
15.
Cell Calcium ; 35(5): 415-25, 2004 May.
Article in English | MEDLINE | ID: mdl-15003851

ABSTRACT

We describe the design, characterization and application of a new genetically encoded fluorescent biosensor for intracellular detection of both free Ca(2+)-calmodulin and apocalmodulin, which together comprise the available calmodulin concentration. The biosensor binds both forms of calmodulin with an apparent Kd value of 3 microM, and has kinetic properties making it suitable for monitoring dynamic changes on a subsecond time scale. It can be used in conjunction with the fluorescent Ca(2+)-indicator, indo-1, allowing the available calmodulin and free Ca2+ concentrations to be monitored concurrently. We have determined an intracellular available calmodulin concentration of 8.8 +/- 2.2 microM under resting conditions in a human kidney cell line stably expressing the biosensor. Elevation of the intracellular free Ca2+ concentration by agonist, store-operated Ca(2+)-entry or ionophore results in Ca(2+)-dependent consumption of the available calmodulin. A plot of normalized values for the available calmodulin concentration versus the free Ca2+ concentration fits a consumption curve with a cooperativity coefficient of 1.8 and a [Ca2+]50 of 850 nM. There is no detectible binding of calmodulin to the biosensor above a free Ca2+ concentration of approximately 4 microM, consistent with an available calmodulin concentration < or = 200 nM under these conditions, and an overall excess of calmodulin-binding sites.


Subject(s)
Biosensing Techniques , Calcium/analysis , Calmodulin/analysis , Biosensing Techniques/methods , Calcium/metabolism , Calcium Channel Blockers/pharmacology , Calmodulin/metabolism , Cell Line , Humans , Indoles , Kinetics , Luminescent Proteins , Protein Binding/drug effects , Recombinant Fusion Proteins , Sensitivity and Specificity
16.
Biophys J ; 85(3): 1538-47, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12944271

ABSTRACT

The cardiac L-type voltage-dependent calcium channel is responsible for initiating excitation-contraction coupling. Three sequences (amino acids 1609-1628, 1627-1652, and 1665-1685, designated A, C, and IQ, respectively) of its alpha(1) subunit contribute to calmodulin (CaM) binding and Ca(2+)-dependent inactivation. Peptides matching the A, C, and IQ sequences all bind Ca(2+)CaM. Longer peptides representing A plus C (A-C) or C plus IQ (C-IQ) bind only a single molecule of Ca(2+)CaM. Apocalmodulin (ApoCaM) binds with low affinity to the IQ peptide and with higher affinity to the C-IQ peptide. Binding to the IQ and C peptides increases the Ca(2+) affinity of the C-lobe of CaM, but only the IQ peptide alters the Ca(2+) affinity of the N-lobe. Conversion of the isoleucine and glutamine residues of the IQ motif to alanines in the channel destroys inactivation (Zühlke et al., 2000). The double mutation in the peptide reduces the interaction with apoCaM. A mutant CaM unable to bind Ca(2+) at sites 3 and 4 (which abolishes the ability of CaM to inactivate the channel) binds to the IQ, but not to the C or A peptide. Our data are consistent with a model in which apoCaM binding to the region around the IQ motif is necessary for the rapid binding of Ca(2+) to the C-lobe of CaM. Upon Ca(2+) binding, this lobe is likely to engage the A-C region.


Subject(s)
Calcium Channels, L-Type/chemistry , Calcium/chemistry , Calmodulin/chemistry , Alanine/chemistry , Animals , Binding Sites , Calcium/metabolism , Calcium Channels, L-Type/metabolism , Calmodulin/genetics , Cattle , Dose-Response Relationship, Drug , Electrophoresis, Gel, Two-Dimensional , Electrophoresis, Polyacrylamide Gel , Glutamine/chemistry , Isoleucine/chemistry , Mutation , Peptides/chemistry , Protein Binding , Protein Structure, Tertiary , Spectrometry, Fluorescence
17.
J Biol Chem ; 278(27): 24247-50, 2003 Jul 04.
Article in English | MEDLINE | ID: mdl-12738782

