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1.
Ann Oncol ; 28(suppl_8): viii13-viii15, 2017 Nov 01.
Article in English | MEDLINE | ID: mdl-29232469

ABSTRACT

Most women diagnosed with high-grade serous ovarian cancer (HGSC) develop recurrent disease and chemotherapy resistance, despite initially responding to treatment. The genomic characteristics of HGSC samples collected at initial surgery have been extensively studied. However, due to challenges of sample collection following treatment, much less is known about the molecular features of recurrent disease. Our recent studies have identified mechanisms of acquired resistance and biomarkers in recurrent HGSCs that could lead to improved treatment approaches.


Subject(s)
Cystadenocarcinoma, Serous/drug therapy , Cystadenocarcinoma, Serous/genetics , Ovarian Neoplasms/drug therapy , Ovarian Neoplasms/genetics , Antineoplastic Agents/pharmacology , Drug Resistance, Neoplasm/genetics , Female , Humans , Neoplasm Recurrence, Local/drug therapy , Neoplasm Recurrence, Local/genetics
2.
Cell Death Discov ; 1: 15053, 2015.
Article in English | MEDLINE | ID: mdl-28179987

ABSTRACT

Ovarian cancer is a deadly disease characterized by primary and acquired resistance to chemotherapy. We previously associated NF-κB signaling with poor survival in ovarian cancer, and functionally demonstrated this pathway as mediating proliferation, invasion and metastasis. We aimed to identify cooperating pathways in NF-κB-dependent ovarian cancer cells, using genome-wide RNA interference as a loss-of-function screen for key regulators of cell survival with IKKß inhibition. Functional genomic screen for interactions with NF-κB in ovarian cancer showed that cells depleted of Caspase8 died better with IKKß inhibition. Overall, low Caspase8 was associated with shorter overall survival in three independent gene expression data sets of ovarian cancers. Conversely, Caspase8 expression was markedly highest in ovarian cancer subtypes characterized by strong T-cell infiltration and better overall prognosis, suggesting that Caspase8 expression increased chemotherapy-induced cell death. We investigated the effects of Caspase8 depletion on apoptosis and necroptosis of TNFα-stimulated ovarian cancer cell lines. Inhibition of NF-κB in ovarian cancer cells switched the effects of TNFα signaling from proliferation to death. Although Caspase8-high cancer cells died by apoptosis, Caspase8 depletion downregulated NF-κB signaling, stabilized RIPK1 and promoted necroptotic cell death. Blockage of NF-κB signaling and depletion of cIAP with SMAC-mimetic further rendered these cells susceptible to killing by necroptosis. These findings have implications for anticancer strategies to improve outcome for women with low Caspase8-expressing ovarian cancer.

3.
Br J Cancer ; 111(12): 2297-307, 2014 Dec 09.
Article in English | MEDLINE | ID: mdl-25349970

ABSTRACT

BACKGROUND: Folate receptor 1 (FOLR1) is expressed in the majority of ovarian carcinomas (OvCa), making it an attractive target for therapy. However, clinical trials testing anti-FOLR1 therapies in OvCa show mixed results and require better understanding of the prognostic relevance of FOLR1 expression. We conducted a large study evaluating FOLR1 expression with survival in different histological types of OvCa. METHODS: Tissue microarrays composed of tumour samples from 2801 patients in the Ovarian Tumour Tissue Analysis (OTTA) consortium were assessed for FOLR1 expression by centralised immunohistochemistry. We estimated associations for overall (OS) and progression-free (PFS) survival using adjusted Cox regression models. High-grade serous ovarian carcinomas (HGSC) from The Cancer Genome Atlas (TCGA) were evaluated independently for association between FOLR1 mRNA upregulation and survival. RESULTS: FOLR1 expression ranged from 76% in HGSC to 11% in mucinous carcinomas in OTTA. For HGSC, the association between FOLR1 expression and OS changed significantly during the years following diagnosis in OTTA (Pinteraction=0.01, N=1422) and TCGA (Pinteraction=0.01, N=485). In OTTA, particularly for FIGO stage I/II tumours, patients with FOLR1-positive HGSC showed increased OS during the first 2 years only (hazard ratio=0.44, 95% confidence interval=0.20-0.96) and patients with FOLR1-positive clear cell carcinomas (CCC) showed decreased PFS independent of follow-up time (HR=1.89, 95% CI=1.10-3.25, N=259). In TCGA, FOLR1 mRNA upregulation in HGSC was also associated with increased OS during the first 2 years following diagnosis irrespective of tumour stage (HR: 0.48, 95% CI: 0.25-0.94). CONCLUSIONS: FOLR1-positive HGSC tumours were associated with an increased OS in the first 2 years following diagnosis. Patients with FOLR1-negative, poor prognosis HGSC would be unlikely to benefit from anti-FOLR1 therapies. In contrast, a decreased PFS interval was observed for FOLR1-positive CCC. The clinical efficacy of FOLR1-targeted interventions should therefore be evaluated according to histology, stage and time following diagnosis.


