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1.
J Anim Ecol ; 2024 Apr 21.
Article in English | MEDLINE | ID: mdl-38644583

ABSTRACT

Ecological similarity plays an important role in biotic interactions. Increased body size similarity of competing species, for example, increases the strength of their biotic interactions. Body sizes of many exothermic species are forecast to be altered under global warming, mediating shifts in existing trophic interactions among species, in particular for species with different thermal niches. Temperate rocky reefs along the southeast coast of Australia are located in a climate warming hotspot and now house a mixture of temperate native fish species and poleward range-extending tropical fishes (vagrants), creating novel species assemblages. Here, we studied the relationship between body size similarity and trophic overlap between individual temperate native and tropical vagrant fishes. Dietary niche overlap between vagrant and native fish species increased as their body sizes converged, based on both stomach content composition (short-term diet), stable isotope analyses (integrated long-term diet) and similarity in consumed prey sizes. We conclude that the warming-induced faster growth rates of tropical range-extending fish species at their cool water ranges will continue to converge their body size towards and strengthen their degree of trophic interactions and dietary overlap with co-occurring native temperate species under increasing ocean warming. The strengthening of these novel competitive interactions is likely to drive changes to temperate food web structures and reshuffle existing species community structures.

2.
Proc Biol Sci ; 291(2015): 20232206, 2024 Jan 31.
Article in English | MEDLINE | ID: mdl-38290546

ABSTRACT

Climate-driven species redistributions are facilitated by niche modifications that increase a species's chances of establishment in novel communities. It is well understood how range-extending species adjust individual niche traits when entering novel environments, yet whether modification of ecological niche traits collectively alters the pace of range extensions or contractions remains unknown. We quantified habitat niche, abundance, physiological performance and cellular defence/damage of range-extending coral reef fishes and coexisting local temperate fishes along a 2000 km latitudinal gradient. We also assessed their dietary and behavioural niches, and establishment potential, to understand whether ecological generalism facilitates successful range extension of coral reef fishes. The coral reef fish that increased all ecological niches, showed stronger establishment, increased physiological performance and cellular damage, but decreased cellular defence at their cold-range edge, whereas tropical species that showed unmodified ecological niches showed lower establishment. One temperate species showed decreased abundance, habitat niche width and body condition, but increased cellular defence, cellular damage and energy reserves at their warm-trailing range, while other temperate species showed contrasting responses. Therefore, ecological generalists might be more successful than ecological specialists during the initial stages of climate change, with increasing future warming strengthening this pattern by physiologically benefitting tropical generalists but disadvantaging temperate specialists.


Subject(s)
Anthozoa , Ecosystem , Animals , Coral Reefs , Fishes/physiology , Climate Change , Oceans and Seas
3.
J Fish Biol ; 104(3): 878-882, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37903718

ABSTRACT

This study assessed the otolith (sagittae, lapilli, and asterisci) increment deposition rate in the range-shifting damselfish, A. vaigiensis, using different concentrations of Alizain Red S and evaluated the impact of staining on increment width. Daily increment deposition was verified in all otolith types and presented clearer fluorescent markings in the lapilli and sagittae than the asterisci, with high stain concentration showing the best clarity. Higher stain concentrations were found to decrease increment width, suggesting care is needed when using stained otoliths as a proxy for growth for this species.


Subject(s)
Otolithic Membrane , Perciformes , Animals , Staining and Labeling , Coloring Agents , Demography
4.
Sci Total Environ ; 913: 169413, 2024 Feb 25.
Article in English | MEDLINE | ID: mdl-38114039

ABSTRACT

Global warming facilitates species range-expansions, leading to novel biological interactions between local and range-expanding species. Little is still known of how such novel interactions modify the performance of interacting species or how these interactions might be altered under climate change. Here, we used an aquarium experiment to investigate the novel ecological interactions between a poleward range-extending coral reef damselfish ("tropical-vagrant") and a local temperate species ("temperate-local") collected from a climate warming hotspot in SE Australia. We measured the effect of novel interactions (isolated vs. paired fish species) on energy expenditure (activity levels, oxidative stress, and antioxidant responses), energy gain (feeding rates), and growth rates of both fish species under present-day (23 °C) and future ocean temperatures (26 °C). Short-term growth rates were faster in both species under novel interactions (paired species), regardless of elevated temperature. Compared to isolated species, activity level, feeding rate and oxidative stress level were also higher in the paired temperate fish but not in the paired tropical fish. The tropical fish showed an increased feeding rate and long-term growth under elevated temperature, irrespective of novel interactions. We conclude that novel ecological interactions under climate change can be an important driver of physiological traits in sympatric tropical and temperate fishes and can mediate critical physiological performance of fishes under ocean warming.


