Parrot Dietary Habits and Consumption of Alternate Foodstuffs.

Inappropriate diets cause many of the health problems commonly reported in parrots by psittaculturists and veterinarians. The dietary management of captive parrots would benefit from information derived from studies of dietary habits of wild parrots; however, it is unclear how complete this body of knowledge is at this time. Documentation of parrots' dietary habits appears to have grown dramatically over the past century. Reports of parrots consuming a number of foodstuffs beyond the reproductive parts of plants (alternate foodstuffs) have increased. The extent of alternate foodstuffs in parrot diets is currently unknown. We used Google search engines (ie, Scholar, Videos, Images) to determine how well psittaciform dietary habits have been studied to date and to quantify reports of alternate foodstuffs consumption among genera of Psittaciformes. We found that the dietary habits of over 43% of parrot species are poorly resolved. The dietary habits of 71.5% of parrot species classified by the International Union for Conservation of Nature as at risk of extinction are not well resolved. Parrots' consumption of alternate foodstuffs occurred at the following rates at the genus level: 91.2% foliage, 76.9% terrestrial invertebrates and fine earthen materials, 74.7% wood, 44% pure minerals, 34.1% vertebrates (9.9% dung), 29.7% sap, 19.8% roots, 17.6% charcoal, 18.7% epiphytes, 16.5% coarse earthen materials, 8.8% algae, and 6.6% aquatic invertebrates. Of these reports, 79.1% involved observations of wild parrots. Many parrot species may be more omnivorous than previously realized. Alternate foodstuffs are generally absent from current veterinary-based dietary recommendations for captive parrots. Future studies are needed to determine whether providing alternate foodstuffs to captive parrots can be used as a means to improve their diets and thus their health, welfare, and reproductive success.

Modelling Red-Crowned Parrot (Psittaciformes: Amazona viridigenalis [Cassin, 1853]) distributions in the Rio Grande Valley of Texas using elevation and vegetation indices and their derivatives.

Texas Rio Grande Valley Red-crowned Parrots (Psittaciformes: Amazona viridigenalis [Cassin, 1853]) primarily occupy vegetated urban rather than natural areas. We investigated the utility of raw vegetation indices and their derivatives as well as elevation in modelling the Red-crowned parrot's general use, nest site, and roost site habitat distributions. A feature selection algorithm was employed to create and select an ensemble of fine-scale, top-ranked MaxEnt models from optimally-sized, decorrelated subsets of four to seven of 199 potential variables. Variables were ranked post hoc by frequency of appearance and mean permutation importance in top-ranked models. Our ensemble models accurately predicted the three distributions of interest ([Formula: see text] Area Under the Curve [AUC] = 0.904-0.969). Top-ranked variables for different habitat distribution models included: (a) general use-percent cover of preferred ranges of entropy texture of Normalized Difference Vegetation Index (NDVI) values, entropy and contrast textures of NDVI, and elevation; (b) nest site-entropy textures of NDVI and Green-Blue NDVI, and percent cover of preferred range of entropy texture of NDVI values; (c) roost site-percent cover of preferred ranges of entropy texture of NDVI values, contrast texture of NDVI, and entropy texture of Green-Red Normalized Difference Index. Texas Rio Grande Valley Red-crowned Parrot presence was associated with urban areas with high heterogeneity and randomness in the distribution of vegetation and/or its characteristics (e.g., arrangement, type, structure). Maintaining existing preferred vegetation types and incorporating them into new developments should support the persistence of Red-crowned Parrots in southern Texas.

Inferring the decision rules that drive co-foraging affiliations in wild mixed-species parrot groups.

Animals gathered around a specific location or resource may represent mixed-species aggregations or mixed-species groups. Patterns of individuals choosing to join these groups can provide insight into the information processing underlying these decisions. However, we still have little understanding of how much information these decisions are based upon. We used data on 12 parrot species to test what kind of information each species may use about others to make decisions about which mixed-species aggregations to participate in. We used co-presence and joining patterns with categorization and model fitting methods to test how these species could be making grouping decisions. Species generally used a simpler lower-category method to choose which other individuals to associate with, rather than basing these decisions on species-level information. We also found that the best-fit models for decision-making differed across the 12 species and included different kinds of information. We found that not only does this approach provide a framework to test hypotheses about why individuals join or leave mixed-species aggregations, it also provides insight into what features each parrot could have been using to make their decisions. While not exhaustive, this approach provides a novel examination of the potential features that species could use to make grouping decisions and could provide a link to the perceptive and cognitive abilities of the animals making these minute-by-minute decisions. This article is part of the theme issue 'Mixed-species groups and aggregations: shaping ecological and behavioural patterns and processes'.