Subject(s)
Biomarkers, Tumor/biosynthesis , Folate Receptor 1/biosynthesis , Neoplasms, Glandular and Epithelial/metabolism , Ovarian Neoplasms/metabolism , Carcinoma, Ovarian Epithelial , Disease-Free Survival , Female , Humans , Immunohistochemistry , Middle Aged , Survival Analysis , Tissue Array Analysis
4.
Oncogene ; 30(25): 2810-22, 2011 Jun 23.
Article in English | MEDLINE | ID: mdl-21317925

ABSTRACT

The Salvador-Warts-Hippo (SWH) pathway was first discovered in Drosophila melanogaster as a potent inhibitor of tissue growth. The SWH pathway is highly conserved between D. melanogaster and mammals, both in function and in the mechanism of signal transduction. The mammalian SWH pathway limits tissue growth by inhibiting the nuclear access and expression of the transcriptional co-activator, Yes-associated protein (YAP). Mutation and altered expression of SWH pathway proteins has been observed in several types of human cancer, but the contribution of these events to tumorigenesis has been unclear. Here we show that YAP can enhance the transformed phenotype of ovarian cancer cell lines and that YAP confers resistance to chemotherapeutic agents that are commonly used to treat ovarian cancer. We find that high nuclear YAP expression correlates with poor patient prognosis in a cohort of 268 invasive epithelial ovarian cancer samples. Segregation by histotype shows that the correlation between nuclear YAP and poor survival is predominantly associated with clear cell tumors, independent of stage. Collectively our findings suggest that YAP derepression contributes to the genesis of ovarian clear cell carcinoma and that the SWH pathway is an attractive therapeutic target.


Subject(s)
Nuclear Proteins/physiology , Oncogenes , Ovarian Neoplasms/genetics , Trans-Activators/physiology , Transcription Factors/physiology , Antineoplastic Agents/pharmacology , Cell Cycle Proteins , Cell Line, Tumor , Cisplatin/pharmacology , Female , Humans , Nuclear Proteins/genetics , Ovarian Neoplasms/pathology , Paclitaxel/pharmacology , Trans-Activators/genetics , Transcription Factors/genetics
5.
Oncogene ; 28(2): 289-96, 2009 Jan 15.
Article in English | MEDLINE | ID: mdl-18850011

ABSTRACT

Tumor hypoxia induces the upregulation of hypoxia-inducible factor 1alpha (Hif-1alpha), which in turn induces the expression of genes including VEGF to recruit new blood vessel outgrowth, enabling tumor growth and metastasis. Interference with the Hif-1 pathway and neoangiogenesis is an attractive antitumor target. The hydroxylation of Hif-1alpha by prolyl-hydroxylase (PHD) proteins during normoxia serves as a recognition motif for its proteasomal degradation. However, under hypoxic conditions, hydroxylation is inhibited and furthermore, PHD proteins are themselves polyubiquitylated and degraded by Siah ubiquitin ligases. Our data demonstrate for the first time that inhibition of the interaction between Siah and PHD proteins using a fragment derived from a Drosophila protein (phyllopod) interferes with the PHD degradation. Furthermore, cells stably expressing the phyllopod fragment display reduced upregulation of Hif-1alpha protein levels and Hif-1-mediated gene expression under hypoxia. In a syngeneic mouse model of breast cancer, the phyllopod fragment reduced tumor growth and neoangiogenesis and prolonged survival of the mice. In addition, levels of Hif-1alpha and its target Glut-1 are reduced in tumors expressing the phyllopod fragment. These data show, in a proof-of-principle study, that Siah protein, the most upstream component of the hypoxia pathway yet identified, is a viable drug target for antitumor therapies.


Subject(s)
Drosophila Proteins/physiology , Nuclear Proteins/antagonists & inhibitors , Nuclear Proteins/physiology , Peptide Fragments/physiology , Proteins/antagonists & inhibitors , Ubiquitin-Protein Ligases/antagonists & inhibitors , Animals , Antineoplastic Agents/pharmacology , Breast Neoplasms/pathology , Cell Hypoxia/genetics , Cell Line, Tumor/metabolism , Cell Line, Tumor/transplantation , Dioxygenases/metabolism , Drosophila Proteins/genetics , Drug Delivery Systems , Female , Humans , Hypoxia-Inducible Factor 1, alpha Subunit/biosynthesis , Hypoxia-Inducible Factor 1, alpha Subunit/genetics , Hypoxia-Inducible Factor-Proline Dioxygenases , Mammary Neoplasms, Experimental/blood supply , Mammary Neoplasms, Experimental/enzymology , Mice , Mice, Inbred C57BL , Neoplasm Proteins/physiology , Neovascularization, Pathologic/enzymology , Neovascularization, Pathologic/prevention & control , Nuclear Proteins/genetics , Peptide Fragments/genetics , Procollagen-Proline Dioxygenase/metabolism , Proteasome Endopeptidase Complex/metabolism , Protein Processing, Post-Translational , Proteins/genetics , Proteins/physiology , Recombinant Fusion Proteins/physiology , Ubiquitin-Protein Ligases/physiology , Ubiquitination , Xenograft Model Antitumor Assays
6.
Br J Cancer ; 93(3): 310-8, 2005 Aug 08.
Article in English | MEDLINE | ID: mdl-16012519