Subject(s)
Coral Reefs , Fishes , Animals , Fishes/physiology , Climate Change , Global Warming , Temperature , Oceans and Seas
5.
Nat Commun ; 14(1): 5368, 2023 09 04.
Article in English | MEDLINE | ID: mdl-37666831

ABSTRACT

Sustainably managing fisheries requires regular and reliable evaluation of stock status. However, most multispecies reef fisheries around the globe tend to lack research and monitoring capacity, preventing the estimation of sustainable reference points against which stocks can be assessed. Here, combining fish biomass data for >2000 coral reefs, we estimate site-specific sustainable reference points for coral reef fisheries and use these and available catch estimates to assess the status of global coral reef fish stocks. We reveal that >50% of sites and jurisdictions with available information have stocks of conservation concern, having failed at least one fisheries sustainability benchmark. We quantify the trade-offs between biodiversity, fish length, and ecosystem functions relative to key benchmarks and highlight the ecological benefits of increasing sustainability. Our approach yields multispecies sustainable reference points for coral reef fisheries using environmental conditions, a promising means for enhancing the sustainability of the world's coral reef fisheries.


Subject(s)
Coral Reefs , Fisheries , Animals , Benchmarking , Biodiversity , Ecosystem
6.
Sci Total Environ ; 883: 163684, 2023 Jul 20.
Article in English | MEDLINE | ID: mdl-37100135

ABSTRACT

Climate change can directly (physiology) and indirectly (novel species interactions) modify species responses to novel environmental conditions during the initial stages of range shifts. Whilst the effects of climate warming on tropical species at their cold-water leading ranges are well-established, it remains unclear how future seasonal temperature changes, ocean acidification, and novel species interactions will alter the physiology of range-shifting tropical and competing temperate fish in recipient ecosystems. Here we used a laboratory experiment to examine how ocean acidification, future summer vs winter temperatures, and novel species interactions could affect the physiology of competing temperate and range-extending coral reef fish to determine potential range extension outcomes. In future winters (20 °C + elevated pCO2) coral reef fish at their cold-water leading edges showed reduced physiological performance (lower body condition and cellular defence, and higher oxidative damage) compared to present-day summer (23 °C + control pCO2) and future summer conditions (26 °C + elevated pCO2). However, they showed a compensatory effect in future winters through increased long-term energy storage. Contrastingly, co-shoaling temperate fish showed higher oxidative damage, and reduced short-term energy storage and cellular defence in future summer than in future winter conditions at their warm-trailing edges. However, temperate fish benefitted from novel shoaling interactions and showed higher body condition and short-term energy storage when shoaling with coral reef fish compared to same-species shoaling. We conclude that whilst during future summers, ocean warming will likely benefit coral reef fishes extending their ranges, future winter conditions may still reduce coral reef fish physiological functioning, and may therefore slow their establishment at higher latitudes. In contrast, temperate fish species benefit from co-shoaling with smaller-sized tropical fishes, but this benefit may dissipate due to their reduced physiological functioning under future summer temperatures and increasing body sizes of co-shoaling tropical species.


Subject(s)
Coral Reefs , Ecosystem , Animals , Temperature , Water , Hydrogen-Ion Concentration , Ocean Acidification , Seasons , Seawater , Climate Change , Fishes/physiology
7.
Proc Natl Acad Sci U S A ; 119(43): e2213450119, 2022 10 25.
Article in English | MEDLINE | ID: mdl-36256818