Nutrition of free-living Neotropical psittacine nestlings and implications for hand-feeding formulas.

Psittacidae is one of the most endangered families of birds in the world. Knowledge of their nutrition is important for understanding their survival and productivity in the wild, as well as for their adequate husbandry under human care. Hand-rearing is a common practice for psittacines, however research on their nutrition is limited. We analysed the predicted metabolisable energy, crude protein, crude fat, minerals and the essential amino acid profiles of the crop contents from free-living nestlings of scarlet macaws (Ara macao) and red-and-green macaws (Ara chloropterus) from southeastern Peru, Cuban Amazons (Amazona leucocephala bahamensis) from the Bahamas, lilac-crowned Amazons (Amazona finschi) from northwestern Mexico and thick-billed parrots (Rhynchopsitta pachyrhyncha) from northern Mexico. The crop content of the different parrot species displayed remarkably similar nutritional profiles, considering their diversity in habitats, geographic ranges and food sources. The crude protein and crude fat concentrations in crop samples were particularly similar for the Ara and Amazona species, while the thick-billed parrot stood out for its higher crude fat and lower crude protein content. Wider variations were found among the concentrations of sodium (Na) and iron (Fe), proline and tryptophan. Compared with the requirements of 6-12 weeks leghorn chickens, all free-ranging parrot diets contained lower crude protein, calcium (Ca), potassium (P) and Na concentrations. The hand-feeding formulas contained lower crude fat, magnesium (Mg), arginine, valine and phenylalanine concentrations, as well as much higher levels of Ca and zinc (Zn), in comparison with parrot crop samples. Our data suggest that a single formulation could be used to hand-rear Ara and Amazona sp. of 3 weeks of age and older, while a different formulation would likely be more appropriated for Rhynchopsitta sp. Experimental studies should evaluate if increasing the concentration of crude fat, Mg, arginine, valine and phenylalanine enhances psittacine chick growth and health.

Fatty acid profiles of crop contents of free-living psittacine nestlings and of commercial hand-feeding formulas.

Research on psittacine nutrition is limited, and nestling requirements are poorly understood. This study analysed fatty acid (FA) profiles of crop contents of free-living scarlet macaws (Ara macao, n = 18), red-and-green macaws (Ara chloropterus, n = 5), Cuban parrots (Amazona leucocephala bahamensis, n = 27), lilac-crowned Amazons (Amazona finschi, n = 33) and thick-billed parrots (Rhynchopsitta pachyrhyncha, n = 32). The same analysis was carried out on 15 commercial parrot hand-feeding formulas. The mean FA concentration of the crop samples of each species ranged from 15% to 53% DM for crop samples and ranged from 6% to 22% for hand-feeding formulas. Long-chain FA represented over 92% of all FA in the crop samples and over 81% of all FA in the commercial formulas. Parrot species shared similarities in saturation profiles of crop samples, ranging between 13%-29% saturated fatty acids (SFA), 12%-40% monounsaturated fatty acids (MUFA) and 39%-58% polyunsaturated fatty acids (PUFA). All studied psittacines, except for the red-and-green macaw, were within the range of values for hand-rearing formulas. Palmitic acid was the most common SFA in scarlet macaws, red-and-green macaws, Cuban parrot, thick-billed parrot and in all but one commercial formula. Palmitic and stearic acids dominated the SFA in the samples of the Lilac-crowned Amazon. Oleic acid was the most common MUFA in all hand-feeding formulas as well as in the crop samples, except for the lilac-crowned amazon and the thick-billed parrot where vaccenic acid dominated. Linoleic acid was by far the most common PUFA found in the crop samples as well as in the hand-feeding formulas. PUFA were largely dominated by the n6 family, both in the crop samples and the formulas. The data presented on nestling diets of free-living parrot species provide a foundation for future researchers to test whether increasing FA concentration in hand-feeding formulas improves nestling development or if species-specific formulas will be advantageous.