ABSTRACT

Retinoids induce growth arrest, differentiation, and cell death in many cancer cell types. One factor determining the sensitivity or resistance to the retinoid anticancer signal is the transcriptional response of retinoid-regulated target genes in cancer cells. We used cDNA microarray to identify 31 retinoid-regulated target genes shared by two retinoid-sensitive neuroblastoma cell lines, and then sought to determine the relevance of the target gene responses to the retinoid anticancer signal. The pattern of retinoid responsiveness for six of 13 target genes (RARbeta2, CYP26A1, CRBP1, RGS16, DUSP6, EGR1) correlated with phenotypic retinoid sensitivity, across a panel of retinoid-sensitive or -resistant lung and breast cancer cell lines. Retinoid treatment of MYCN transgenic mice bearing neuroblastoma altered the expression of five of nine target genes examined (RARbeta2, CYP26A1, CRBP1, DUSP6, PLAT) in neuroblastoma tumour tissue in vivo. In retinoid-sensitive neuroblastoma, lung and breast cancer cell lines, direct inhibition of retinoid-induced RARbeta2 expression blocked induction of only one of eight retinoid target genes (CYP26A1). DNA demethylation, histone acetylation, and exogenous overexpression of RARbeta2 partially restored retinoid-responsive CYP26A1 expression in RA-resistant MDA-MB-231 breast, but not SK-MES-1 lung, cancer cells. Combined, rather than individual, inhibition of DUSP6 and RGS16 was required to block retinoid-induced growth inhibition in neuroblastoma cells, through phosphorylation of extracellular-signal-regulated kinase. In conclusion, sensitivity to the retinoid anticancer signal is determined in part by the transcriptional response of key retinoid-regulated target genes, such as RARbeta2, DUSP6, and RGS16.


Subject(s)
Gene Expression Profiling , Gene Expression Regulation, Neoplastic/physiology , Neoplasms/genetics , Retinoids/genetics , Animals , Cell Line, Tumor , DNA Primers , Humans , Immunoblotting , Mice , Mice, Transgenic , Oligonucleotide Array Sequence Analysis , RNA, Small Interfering , Reverse Transcriptase Polymerase Chain Reaction , Transfection
8.
Oncogene ; 20(50): 7326-33, 2001 Nov 01.
Article in English | MEDLINE | ID: mdl-11704862

ABSTRACT

Many cytokines and growth factors induce transcription of immediate early response genes by activating members of the Signal Transducers and Activators of Transcription (STAT) family. Although significant progress has been made in understanding the events that lead to the activation of STAT proteins, less is known about the regulation of their expression. Here we report that murine embryonic fibroblasts derived from c-Cbl-deficient mice display significantly increased levels of STAT1 and STAT5 protein. In contrast, STAT2 and STAT3 expression, as well as the levels of the tyrosine kinases Jak1 and Tyk2, appear to be regulated independently of c-Cbl. Interestingly, the half-life of STAT1 was unaffected by the presence of c-Cbl, indicating that c-Cbl acts independently of STAT1 degradation. Further analysis revealed similar levels of STAT1 mRNA, however, a dramatically increased rate of STAT1 protein synthesis was observed in c-Cbl-deficient cells. Thus, our findings demonstrate an additional control mechanism over STAT1 function, and also provide a novel biological effect of the Cbl protein family.


Subject(s)
DNA-Binding Proteins/biosynthesis , Gene Expression Regulation , Milk Proteins , Proto-Oncogene Proteins/physiology , Trans-Activators/biosynthesis , Ubiquitin-Protein Ligases , Animals , Cell Division/drug effects , DNA-Binding Proteins/genetics , Fibroblasts/cytology , Fibroblasts/metabolism , Gene Expression Regulation/drug effects , Growth Inhibitors/pharmacology , Interferon-beta/pharmacology , Janus Kinase 1 , Mice , Mice, Knockout , Protein Biosynthesis , Protein-Tyrosine Kinases/biosynthesis , Protein-Tyrosine Kinases/genetics , Proteins/genetics , Proto-Oncogene Proteins/deficiency , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins c-cbl , RNA, Messenger/biosynthesis , STAT1 Transcription Factor , STAT2 Transcription Factor , STAT3 Transcription Factor , STAT5 Transcription Factor , Signal Transduction , TYK2 Kinase , Trans-Activators/genetics
9.
J Cell Sci ; 114(Pt 7): 1409-16, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11257006