ABSTRACT

Bacterial catabolic pathways have considerable potential as industrial biocatalysts for the valorization of lignin, a major component of plant-derived biomass. Here, we describe a pathway responsible for the catabolism of acetovanillone, a major component of several industrial lignin streams. Rhodococcus rhodochrous GD02 was previously isolated for growth on acetovanillone. A high-quality genome sequence of GD02 was generated. Transcriptomic analyses revealed a cluster of eight genes up-regulated during growth on acetovanillone and 4-hydroxyacetophenone, as well as a two-gene cluster up-regulated during growth on acetophenone. Bioinformatic analyses predicted that the hydroxyphenylethanone (Hpe) pathway proceeds via phosphorylation and carboxylation, before ß-elimination yields vanillate from acetovanillone or 4-hydroxybenzoate from 4-hydroxyacetophenone. Consistent with this prediction, the kinase, HpeHI, phosphorylated acetovanillone and 4-hydroxyacetophenone. Furthermore, HpeCBA, a biotin-dependent enzyme, catalyzed the ATP-dependent carboxylation of 4-phospho-acetovanillone but not acetovanillone. The carboxylase's specificity for 4-phospho-acetophenone (kcat/KM = 34 ± 2 mM-1 s-1) was approximately an order of magnitude higher than for 4-phospho-acetovanillone. HpeD catalyzed the efficient dephosphorylation of the carboxylated products. GD02 grew on a preparation of pine lignin produced by oxidative catalytic fractionation, depleting all of the acetovanillone, vanillin, and vanillate. Genomic and metagenomic searches indicated that the Hpe pathway occurs in a relatively small number of bacteria. This study facilitates the design of bacterial strains for biocatalytic applications by identifying a pathway for the degradation of acetovanillone.


Subject(s)
Biotin , Lignin , Lignin/metabolism , Acetophenones , Adenosine Triphosphate
8.
ISME J ; 16(8): 1944-1956, 2022 08.
Article in English | MEDLINE | ID: mdl-35501417

ABSTRACT

Characterizing microorganisms and enzymes involved in lignin biodegradation in thermal ecosystems can identify thermostable biocatalysts. We integrated stable isotope probing (SIP), genome-resolved metagenomics, and enzyme characterization to investigate the degradation of high-molecular weight, 13C-ring-labeled synthetic lignin by microbial communities from moderately thermophilic hot spring sediment (52 °C) and a woody "hog fuel" pile (53 and 62 °C zones). 13C-Lignin degradation was monitored using IR-GCMS of 13CO2, and isotopic enrichment of DNA was measured with UHLPC-MS/MS. Assembly of 42 metagenomic libraries (72 Gb) yielded 344 contig bins, from which 125 draft genomes were produced. Fourteen genomes were significantly enriched with 13C from lignin, including genomes of Actinomycetes (Thermoleophilaceae, Solirubrobacteraceae, Rubrobacter sp.), Firmicutes (Kyrpidia sp., Alicyclobacillus sp.) and Gammaproteobacteria (Steroidobacteraceae). We employed multiple approaches to screen genomes for genes encoding putative ligninases and pathways for aromatic compound degradation. Our analysis identified several novel laccase-like multi-copper oxidase (LMCO) genes in 13C-enriched genomes. One of these LMCOs was heterologously expressed and shown to oxidize lignin model compounds and minimally transformed lignin. This study elucidated bacterial lignin depolymerization and mineralization in thermal ecosystems, establishing new possibilities for the efficient valorization of lignin at elevated temperature.


Subject(s)
Gammaproteobacteria , Microbiota , Bacteria/genetics , Bacteria/metabolism , Gammaproteobacteria/metabolism , Isotopes/metabolism , Lignin/metabolism , Tandem Mass Spectrometry
9.
J Fish Biol ; 100(6): 1548-1552, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35439333

ABSTRACT

Climate change is driving tropicalisation of temperate reefs, yet it is unclear how range-shifting tropical fishes locate suitable habitat. The authors tested whether juvenile tropical damsels Dascyllus trimaculatus could detect rare coral habitat (Pocillopora aliciae) and conspecifics on temperate rocky reefs using olfactory and visual preference experiments. For all cues, individuals selected and spent more time than expected in aquarium areas with the cue present, which included coral odour and conspecific odour and visual cues. This indicates that vagrant coral-reef fish can detect rare suitable habitat outside of their natal range.


Subject(s)
Anthozoa , Perciformes , Animals , Coral Reefs , Ecosystem , Fishes
10.
Proc Biol Sci ; 289(1971): 20212676, 2022 03 30.
Article in English | MEDLINE | ID: mdl-35317673

ABSTRACT

As climate warms, tropical species are expanding their distribution to temperate ecosystems where they are confronted with novel predators and habitats. Predation strongly regulates ecological communities, and range-extending species that adopt an effective antipredator strategy have a higher likelihood to persist in non-native environments. Here, we test this hypothesis by comparing various proxies of antipredator and other fitness-related behaviours between range-extending tropical fishes and native-temperate fishes at multiple sites across a 730 km latitudinal range. Although some behavioural proxies of risk aversion remained unaltered for individual tropical fish species, in general they became more risk-averse (increased sheltering and/or flight initiation distance), and their activity level decreased poleward. Nevertheless, they did not experience a decline in body condition or feeding rate in their temperate ranges. Temperate fishes did not show a consistently altered pattern in their behaviours across range locations, even though one species increased its flight initiation distance at the warm-temperate location and another one had lowest activity levels at the coldest range location. The maintenance of feeding and bite rate combined with a decreased activity level and increased sheltering may be behavioural strategies adopted by range-extending tropical fishes, to preserve energy and maintain fitness in their novel temperate ecosystems.