Potential impact of neonicotinoid use on Northern bobwhite (Colinus virginianus) in Texas: A historical analysis.

The widespread use of neonicotinoid insecticides in recent years has led to increasing environmental concern, including impacts to avian populations. In Texas and across their range, Northern bobwhite (Colinus virginianus) habitat frequently overlaps cultivated cropland protected by neonicotinoids. To address the effects of neonicotinoid use on bobwhites in Texas, we conducted a historical analysis from 1978-2012 in Texas' ecological regions using quail count data collected from North American Breeding Bird Survey and Texas Parks and Wildlife Department, and neonicotinoid use data from the U.S. Geological Survey. We considered bobwhite abundance, neonicotinoid use, climate, and land-use variables in our analysis. Neonicotinoid use was significantly (p<0.05) negatively associated with bobwhite abundance in the High Plains, Rolling Plains, Gulf Coast Prairies & Marshes, Edwards Plateau, and South Texas Plains ecological regions in the time periods following neonicotinoid introduction (1994-2003) or after their widespread use (2004-2012). Our analyses suggest that the use of neonicotinoid insecticides may negatively affect bobwhite populations in crop-producing regions of Texas.

Blood Biochemical Values of Wild Scarlet Macaw ( Ara macao macao) Nestlings and Adults.

Blood biochemical values are useful as indicators of disease in veterinary practice and for health assessments of free-ranging animal populations. We analyzed blood biochemical values for free-living nestling and adult scarlet macaws ( Ara macao macao) in southeastern Peru with an Abaxis VetScan VS2 portable analyzer with Avian/Reptilian Profile Plus rotors. The resulting data were used to create provisional age-independent reference intervals for this instrument for wild scarlet macaw nestlings, calculate blood biochemical ranges for this instrument for wild adults, and examine age-related trends in nestlings. Levels of 11 parameters were studied: albumin, aspartate aminotransferase, calcium, creatine kinase, globulin, glucose, phosphorus, potassium, total protein, sodium, and uric acid. Bile acid levels were generally below the instrument detection level and were not evaluated. Most values and their trends with bird age were comparable to those observed in captive large macaw nestlings. Albumin, aspartate aminotransferase, globulin, glucose, total protein, sodium, and uric acid levels increased with nestling age to adulthood. Creatine kinase, phosphorus, and potassium concentrations decreased with age to adulthood. Calcium concentrations did not change between nestlings and adults. These changes in values with age are broadly in agreement with values in other avian species and likely reflect physiologic and developmental changes as nestlings mature.

Developing Cultural Competence through the Introduction of Medical Spanish into the Veterinary Curriculum.

The AAVMC has prioritized diversity as one of its core values. Its DiVersity Matters initiative is helping veterinary medicine prepare for the changing demographics of the United States. One example of the changing demographics is the growing Hispanic population. In 2013, the Texas A&M University College of Veterinary Medicine & Biomedical Sciences responded to the needs of this growing sector by introducing medical Spanish into the core curriculum for Doctor of Veterinary Medicine (DVM) students. The medical Spanish course takes place over 5 weeks during the second year of the curriculum, and is composed of lectures and group learning. While this may seem like a very compressed time frame for language learning, our goal is to provide students with basic medical vocabulary and a limited number of useful phrases. In this paper, we outline the implementation of a medical Spanish course in our curriculum, including our pedagogical approaches to the curricular design of the course, and an explanation of how we executed these approaches. We also discuss the successes and challenges that we have encountered, as well as our future plans for the course. We hope that the successes and challenges that we have encountered can serve as a model for others who plan to introduce a foreign language into their curriculum as a component of cultural competency.

Impact of Delayed Analysis in Avian Blood Biochemical Values Measured With the Abaxis VetScan VS2.