ABSTRACT

Normal apoptosis occurs continuously in the olfactory neuroepithelium of adult vertebrates, making it a useful model for studying neuronal apoptosis. Here we demonstrate that overexpression of the anti-apoptotic Bag-1 gene in olfactory neuronal cells confers a strong resistance to apoptosis. Conversely decreased levels of Bag-1 were found to precede a massive wave of olfactory neuronal apoptosis triggered by synaptic target ablation. We show that the decrease is brought about by ubiquitination and subsequent degradation of the Bag-1 protein. The ring finger protein Siah-2 is a likely candidate for the ubiquitination reaction since Siah-2 mRNA accumulated in lesioned olfactory neuroepithelium and overexpression of Siah-2 stimulated Bag-1 ubiquitination and degradation in transient expression assays. These results together identify destabilization of Bag-1 as a necessary step in olfactory neuronal apoptosis.


Subject(s)
Apoptosis , Carrier Proteins/metabolism , Neurons/cytology , Olfactory Mucosa/cytology , Amino Acid Sequence , Animals , COS Cells , Carrier Proteins/genetics , Chlorocebus aethiops , DNA-Binding Proteins , Dopamine/pharmacology , Down-Regulation , Gene Expression , Mice , Molecular Sequence Data , Neurons/drug effects , Nuclear Proteins/metabolism , Transcription Factors , Ubiquitin-Protein Ligases , Ubiquitins/genetics , Up-Regulation
10.
Oncogene ; 19(29): 3299-308, 2000 Jul 06.
Article in English | MEDLINE | ID: mdl-10918586

ABSTRACT

Cells rely on the ability to receive and interpret external signals to regulate growth, differentiation, and death. Positive transduction of these signals to the cytoplasm and nucleus has been extensively characterized, and genetic studies in Drosophila have made major contributions to the understanding of these pathways. Less well understood, but equally important, are the mechanisms underlying signal down-regulation. Here we report biochemical and genetic characterization of the Drosophila homologue of c-Cbl, a negative regulator of signal transduction with ubiquitin-protein ligase activity. A new isoform of D-Cbl, D-CblL, has been identified that contains SH3-binding and UBA domains previously reported to be absent. Genetic analysis demonstrates that Dv-cbl, analogous to the mammalian v-cbl oncogene, is a dominant negative mutation able to enhance signalling from the Drosophila Egfr and cooperate with activating mutations in the sevenless pathway to produce melanotic tumours. In addition, our data show genetic and biochemical links between D-Cbl and proteins involved in endocytosis and ubiquitination, suggesting that v-Cbl may exert its oncogenic effect by enhancing receptor signalling as a consequence of suppressing receptor endocytosis.


Subject(s)
Drosophila Proteins , Insect Proteins/physiology , Proto-Oncogene Proteins/physiology , Alternative Splicing , Amino Acid Sequence , Animals , Drosophila/genetics , Drosophila/growth & development , ErbB Receptors/metabolism , Exons , Gene Expression , Humans , Insect Proteins/biosynthesis , Insect Proteins/genetics , Molecular Sequence Data , Phenotype , Proline , Proto-Oncogene Proteins/biosynthesis , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins c-cbl , RNA, Messenger , Sequence Homology, Amino Acid , Signal Transduction , Ubiquitins/metabolism
11.
Proc Natl Acad Sci U S A ; 97(5): 2105-10, 2000 Feb 29.
Article in English | MEDLINE | ID: mdl-10681424

ABSTRACT

Induction of wild-type p53 in mouse fibroblasts causes cell cycle arrest at the G(1) phase, whereas coexpression of p53 and the protooncogene c-myc induces apoptosis. Although p53 transcriptional activity generally is required for both pathways, the molecular components mediating p53-dependent apoptosis are not well understood. To identify factors that could mediate p53-induced cell death, we used a comparative RNA differential display procedure. We have identified Pw1/Peg3 as a gene product induced during p53/c-myc-mediated apoptosis. Pw1/Peg3 is not induced during p53-mediated G(1) growth arrest nor by c-myc alone. Although it is not clear whether the induction of Pw1/Peg3 depends on p53 activity, we show that Pw1/Peg3 interacts with a p53-inducible gene product Siah1a. We demonstrate that coexpression of Pw1/Peg3 with Siah1a induces apoptosis independently of p53 whereas expression of Pw1/Peg3 or Siah1a separately has no effect on cell death. These data suggest that Siah1a and Pw1/Peg3 cooperate in the p53-mediated cell death pathway. Furthermore, we show that inhibiting Pw1/Peg3 activity blocks p53-induced apoptosis. The observation that Pw1/Peg3 is necessary for the p53 apoptotic response suggests a pivotal role for this gene in determining cell death versus survival.