Subject(s)
Anthozoa , Ecosystem , Animals , Climate Change , Coral Reefs , Fishes/physiology
11.
J Fish Biol ; 100(4): 935-943, 2022 Apr.
Article in English | MEDLINE | ID: mdl-35229283

ABSTRACT

Habitat associations can be critical predictors of larger-scale organism distributions and range shifts. Here the authors consider how a critical habitat, kelp (Ecklonia radiata) and prey (mysid crustacean swarms), can influence small- and large-scale distribution on the iconic common (weedy) seadragon (Phyllopteryx taeniolatus:Syngnathidae). P. taeniolatus are charismatic fish endemic to the temperate reefs of southern Australia, reported to range from Geraldton, Western Australia (28.7667°S, 114.6167°E) around southern Australia to Port Stephens, New South Wales (32.614369°S, 152.325676°E). The authors test a previously developed model of seadragon habitat preferences to predict P. taeniolatus occurrence within four sites from Sydney to the northern limit of their range in eastern Australia. They determined that P. taeniolatus associations with Ecklonia and mysid shrimp can be extrapolated across multiple sites to predict the occurrence of individual P. taeniolatus within a location/site. For instance, the authors demonstrated a significant positive relationship between the density of mysid swarms and the density of P. taeniolatus, evident across all sites despite large differences in the density of mysid swarms among sites. The findings are the first to model P. taeniolatus habitat associations across multiple sites to the northern limit of their range and have applications in protecting P. taeniolatus populations and how they may respond under climate change scenarios, such as poleward kelp retractions.


Subject(s)
Kelp , Smegmamorpha , Animals , Climate Change , Ecosystem , Seafood
12.
J Fish Biol ; 100(1): 175-183, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34697812

ABSTRACT

The weedy seadragon (Phyllopteryx taeniolatus: Syngnathidae) is an iconic fish endemic to the southern coastal waters of Australia. The authors of this study analysed the habitat preferences and factors influencing microhabitat selection by P. taeniolatus in a population from Kurnell, NSW, Australia. Using field surveys and the resource selection probability function, the authors determined that P. taeniolatus significantly preferred kelp (Ecklonia radiata)-dominated habitat and avoided rock-dominated habitat. They showed P. taeniolatus preferred habitat of between 40% and 80% coverage of Ecklonia, while avoiding areas of <20% cover. Furthermore, across all habitats, mysid prey availability significantly influenced P. taeniolatus habitat selection. The strong dependence of P. taeniolatus on Ecklonia habitat shown in this study was previously untested and highlights that reductions in Ecklonia cover under climate change, or impacts from increasing urbanisation, may render seadragon populations vulnerable to declines.


Subject(s)
Kelp , Smegmamorpha , Animals , Ecosystem , Fishes , Urbanization
13.
J Anim Ecol ; 91(1): 86-100, 2022 01.
Article in English | MEDLINE | ID: mdl-34606086

ABSTRACT

Coral-reef fishes are shifting their distributions poleward in response to human-mediated ocean warming; yet, the consequences for recipient temperate fish communities remain poorly understood. Behavioural modification is often the first response of species to environmental change, but we know little about how this might shape the ongoing colonisation by tropical fishes of temperate-latitude ecosystems under climate change. In a global hotspot of ocean warming (southeast Australia), we quantified 14 behavioural traits of invading tropical and local co-occurring temperate fishes at 10 sites across a 730 km latitudinal gradient as a proxy of species behavioural niche space in different climate ranges (subtropical, warm-temperate and cold-temperate). We found that tropical fishes (four species) modified their behavioural niches as well as increased their overall behavioural niche breadth in their novel temperate ranges where temperate species predominate, but maintained a moderate to high niche segregation with native temperate species across latitudinal range position. Temperate species (three co-occurring species) also modified their niches, but in contrast to tropical species, experienced an increased niche breadth towards subtropical ranges. Alterations to feeding and shoaling behaviours contributed most to niche modifications in tropical and temperate species, while behaviours related to alertness and escape from potential threats contributed least. We here show that at warmer and colder range edges where community structures are being reshuffled due to climate change, behavioural generalism and niche modification are potential mechanisms adopted by tropical range extenders and native temperate fishes to adjust to novel species interactions under climate change.