ABSTRACT

Measurements of cellular Ca2+-calmodulin concentrations have suggested that competition for limiting calmodulin may couple calmodulin-dependent activities. Here we have directly tested this hypothesis. We have found that in endothelial cells the amount of calmodulin bound to nitric-oxide synthase and the catalytic activity of the enzyme both are increased approximately 3-fold upon changes in the phosphorylation status of the enzyme. Quantitative immunoblotting indicates that the synthase can bind up to 25% of the total cellular calmodulin. Consistent with this, simultaneous determinations of the free Ca2+ and Ca2+-calmodulin concentrations in these cells performed using indo-1 and a fluorescent calmodulin biosensor (Kd = 2 nm) indicate that increased binding of calmodulin to the synthase is associated with substantial reductions in the Ca2+-calmodulin concentrations produced and an increase in the [Ca2+]50 for formation of the calmodulin-biosensor complex. The physiological significance of these effects is confirmed by a corresponding 40% reduction in calmodulin-dependent plasma membrane Ca2+ pump activity. An identical reduction in pump activity is produced by expression of a high affinity (Kd = 0.3 nm) calmodulin biosensor, and treatment to increase calmodulin binding to the synthase then has no further effect. This suggests that the observed reduction in pump activity is due specifically to reduced calmodulin availability. Increases in synthase activity thus appear to be coupled to decreases in the activities of other calmodulin targets through reductions in the size of a limiting pool of available calmodulin. This exemplifies what is likely to be a ubiquitous mechanism for coupling among diverse calmodulin-dependent activities.


Subject(s)
Calcium/metabolism , Calmodulin/metabolism , Nitric Oxide Synthase/metabolism , Animals , Cattle , Cells, Cultured , Endothelium, Vascular/metabolism , Ion Transport , Nitric Oxide Synthase Type III , Protein Binding
18.
Biochemistry ; 42(9): 2740-7, 2003 Mar 11.
Article in English | MEDLINE | ID: mdl-12614169

ABSTRACT

Calmodulin (CaM) may function as a regulatory subunit of ryanodine receptor (RYR) channels, modulating both channel activation and inhibition by Ca2+; however, mechanisms underlying differences in CaM regulation of the RYR isoforms expressed in skeletal muscle (RYR1) and cardiac muscle (RYR2) are poorly understood. Here we use a series of CaM mutants deficient in Ca2+ binding to compare determinants of CaM regulation of the RYR1 and RYR2 isoforms. In submicromolar Ca2+, activation of the RYR1 isoform by each of the single-point CaM mutants was similar to that by wild-type apoCaM, whereas in micromolar Ca2+, RYR1 inhibition by Ca2+CaM was abolished by mutations targeting CaM's C-terminal Ca2+ sites. In contrast to the RYR1, no activation of the cardiac RYR2 isoform by wild-type CaM was observed, but rather CaM inhibited the RYR2 at all Ca2+ concentrations (100 nM to 1 mM). Consequently, whereas the apparent Ca2+ sensitivity of the RYR1 isoform was enhanced in the presence of CaM, the RYR2 displayed the opposite response (RYR2 Ca2+ EC50 increased 7-10-fold in the presence of 5 microM wild-type CaM). CaM inhibition of the RYR2 was nonetheless abolished by each of four mutations targeting individual CaM Ca2+ sites. Furthermore, a mutant CaM deficient in Ca2+ binding at all four Ca2+ sites significantly activated the RYR2 and acted as a competitive inhibitor of RYR2 regulation by wild-type Ca2+CaM. We conclude that Ca2+ binding to CaM determines the effect of CaM on both RYR1 and RYR2 channels and that isoform differences in CaM regulation reflect the differential tuning of Ca2+ binding sites on CaM when bound to the different RYRs. These results thus suggest a novel mechanism by which CaM may contribute to functional diversity among the RYR isoforms.