For biochemical analysis with a point-of-care biochemical analyzer, standard procedure is to analyze the sample as rapidly as possible (<1 hour) after venipuncture to minimize any changes in analyte concentrations that might occur over time. However, under some circumstances, such as when collecting blood at remote field sites, a longer delay may be unavoidable. This study evaluates the effect of delayed analysis time under unrefrigerated conditions on avian (psittacine) biochemical analyte concentrations obtained with the VetScan VS2 using Avian/Reptilian Profile Plus rotors. Venipuncture was performed on a group of 36 psittacine birds as part of routine health checks in a research aviary (Texas A&M University, College of Veterinary Medicine, College Station, TX, USA). Whole blood was kept at room temperature and analyzed at 4 time intervals: <1, 3, 6, and 24 hours after venipuncture. At 3 hours or less after collection, most biochemical parameters changed by <2%, with the exception of phosphorus (decrease of about -9%). Major increases by 24 hours after collection were observed in phosphorus (+67%) and potassium (+103%) concentrations, whereas aspartate aminotransferase (AST), uric acid, glucose, and sodium concentrations also showed statistically significant changes. Our results suggest that accurate information from analyses using the VetScan VS2 may be obtained for up to 3 hours after venipuncture without refrigeration, but researchers and clinicians do need to exercise care when interpreting blood chemistry analyte concentrations obtained after multihour delays between venipuncture and sample analysis.

Cultivable bacterial microbiota of northern bobwhite (Colinus virginianus): a new reservoir of antimicrobial resistance?

The northern bobwhite (Colinus virginianus) is an ecologically and economically important avian species. At the present time, little is known about the microbial communities associated with these birds. As the first step to create a quail microbiology knowledge base, the current study conducted an inventory of cultivable quail tracheal, crop, cecal, and cloacal microbiota and associated antimicrobial resistance using a combined bacteriology and DNA sequencing approach. A total of 414 morphologically unique bacterial colonies were selected from nonselective aerobic and anaerobic cultures, as well as selective and enrichment cultures. Analysis of the first 500-bp 16S rRNA gene sequences in conjunction with biochemical identifications revealed 190 non-redundant species-level taxonomic units, representing 160 known bacterial species and 30 novel species. The bacterial species were classified into 4 phyla, 14 orders, 37 families, and 59 or more genera. Firmicutes was the most commonly encountered phylum (57%) followed by Actinobacteria (24%), Proteobacteria (17%) and Bacteroidetes (0.02%). Extensive diversity in the species composition of quail microbiota was observed among individual birds and anatomical locations. Quail microbiota harbored several opportunistic pathogens, such as E. coli and Ps. aeruginosa, as well as human commensal organisms, including Neisseria species. Phenotypic characterization of selected bacterial species demonstrated a high prevalence of resistance to the following classes of antimicrobials: phenicol, macrolide, lincosamide, quinolone, and sulphate. Data from the current investigation warrant further investigation on the source, transmission, pathology, and control of antimicrobial resistance in wild quail populations.

Hematologic and plasma biochemical reference values of the horned guan, Oreophasis derbianus.

The horned guan (Oreophasis derbianus) is an endangered species with small and seriously fragmented wild populations. Breeding efforts during the last decade have maintained a slowly increasing captive population with the potential to play an important role in the recovery of the species. Clinical hematology and biochemistries are powerful tools to diagnose and monitor diseases in captive birds. Therefore, establishing hematologic and plasma biochemistry reference values will improve the medical management of this species. This study determines the reference values for 9 hematologic and 15 plasma biochemical variables for 27 male and 12 female, apparently healthy, captive horned guans from three institutions. Differences related to age, sex, and husbandry were identified but were usually small and clinically insignificant. These results should improve veterinary care of captive individuals of this species and provide comparative data for other species of cracids.

A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene.

Wild populations of northern bobwhites (Colinus virginianus; hereafter bobwhite) have declined across nearly all of their U.S. range, and despite their importance as an experimental wildlife model for ecotoxicology studies, no bobwhite draft genome assembly currently exists. Herein, we present a bobwhite draft de novo genome assembly with annotation, comparative analyses including genome-wide analyses of divergence with the chicken (Gallus gallus) and zebra finch (Taeniopygia guttata) genomes, and coalescent modeling to reconstruct the demographic history of the bobwhite for comparison to other birds currently in decline (i.e., scarlet macaw; Ara macao). More than 90% of the assembled bobwhite genome was captured within <40,000 final scaffolds (N50 = 45.4 Kb) despite evidence for approximately 3.22 heterozygous polymorphisms per Kb, and three annotation analyses produced evidence for >14,000 unique genes and proteins. Bobwhite analyses of divergence with the chicken and zebra finch genomes revealed many extremely conserved gene sequences, and evidence for lineage-specific divergence of noncoding regions. Coalescent models for reconstructing the demographic history of the bobwhite and the scarlet macaw provided evidence for population bottlenecks which were temporally coincident with human colonization of the New World, the late Pleistocene collapse of the megafauna, and the last glacial maximum. Demographic trends predicted for the bobwhite and the scarlet macaw also were concordant with how opposing natural selection strategies (i.e., skewness in the r-/K-selection continuum) would be expected to shape genome diversity and the effective population sizes in these species, which is directly relevant to future conservation efforts.