Subject(s)
Climate Change , Ecosystem , Animals , Coral Reefs , Fishes/physiology , Phenotype , Tropical Climate
14.
Glob Chang Biol ; 28(4): 1388-1401, 2022 02.
Article in English | MEDLINE | ID: mdl-34918444

ABSTRACT

Gregarious behaviours are common in animals and provide various benefits such as food acquisition and protection against predators. Many gregarious tropical species are shifting poleward under current ocean warming, creating novel species and social interactions with local temperate taxa. However, how the dynamics of these novel shoals might be altered by future ocean warming and acidification remains untested. Here we evaluate how novel species interactions, ocean acidification and warming affect shoaling dynamics, motor lateralization and boldness of range-extending tropical and co-shoaling temperate fishes under controlled laboratory conditions. Fishes were exposed to 1 of 12 treatments (combinations of three temperature levels, two pCO2  levels and two shoal type levels: mixed species or temperate only) for 38 days. Lateralization (a measure of asymmetric expression of cognitive function in group coordination and predator escape) of tropical and temperate species was right-side biased under present-day conditions, but side bias significantly diminished in tropical and temperate fishes under ocean acidification. Ocean acidification also decreased shoal cohesion irrespective of shoaling type, with mixed-species shoals showing significantly lower cohesion than temperate-only shoals irrespective of climate stressors. Tropical fish became bolder under ocean acidification (after 4 weeks), and temperate fish became bolder with increasing temperature, while ocean acidification dampened temperate fish boldness. Our findings highlight the direct effect of climate stressors on fish behaviour and the interplay with the indirect effects of novel species interactions. Because strong shoal cohesion and lateralization are key determinants of species fitness, their degradation under ocean warming and acidification could adversely affect species performance in novel assemblages in a future ocean, and might slow down tropical species range extensions.


Subject(s)
Fishes , Seawater , Animals , Climate Change , Global Warming , Hydrogen-Ion Concentration , Oceans and Seas , Temperature
15.
ISME J ; 15(3): 879-893, 2021 03.
Article in English | MEDLINE | ID: mdl-33139871

ABSTRACT

Thermal swamps are unique ecosystems where geothermally warmed waters mix with decomposing woody biomass, hosting novel biogeochemical-cycling and lignin-degrading microbial consortia. Assembly of shotgun metagenome libraries resolved 351 distinct genomes from hot-spring (30-45 °C) and mesophilic (17 °C) sediments. Annotation of 39 refined draft genomes revealed metabolism consistent with oligotrophy, including pathways for degradation of aromatic compounds, such as syringate, vanillate, p-hydroxybenzoate, and phenol. Thermotolerant Burkholderiales, including Rubrivivax ssp., were implicated in diverse biogeochemical and aromatic transformations, highlighting their broad metabolic capacity. Lignin catabolism was further investigated using metatranscriptomics of sediment incubated with milled or Kraft lignin at 45 °C. Aromatic compounds were depleted from lignin-amended sediment over 148 h. The metatranscriptomic data revealed upregulation of des/lig genes predicted to specify the catabolism of syringate, vanillate, and phenolic oligomers in the sphingomonads Altererythrobacter ssp. and Novosphingobium ssp., as well as in the Burkholderiales genus, Rubrivivax. This study demonstrates how temperature structures biogeochemical cycling populations in a unique ecosystem, and combines community-level metagenomics with targeted metatranscriptomics to identify pathways with potential for bio-refinement of lignin-derived aromatic compounds. In addition, the diverse aromatic catabolic pathways of Altererythrobacter ssp. may serve as a source of thermotolerant enzymes for lignin valorization.