Subject(s)
Calcium/chemistry , Calmodulin/chemistry , Mutagenesis, Site-Directed , Ryanodine Receptor Calcium Release Channel/chemistry , Ryanodine Receptor Calcium Release Channel/metabolism , Alanine/genetics , Animals , Calcium Channel Blockers/chemistry , Calmodulin/genetics , Glutamic Acid/genetics , Muscle, Skeletal/chemistry , Muscle, Skeletal/metabolism , Myocardium/chemistry , Myocardium/metabolism , Point Mutation , Protein Isoforms/antagonists & inhibitors , Protein Isoforms/chemistry , Protein Isoforms/metabolism , Rats , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Swine
19.
J Biol Chem ; 278(18): 15615-21, 2003 May 02.
Article in English | MEDLINE | ID: mdl-12586832

ABSTRACT

Calmodulin (CaM) binds to the skeletal muscle ryanodine receptor Ca(2+) release channel (RyR1) with high affinity, and it may act as a Ca(2+)-sensing subunit of the channel. Apo-CaM increases RyR1 channel activity, but Ca(2+)-CaM is inhibitory. Here we examine the functional effects of CaM oxidation on RyR1 regulation by both apo-CaM and Ca(2+)-CaM, as assessed via determinations of [(3)H]ryanodine and [(35)S]CaM binding to skeletal muscle sarcoplasmic reticulum vesicles. Oxidation of all nine CaM Met residues abolished functional interactions of CaM with RyR1. Incomplete CaM oxidation, affecting 5-8 Met residues, increased the CaM concentration required to modulate RyR1, having a greater effect on the apo-CaM species. Mutating individual CaM Met residues to Gln demonstrated that Met-109 was required for apo-CaM activation of RyR1 but not for Ca(2+)-CaM inhibition of the channel. Furthermore, substitution of Gln for Met-124 increased the apo- and Ca(2+)-CaM concentrations required to regulate RyR1. These results thus identify Met residues critical for the productive association of CaM with RyR1 channels and suggest that oxidation of CaM may contribute to altered regulation of sarcoplasmic reticulum Ca(2+) release during oxidative stress.


Subject(s)
Calmodulin/chemistry , Calmodulin/metabolism , Ryanodine Receptor Calcium Release Channel/metabolism , Animals , Calcium/metabolism , Circular Dichroism , Electrophoresis, Polyacrylamide Gel , Glutamine , Mass Spectrometry , Methionine , Oxidation-Reduction , Sarcoplasmic Reticulum/metabolism , Structure-Activity Relationship , Swine
20.
Biochemistry ; 40(11): 3348-53, 2001 Mar 20.
Article in English | MEDLINE | ID: mdl-11258955

ABSTRACT

To follow Mg2+ binding to the N-terminal of calmodulin (CaM), we substituted Phe in position 19, which immediately precedes the first Ca2+/Mg2+ binding loop, with Trp, thus making F19WCaM (W-Z). W-Z has four acidic residues in chelating positions, two of which form a native Z-acid pair. We then generated seven additional N-terminal CaM mutants to examine the role of chelating acidic residues in Mg2+ binding and exchange with the first EF-hand of CaM. A CaM mutant with acidic residues in all of the chelating positions exhibited Mg2+ affinity similar to that of W-Z. Only CaM mutants that had a Z-acid pair were able to bind Mg2+ with physiologically relevant affinities. Removal of the Z-acid pair from the first EF-hand produced a dramatic 58-fold decrease in its Mg2+ affinity. Additionally, removal of the Z-acid pair led to a 1.8-fold increase in the rate of Mg2+ dissociation. Addition of an X- or Y-acid pair could not restore the high Mg2+ binding lost with removal of the Z-acid pair. Therefore, the Z-acid pair in the first EF-hand of CaM supports high Mg2+ binding primarily by increasing the rate of Mg2+ association.


Subject(s)
Calmodulin/metabolism , Magnesium/metabolism , Peptide Fragments/metabolism , Amino Acid Substitution/genetics , Animals , Binding Sites/genetics , Calmodulin/chemical synthesis , Calmodulin/genetics , EF Hand Motifs/genetics , Kinetics , Mutagenesis, Site-Directed , Peptide Fragments/chemical synthesis , Peptide Fragments/genetics , Phenylalanine/genetics , Rats , Recombinant Proteins/chemical synthesis , Recombinant Proteins/metabolism , Spectrometry, Fluorescence , Tryptophan/genetics
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