A multi-platform draft de novo genome assembly and comparative analysis for the Scarlet Macaw (Ara macao).

Data deposition to NCBI Genomes: This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession AMXX00000000 (SMACv1.0, unscaffolded genome assembly). The version described in this paper is the first version (AMXX01000000). The scaffolded assembly (SMACv1.1) has been deposited at DDBJ/EMBL/GenBank under the accession AOUJ00000000, and is also the first version (AOUJ01000000). Strong biological interest in traits such as the acquisition and utilization of speech, cognitive abilities, and longevity catalyzed the utilization of two next-generation sequencing platforms to provide the first-draft de novo genome assembly for the large, new world parrot Ara macao (Scarlet Macaw). Despite the challenges associated with genome assembly for an outbred avian species, including 951,507 high-quality putative single nucleotide polymorphisms, the final genome assembly (>1.035 Gb) includes more than 997 Mb of unambiguous sequence data (excluding N's). Cytogenetic analyses including ZooFISH revealed complex rearrangements associated with two scarlet macaw macrochromosomes (AMA6, AMA7), which supports the hypothesis that translocations, fusions, and intragenomic rearrangements are key factors associated with karyotype evolution among parrots. In silico annotation of the scarlet macaw genome provided robust evidence for 14,405 nuclear gene annotation models, their predicted transcripts and proteins, and a complete mitochondrial genome. Comparative analyses involving the scarlet macaw, chicken, and zebra finch genomes revealed high levels of nucleotide-based conservation as well as evidence for overall genome stability among the three highly divergent species. Application of a new whole-genome analysis of divergence involving all three species yielded prioritized candidate genes and noncoding regions for parrot traits of interest (i.e., speech, intelligence, longevity) which were independently supported by the results of previous human GWAS studies. We also observed evidence for genes and noncoding loci that displayed extreme conservation across the three avian lineages, thereby reflecting their likely biological and developmental importance among birds.

Error properties of Argos satellite telemetry locations using least squares and Kalman filtering.

Study of animal movements is key for understanding their ecology and facilitating their conservation. The Argos satellite system is a valuable tool for tracking species which move long distances, inhabit remote areas, and are otherwise difficult to track with traditional VHF telemetry and are not suitable for GPS systems. Previous research has raised doubts about the magnitude of position errors quoted by the satellite service provider CLS. In addition, no peer-reviewed publications have evaluated the usefulness of the CLS supplied error ellipses nor the accuracy of the new Kalman filtering (KF) processing method. Using transmitters hung from towers and trees in southeastern Peru, we show the Argos error ellipses generally contain <25% of the true locations and therefore do not adequately describe the true location errors. We also find that KF processing does not significantly increase location accuracy. The errors for both LS and KF processing methods were found to be lognormally distributed, which has important repercussions for error calculation, statistical analysis, and data interpretation. In brief, "good" positions (location codes 3, 2, 1, A) are accurate to about 2 km, while 0 and B locations are accurate to about 5-10 km. However, due to the lognormal distribution of the errors, larger outliers are to be expected in all location codes and need to be accounted for in the user's data processing. We evaluate five different empirical error estimates and find that 68% lognormal error ellipses provided the most useful error estimates. Longitude errors are larger than latitude errors by a factor of 2 to 3, supporting the use of elliptical error ellipses. Numerous studies over the past 15 years have also found fault with the CLS-claimed error estimates yet CLS has failed to correct their misleading information. We hope this will be reversed in the near future.