Subject(s)
Ecosystem , Lignin , Genomics , Metagenomics , Wetlands
16.
J Anim Ecol ; 90(3): 615-627, 2021 03.
Article in English | MEDLINE | ID: mdl-33232514

ABSTRACT

Climate change is altering the latitudinal distributions of species, with their capacity to keep pace with a shifting climate depending on the stochastic expression of population growth rates, and the influence of compensatory density feedback on age-specific survival rates. We use population-abundance time series at the leading edge of an expanding species' range to quantify the contribution of stochastic environmental drivers and density feedbacks to the dynamics of life stage-specific population growth. Using a tropical, range-shifting Indo-Pacific damselfish (Abudefduf vaigiensis) as a model organism, we applied variants of the phenomenological Gompertz-logistic model to a 14-year dataset to quantify the relative importance of density feedback and stochastic environmental drivers on the separate and aggregated population growth rates of settler and juvenile life stages. The top-ranked models indicated that density feedback negatively affected the growth of tropical settlers and juveniles. Rates of settlement were negatively linked to temperatures experienced by parents at potential source populations in the tropics, but their subsequent survival and that of juveniles increased with the temperatures experienced at the temperate sink. Including these stochastic effects doubled the deviance explained by the models, corroborating an important role of temperature. By incorporating sea-surface temperature projections for the remainder of this century into these models, we anticipate improved conditions for the population growth of juvenile coral-reef fishes, but not for settlers in temperate ecosystems. Previous research has highlighted the association between temperature and the redistribution of species. Our analyses reveal the contrasting roles of different life stages in the dynamics of range-shifting species responding to climate change, as they transition from vagrancy to residency in their novel ranges.


Subject(s)
Anthozoa , Ecosystem , Animals , Climate Change , Coral Reefs , Fishes , Oceans and Seas
17.
PLoS One ; 15(12): e0243446, 2020.
Article in English | MEDLINE | ID: mdl-33362197

ABSTRACT

The common or weedy seadragon, Phyllopteryx taeniolatus, is an iconic and endemic fish found across temperate reefs of southern Australia. Despite its charismatic nature, few studies have been published, and the extent of population sub-structuring remains poorly resolved. Here we used 7462 single nucleotide polymorphisms (SNPs) to identify the extent of population structure in the weedy seadragon along the temperate southeast coast of Australia. We identified four populations, with strong genetic structure (FST = 0.562) between them. Both Discriminant Analysis of Principle Components (DAPC) and Bayesian clustering analyses support four distinct genetic clusters (north to south: central New South Wales, southern NSW, Victoria and Tasmania). In addition to these genetic differences, geographical variation in external morphology was recorded, with individuals from New South Wales shaped differently for a few measurements to those from the Mornington Peninsula (Victoria). We posit that these genetic and morphological differences suggest that the Victorian population of P. taeniolatus was historically isolated by the Bassian Isthmus during the last glacial maximum and should now be considered at least a distinct population. We also recorded high levels of genetic structure among the other locations. Based on the genomic and to a degree morphological evidence presented in this study, we recommend that the Victorian population be managed separately from the eastern populations (New South Wales and Tasmania).


Subject(s)
Genetic Variation , Smegmamorpha/anatomy & histology , Smegmamorpha/genetics , Animals , Bayes Theorem , Discriminant Analysis , Genotype , Polymorphism, Single Nucleotide , Principal Component Analysis , South Australia
18.
Proc Natl Acad Sci U S A ; 117(41): 25771-25778, 2020 10 13.
Article in English | MEDLINE | ID: mdl-32989155

ABSTRACT

Cytochrome P450 enzymes have tremendous potential as industrial biocatalysts, including in biological lignin valorization. Here, we describe P450s that catalyze the O-demethylation of lignin-derived guaiacols with different ring substitution patterns. Bacterial strains Rhodococcus rhodochrous EP4 and Rhodococcus jostii RHA1 both utilized alkylguaiacols as sole growth substrates. Transcriptomics of EP4 grown on 4-propylguaiacol (4PG) revealed the up-regulation of agcA, encoding a CYP255A1 family P450, and the aph genes, previously shown to encode a meta-cleavage pathway responsible for 4-alkylphenol catabolism. The function of the homologous pathway in RHA1 was confirmed: Deletion mutants of agcA and aphC, encoding the meta-cleavage alkylcatechol dioxygenase, grew on guaiacol but not 4PG. By contrast, deletion mutants of gcoA and pcaL, encoding a CYP255A2 family P450 and an ortho-cleavage pathway enzyme, respectively, grew on 4-propylguaiacol but not guaiacol. CYP255A1 from EP4 catalyzed the O-demethylation of 4-alkylguaiacols to 4-alkylcatechols with the following apparent specificities (kcat/KM): propyl > ethyl > methyl > guaiacol. This order largely reflected AgcA's binding affinities for the different guaiacols and was the inverse of GcoAEP4's specificities. The biocatalytic potential of AgcA was demonstrated by the ability of EP4 to grow on lignin-derived products obtained from the reductive catalytic fractionation of corn stover, depleting alkylguaiacols and alkylphenols. By identifying related P450s with complementary specificities for lignin-relevant guaiacols, this study facilitates the design of these enzymes for biocatalytic applications. We further demonstrated that the metabolic fate of the guaiacol depends on its substitution pattern, a finding that has significant implications for engineering biocatalysts to valorize lignin.