Subject(s)
Apoptosis , Nuclear Proteins/metabolism , Protein Kinases , Proteins/metabolism , Transcription Factors/metabolism , Tumor Suppressor Protein p53/metabolism , 3T3 Cells , Animals , Gene Expression , Humans , Kruppel-Like Transcription Factors , Mice , Mutagenesis , Proteins/genetics , Proto-Oncogene Proteins c-myc/metabolism , RNA, Antisense , RNA, Messenger , Transcription Factors/genetics , Tumor Suppressor Protein p53/genetics , Ubiquitin-Protein Ligases
12.
Mol Cell Biol ; 20(3): 851-67, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10629042

ABSTRACT

Fyn is a prototype Src-family tyrosine kinase that plays specific roles in neural development, keratinocyte differentiation, and lymphocyte activation, as well as roles redundant with other Src-family kinases. Similar to other Src-family kinases, efficient regulation of Fyn is achieved through intramolecular binding of its SH3 and SH2 domains to conserved regulatory regions. We have investigated the possibility that the tyrosine kinase regulatory protein Cbl provides a complementary mechanism of Fyn regulation. We show that Cbl overexpression in 293T embryonic kidney and Jurkat T-lymphocyte cells led to a dramatic reduction in the active pool of Fyn; this was seen as a reduction in Fyn autophosphorylation, reduced phosphorylation of in vivo substrates, and inhibition of transcription from a Src-family kinase response element linked to a luciferase reporter. Importantly, a Fyn mutant (FynY528F) relieved of intramolecular repression was still negatively regulated by Cbl. The Cbl-dependent negative regulation of Fyn did not appear to be mediated by inhibition of Fyn kinase activity but was correlated with enhanced protein turnover. Consistent with such a mechanism, elevated levels of Fyn protein were observed in cell lines derived from Cbl(-/-) mice compared to those in wild-type controls. The effects of Cbl on Fyn were not observed when the 70ZCbl mutant protein was analyzed. Taken together, these observations implicate Cbl as a component in the negative regulation of Fyn and potentially other Src-family kinases, especially following kinase activation. These results also suggest that protein degradation may be a general mechanism for Cbl-mediated negative regulation of activated tyrosine kinases.


Subject(s)
Gene Expression Regulation, Enzymologic , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins/metabolism , Ubiquitin-Protein Ligases , Amino Acid Substitution , Animals , Cell Line , Humans , Kidney , Kinetics , Mice , Mice, Knockout , Mutagenesis, Site-Directed , Protein-Tyrosine Kinases/genetics , Protein-Tyrosine Kinases/metabolism , Proto-Oncogene Mas , Proto-Oncogene Proteins/deficiency , Proto-Oncogene Proteins c-cbl , Proto-Oncogene Proteins c-fyn , Proto-Oncogenes , Recombinant Proteins/metabolism , T-Lymphocytes , Transfection
13.
EMBO J ; 18(13): 3616-28, 1999 Jul 01.
Article in English | MEDLINE | ID: mdl-10393178

ABSTRACT

Colony-stimulating factor-1 (CSF-1) activation of the CSF-1 receptor (CSF-1R) causes Cbl protooncoprotein tyrosine phosphorylation, Cbl-CSF-1R association and their simultaneous multiubiquitination at the plasma membrane. The CSF-1R is then rapidly internalized and degraded, whereas Cbl is deubiquitinated in the cytoplasm without being degraded. We have used primary macrophages from gene-targeted mice to study the role of Cbl. Cbl-/- macrophages form denser colonies and, at limiting CSF-1 concentrations, proliferate faster than Cbl+/+ macrophages. Their CSF-1Rs fail to exhibit multiubiquitination and a second wave of tyrosine phosphorylation previously suggested to be involved in preparation of the CSF-1-CSF-1R complex for endocytosis. Consistent with this result, Cbl-/- macrophage cell surface CSF-1-CSF-1R complexes are internalized more slowly, yet are still lysosomally degraded, and the CSF-1 utilization by Cbl-/- macrophages is reduced approximately 2-fold. Thus, attenuation of proliferation by Cbl is associated with its positive regulation of the coordinated multiubiquitination and endocytosis of the activated CSF-1R, and a reduction in the time that the CSF-1R signals from the cell surface. The results provide a paradigm for studies of the mechanisms underlying Cbl attenuation of proliferative responses induced by ligation of receptor tyrosine kinases.