Philornis sp. bot fly larvae in free living scarlet macaw nestlings and a new technique for their extraction.

Bot fly larvae (Philornis genus) are obligate subcutaneous blood-feeding parasites of Neotropical birds including psittacines. We analyze twelve years of data on scarlet macaw (Ara macao) nestlings in natural and artificial nests in the lowland forests of southeastern Peru and report prevalence and intensity of Philornis parasitism. Bot fly prevalence was 28.9% while mean intensity was 5.0 larvae per infected chick. Prevalence in natural nests (11%, N=90 nestlings) was lower than in wooden nest-boxes (39%, N=57) and PVC boxes (39%, N=109). We describe a new technique of removing Philornis larvae using a reverse syringe design snake bite extractor. We compare this new technique to two other methods for removing bots from macaw chicks and find the new method the most suitable.

Nutritional levels of diets fed to captive Amazon parrots: does mixing seed, produce, and pellets provide a healthy diet?

Poor nutrition is a serious problem in captive psittacine birds. Seed-based diets are known to contain excess fat, low calcium:phosphorus ratios, and other nutrient deficiencies, whereas many consider nutritionally superior, formulated diets to be monotonous. As a result, many bird owners feed a mixture of seed, produce, and formulated diet. However, the nutritional contents of such mixed diets have rarely been evaluated. In this study, we describe the nutrient contents of diets consumed by 7 adult (>6 years old), captive Amazon parrots offered produce (50% fresh weight), formulated diet (25%), and seed (25%). Diets consumed were deficient in calcium, sodium, and iron and contained more than the recommended amount of fat. In addition, the birds chose foods that exacerbated these imbalances. Birds offered low-seed diets (60% pellet, 22% produce, 18% seed, wet weight) consumed diets with more fat than recommended but acceptable levels of calcium and all other nutrients measured, as well as acceptable calcium:phosphorus ratios. This suggests that small quantities of seeds may not result in nutritionally imbalanced diets. Birds fed 75% formulated diet and 25% produce consumed diets within the recommendations for nearly all measured nutrients, demonstrating that owners of psittacine birds should be encouraged to supplement manufactured diets with low energy-density, fresh produce items to provide stimulation and foraging opportunities without fear of causing major nutritional imbalances.

Testing for salmonella spp. In released parrots, wild parrots, and domestic fowl in lowland peru.

Wild animal populations face threats from pathogens from both intentionally released captive animals and domestic animals that accompany human settlements. From December 2004 through August 2005, we studied free living macaws and parrots in the Tambopata National Reserve in the Peruvian Amazon and semicaptive domestic fowl in human settlements adjacent to the reserve. In 1992-1993, large macaws (Aras spp.) that were serologically positive for Salmonella Pullorum were released into this reserve, which hosts dense populations of free-living parrots and macaws. We collected cloacal swabs from 64 birds and cultured for Salmonella spp. via standard laboratory methods. All 35 psittacines tested were culture negative for Salmonella spp., while 31% of 29 domestic fowl were culture positive. Our findings suggest that the domestic fowl that accompany human settlement in this region carry and shed Salmonella spp. that could threaten wild bird populations in and around the reserve.

Nutritional content of the diets of free-living scarlet macaw chicks in southeastern Peru.

To provide novel information on psittacine diets, we analyzed the texture, crude protein, crude fat, Ca, P (total), Mg, K, Na, S, Cu, Fe, and Zn concentrations of crop contents from 10 free-living scarlet macaw (Ara macao) chicks from lowland forests of southeastern Peru. We compared our results with nutrient concentrations of known wild parrot foods and published psittacine dietary recommendations to highlight similarities and differences and suggest future avenues of research. The diets were much coarser textured than those recommended for hand feeding. Soil in the diet provided an important source of Na, but Na levels were still lower than all recommendations. Concentrations of protein, Zn, K, Cu, and P (total) were near to or within the range of recommendations for captive psittacine birds. Fat, Ca, and Mg concentrations were greater in crop contents than in the average food plants and greater than published recommendations. The Na:K ratios were only one-twentieth of those recommended for young poultry. Future analyses should investigate the bioavailability of Fe, Ca, and Zn in these diets and the effects of varying concentrations of fat, Na, Ca, Mg, and Na:K ratio on psittacine growth and development.