Subject(s)
Bacterial Proteins/metabolism , Cytochrome P-450 Enzyme System/metabolism , Guaiacol/metabolism , Lignin/metabolism , Rhodococcus/enzymology , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Biocatalysis , Biodegradation, Environmental , Cytochrome P-450 Enzyme System/chemistry , Cytochrome P-450 Enzyme System/genetics , Guaiacol/chemistry , Kinetics , Lignin/chemistry , Rhodococcus/chemistry , Rhodococcus/genetics , Rhodococcus/metabolism , Substrate Specificity
19.
Ecol Evol ; 10(14): 6954-6966, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32760504

ABSTRACT

The relative roles of top-down (consumer-driven) and bottom-up (resource-driven) forcing in exploited marine ecosystems have been much debated. Examples from a variety of marine systems of exploitation-induced, top-down trophic forcing have led to a general view that human-induced predator perturbations can disrupt entire marine food webs, yet other studies that have found no such evidence provide a counterpoint. Though evidence continues to emerge, an unresolved debate exists regarding both the relative roles of top-down versus bottom-up forcing and the capacity of human exploitation to instigate top-down, community-level effects. Using time-series data for 104 reef communities spanning tropical to temperate Australia from 1992 to 2013, we aimed to quantify relationships among long-term trophic group population density trends, latitude, and exploitation status over a continental-scale biogeographic range. Specifically, we amalgamated two long-term monitoring databases of marine community dynamics to test for significant positive or negative trends in density of each of three key trophic levels (predators, herbivores, and algae) across the entire time series at each of the 104 locations. We found that trophic control tended toward bottom-up driven in tropical systems and top-down driven in temperate systems. Further, alternating long-term population trends across multiple trophic levels (a method of identifying trophic cascades), presumably due to top-down trophic forcing, occurred in roughly fifteen percent of locations where the prerequisite significant predator trends occurred. Such alternating trophic trends were significantly more likely to occur at locations with increasing predator densities over time. Within these locations, we found a marked latitudinal gradient in the prevalence of long-term, alternating trophic group trends, from rare in the tropics (<5% of cases) to relatively common in temperate areas (~45%). Lastly, the strongest trends in predator and algal density occurred in older no-take marine reserves; however, exploitation status did not affect the likelihood of alternating long-term trophic group trends occurring. Our data suggest that the type and degree of trophic forcing in this system are likely related to one or more covariates of latitude, and that ecosystem resiliency to top-down control does not universally vary in this system based on exploitation level.

20.
Glob Chang Biol ; 26(10): 5564-5573, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32530107

ABSTRACT

Climate change is redistributing marine and terrestrial species globally. Life-history traits mediate the ability of species to cope with novel environmental conditions, and can be used to gauge the potential redistribution of taxa facing the challenges of a changing climate. However, it is unclear whether the same traits are important across different stages of range shifts (arrival, population increase, persistence). To test which life-history traits most mediate the process of range extension, we used a 16-year dataset of 35 range-extending coral-reef fish species and quantified the importance of various traits on the arrival time (earliness) and degree of persistence (prevalence and patchiness) at higher latitudes. We show that traits predisposing species to shift their range more rapidly (large body size, broad latitudinal range, long dispersal duration) did not drive the early stages of redistribution. Instead, we found that as diet breadth increased, the initial arrival and establishment (prevalence and patchiness) of climate migrant species in temperate locations occurred earlier. While the initial incursion of range-shifting species depends on traits associated with dispersal potential, subsequent establishment hinges more on a species' ability to exploit novel food resources locally. These results highlight that generalist species that can best adapt to novel food sources might be most successful in a future ocean.


Subject(s)
Anthozoa , Climate Change , Animals , Coral Reefs , Diet , Fishes
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