Subject(s)
Endocytosis , Macrophages/cytology , Proteasome Endopeptidase Complex , Proto-Oncogene Proteins/metabolism , Receptor, Macrophage Colony-Stimulating Factor/metabolism , Ubiquitin-Protein Ligases , Ubiquitins/metabolism , Animals , Cell Division , Cell Size , Cell Survival , Cell Transformation, Neoplastic , Down-Regulation/drug effects , Endocytosis/drug effects , Gene Deletion , Lysosomes/drug effects , Lysosomes/metabolism , Macrophage Colony-Stimulating Factor/pharmacology , Macrophages/drug effects , Macrophages/metabolism , Macrophages/pathology , Mice , Mice, Inbred C57BL , Peptide Hydrolases/physiology , Phosphorylation , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins c-cbl , Signal Transduction/drug effects , Tyrosine/metabolism , ras Proteins/metabolism
14.
J Immunol ; 162(12): 7133-9, 1999 Jun 15.
Article in English | MEDLINE | ID: mdl-10358158

ABSTRACT

Recent studies indicate that c-Cbl and its oncogenic variants can modulate the activity of protein tyrosine kinases. This finding is supported by studies showing that c-Cbl interacts directly with a negative regulatory tyrosine in ZAP-70, and that the levels of tyrosine-phosphorylated ZAP-70 and numerous other proteins are increased in TCR-stimulated thymocytes from c-Cbl-deficient mice. Here, we demonstrate that this enhanced phosphorylation of ZAP-70 and that of two substrates, LAT and SLP-76, is not due to altered protein levels but is the consequence of two separate events. First, we find increased expression of tyrosine-phosphorylated TCRzeta chain in c-Cbl-deficient thymocytes, which results in a higher level of zeta-chain-associated ZAP-70 that is initially accessible for activation. Thus, more ZAP-70 is activated and more of its substrates (LAT and SLP-76) become tyrosine-phosphorylated after TCR stimulation. However, an additional mechanism of ZAP-70 regulation is evident at a later time poststimulation. At this time, ZAP-70 from both normal and c-Cbl-/- thymocytes becomes hyperphosphorylated; however, only in normal thymocytes does this correlate with ZAP-70 down-regulation and a diminished ability to phosphorylate LAT and SLP-76. In contrast, c-Cbl-deficient thymocytes display altered phosphorylation kinetics, for which LAT phosphorylation is increased and SLP-76 phosphorylation is sustained. Thus, the ability to down-regulate the phosphorylation of two ZAP-70 substrates is impaired in c-Cbl-/- thymocytes. These findings provide evidence that c-Cbl is involved in the negative regulation of the phosphorylation of LAT and SLP-76 by ZAP-70.


Subject(s)
Adaptor Proteins, Signal Transducing , Carrier Proteins/metabolism , Phosphoproteins/metabolism , Protein-Tyrosine Kinases/metabolism , Proto-Oncogene Proteins/genetics , T-Lymphocytes/enzymology , Tyrosine/metabolism , Ubiquitin-Protein Ligases , src Homology Domains/immunology , Animals , CD4 Antigens/metabolism , Kinetics , Lymphocyte Specific Protein Tyrosine Kinase p56(lck)/metabolism , Membrane Proteins/metabolism , Mice , Mice, Inbred C57BL , Mice, Knockout , Phosphorylation , Proto-Oncogene Proteins/deficiency , Proto-Oncogene Proteins/metabolism , Proto-Oncogene Proteins c-cbl , Receptors, Antigen, T-Cell/metabolism , Substrate Specificity/genetics , T-Lymphocytes/metabolism , Time Factors , ZAP-70 Protein-Tyrosine Kinase
15.
Nat Genet ; 21(1 Suppl): 25-32, 1999 Jan.
Article in English | MEDLINE | ID: mdl-9915497

ABSTRACT

The excitement surrounding microarray technology has been tempered by the limited ability of the general biomedical research community to gain access to it. Given the hardware required for exploitation of the technology is becoming increasingly available, it is an appropriate moment to review options, be they commercially or publically available. Here, we provide a snapshot of the rapidly changing field of microarray-based RNA expression analysis and consider the components and procedures for putting together a complete system.


Subject(s)
Gene Expression , Oligonucleotide Array Sequence Analysis/economics , Oligonucleotide Array Sequence Analysis/instrumentation , Animals , Bioethics , Cell Line , Cloning, Molecular , Database Management Systems , Expressed Sequence Tags , Genome , Humans , Oligonucleotide Array Sequence Analysis/methods , Saccharomyces cerevisiae , Tissue Banks
16.
Mol Cell Biol ; 18(8): 4872-82, 1998 Aug.
Article in English | MEDLINE | ID: mdl-9671496

ABSTRACT

The c-Cbl protein is tyrosine phosphorylated and forms complexes with a wide range of signalling partners in response to various growth factors. How c-Cbl interacts with proteins, such as Grb2, phosphatidylinositol 3-kinase, and phosphorylated receptors, is well understood, but its role in these complexes is unclear. Recently, the Caenorhabditis elegans Cbl homolog, Sli-1, was shown to act as a negative regulator of epidermal growth factor receptor signalling. This finding forced a reassessment of the role of Cbl proteins and highlighted the desirability of testing genetically whether c-Cbl acts as a negative regulator of mammalian signalling. Here we investigate the role of c-Cbl in development and homeostasis in mice by targeted disruption of the c-Cbl locus. c-Cbl-deficient mice were viable, fertile, and outwardly normal in appearance. Bone development and remodelling also appeared normal in c-Cbl mutants, despite a previously reported requirement for c-Cbl in osteoclast function. However, consistent with a high level of expression of c-Cbl in the hemopoietic compartment, c-Cbl-deficient mice displayed marked changes in their hemopoietic profiles, including altered T-cell receptor expression, lymphoid hyperplasia, and primary splenic extramedullary hemopoiesis. The mammary fat pads of mutant female mice also showed increased ductal density and branching compared to those of their wild-type littermates, indicating an unanticipated role for c-Cbl in regulating mammary growth. Collectively, the hyperplastic histological changes seen in c-Cbl mutant mice are indicative of a normal role for c-Cbl in negatively regulating signalling events that control cell growth. Consistent with this view, we observed greatly increased intracellular protein tyrosine phosphorylation in thymocytes following CD3epsilon cross-linking. In particular, phosphorylation of ZAP-70 kinase in thymocytes was uncoupled from a requirement for CD4-mediated Lck activation. This study provides the first biochemical characterization of any organism that is deficient in a member of this unique protein family. Our findings demonstrate critical roles for c-Cbl in hemopoiesis and in controlling cellular proliferation and signalling by the Syk/ZAP-70 family of protein kinases.


Subject(s)
CD4-Positive T-Lymphocytes/cytology , CD8-Positive T-Lymphocytes/cytology , Protein-Tyrosine Kinases/metabolism , Proto-Oncogene Proteins/physiology , Signal Transduction , Ubiquitin-Protein Ligases , Animals , Bone Development , Bone Remodeling , CD3 Complex/metabolism , CD4-CD8 Ratio , Female , Gene Deletion , Gene Targeting , Hyperplasia , Male , Mammary Glands, Animal/cytology , Mice , Mice, Inbred C57BL , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins c-cbl , Splenomegaly , Thymus Gland/cytology , ZAP-70 Protein-Tyrosine Kinase
17.
Biochem Biophys Res Commun ; 240(1): 46-50, 1997 Nov 07.
Article in English | MEDLINE | ID: mdl-9367879

ABSTRACT

The protein product of c-cbl proto-oncogene is known to interact with several proteins, including Grb2, Crk and PI3 kinase, and is thought to regulate signalling by many cell surface receptors. The precise function of c-Cbl in these pathways is not clear, although a genetic analysis in Caenorhabditis elegans suggests that c-Cbl is a negative regulator of the epidermal growth factor receptor. Here we describe a yeast two hybrid screen performed with c-Cbl in an attempt to further elucidate its role in signal transduction. The screen identified interactions involving c-Cbl and two 14-3-3 isoforms, cytokeratin 18, human unconventional myosin IC, and a recently identified SH3 domain containing protein, SH3 P17. We have used the yeast two hybrid assay to localise regions of c-Cbl required for its interaction with each of the proteins. Interaction with 14-3-3 is demonstrated in mammalian cell extracts.


Subject(s)
Caenorhabditis elegans Proteins , Cytoskeletal Proteins/metabolism , Proteins/metabolism , Proto-Oncogene Proteins/metabolism , Saccharomyces cerevisiae/genetics , Tyrosine 3-Monooxygenase , Ubiquitin-Protein Ligases , 14-3-3 Proteins , Cytoskeletal Proteins/genetics , HeLa Cells , Humans , Jurkat Cells , Peptide Fragments/genetics , Peptide Mapping , Protein Binding , Proteins/genetics , Proteins/physiology , Proto-Oncogene Mas , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins/physiology , Proto-Oncogene Proteins c-cbl , Transformation, Genetic
18.
Hum Mol Genet ; 6(12): 2011-9, 1997 Nov.
Article in English | MEDLINE | ID: mdl-9328464

ABSTRACT

Telomerase is a multicomponent reverse transcriptase enzyme that adds DNA repeats to the ends of chromosomes using its RNA component as a template for synthesis. Telomerase activity is detected in the germline as well as the majority of tumors and immortal cell lines, and at low levels in several types of normal cells. We have cloned a human gene homologous to a protein from Saccharomyces cerevisiae and Euplotes aediculatus that has reverse transcriptase motifs and is thought to be the catalytic subunit of telomerase in those species. This gene is present in the human genome as a single copy sequence with a dominant transcript of approximately 4 kb in a human colon cancer cell line, LIM1215. The cDNA sequence was determined using clones from a LIM1215 cDNA library and by RT-PCR, cRACE and 3'RACE on mRNA from the same source. We show that the gene is expressed in several normal tissues, telomerase-positive post-crisis (immortal) cell lines and various tumors but is not expressed in the majority of normal tissues analyzed, pre-crisis (non-immortal) cells and telomerase-negative immortal (ALT) cell lines. Multiple products were identified by RT-PCR using primers within the reverse transcriptase domain. Sequencing of these products suggests that they arise by alternative splicing. Strikingly, various tumors, cell lines and even normal tissues (colonic crypt and testis) showed considerable differences in the splicing patterns. Alternative splicing of the telomerase catalytic subunit transcript may be important for the regulation of telomerase activity and may give rise to proteins with different biochemical functions.


Subject(s)
Alternative Splicing , Telomerase/genetics , Telomerase/isolation & purification , Amino Acid Sequence , Animals , Base Sequence , Catalysis , Cell Line, Transformed , Euplotes/genetics , Gene Expression Regulation , Genes, Fungal , Genes, Protozoan , Genetic Variation , Humans , Molecular Sequence Data , Saccharomyces cerevisiae/genetics , Sequence Alignment , Telomerase/metabolism , Tumor Cells, Cultured
19.
Oncogene ; 14(22): 2709-19, 1997 Jun 05.
Article in English | MEDLINE | ID: mdl-9178769

ABSTRACT

The c-Cbl proto-oncogene encodes a multidomain phosphoprotein that has been demonstrated to interact with a wide range of signalling proteins. The biochemical function of c-Cbl in these complexes is, however, unclear. Recent studies with the C. elegans Cbl homologue, sli-1, have suggested that Cbl proteins may act as negative regulators of EGF receptor (EGFR) signalling. As the EGFR and other protein tyrosine kinase receptor signalling pathways are highly conserved between insects and vertebrates, we sought a Drosophila homologue of c-Cbl for a detailed genetic analysis. We report here that Drosophila melanogaster has a single gene, D-cbl, that is homologous to c-cbl. We find that D-cbl encodes a 52 kDa protein that has a high degree of similarity to c-Cbl and SLI-1 across novel phosphotyrosine-binding (PTB) and RING finger domains. Surprisingly, however, D-Cbl is C-terminally truncated relative to c-Cbl and SLI-1 and consequently is unable to bind SH3-domain containing adaptor proteins, including the Drosophila Grb2 homologue, Drk. Although the D-Cbl protein lacks Drk binding sites it can nevertheless associate with a tyrosine phosphorylated protein, or is itself tyrosine phosphorylated in an DER dependent manner and associates with activated Drosophila EGF receptors (DER) in vivo. Consistent with a role for D-Cbl in DER dependent patterning in the embryo and adult, D-Cbl is expressed at a high level in early embryos and throughout the imaginal discs in third instar larvae. This study forms the basis for future genetic analysis of D-Cbl, aimed at gaining insights into the role of Cbl proteins in signal transduction.


Subject(s)
Drosophila Proteins , Drosophila melanogaster/genetics , ErbB Receptors/genetics , Proto-Oncogene Proteins/genetics , Ubiquitin-Protein Ligases , Amino Acid Sequence , Animals , Base Sequence , Binding Sites , DNA, Complementary , Evolution, Molecular , Gene Expression Regulation, Developmental , Humans , Molecular Sequence Data , Proto-Oncogene Mas , Proto-Oncogene Proteins/metabolism , Proto-Oncogene Proteins c-cbl , Sequence Homology, Amino Acid
20.
Genomics ; 41(2): 160-8, 1997 Apr 15.
Article in English | MEDLINE | ID: mdl-9143490

ABSTRACT

Seven-in-absentia (sina) is epistatic to all other known genes in the sevenless-ras signaling pathway, which mediates R7 photoreceptor formation in the Drosophila eye. The murine genome contains several closely related sina homologues (Siah1A-D, Siah2) that are also likely to participate in ras signaling. As part of a genetic and biochemical analysis of the mammalian Siah genes, we have used gene-specific probes to map the chromosomal positions of each family member. Here we report their chromosomal positions in relation to a number of known mouse mutations and also describe an analysis of the human Siah genes. By comparing the complexity of the Siah genes in these two mammalian species we have gained further insight into which members of this murine multigene family are likely to be functional.


Subject(s)
Chromosome Mapping , Nuclear Proteins/genetics , Amino Acid Sequence , Animals , Conserved Sequence , Crosses, Genetic , Drosophila , Female , Humans , Male , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Sequence Homology, Amino Acid , Ubiquitin-Protein Ligases
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