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1.
Brain ; 141(3): 698-712, 2018 03 01.
Article in English | MEDLINE | ID: mdl-29365063

ABSTRACT

Polymicrogyria is a malformation of cortical development. The aetiology of polymicrogyria remains poorly understood. Using whole-exome sequencing we found de novo heterozygous missense GRIN1 mutations in 2 of 57 parent-offspring trios with polymicrogyria. We found nine further de novo missense GRIN1 mutations in additional cortical malformation patients. Shared features in the patients were extensive bilateral polymicrogyria associated with severe developmental delay, postnatal microcephaly, cortical visual impairment and intractable epilepsy. GRIN1 encodes GluN1, the essential subunit of the N-methyl-d-aspartate receptor. The polymicrogyria-associated GRIN1 mutations tended to cluster in the S2 region (part of the ligand-binding domain of GluN1) or the adjacent M3 helix. These regions are rarely mutated in the normal population or in GRIN1 patients without polymicrogyria. Using two-electrode and whole-cell voltage-clamp analysis, we showed that the polymicrogyria-associated GRIN1 mutations significantly alter the in vitro activity of the receptor. Three of the mutations increased agonist potency while one reduced proton inhibition of the receptor. These results are striking because previous GRIN1 mutations have generally caused loss of function, and because N-methyl-d-aspartate receptor agonists have been used for many years to generate animal models of polymicrogyria. Overall, our results expand the phenotypic spectrum associated with GRIN1 mutations and highlight the important role of N-methyl-d-aspartate receptor signalling in the pathogenesis of polymicrogyria.


Subject(s)
Mutation/genetics , Nerve Tissue Proteins/genetics , Polymicrogyria/genetics , Receptors, N-Methyl-D-Aspartate/genetics , Animals , Child , Child, Preschool , DNA Mutational Analysis , Excitatory Amino Acid Agonists/pharmacology , Family Health , Female , Glutamic Acid/pharmacology , Glycine/metabolism , Glycine/pharmacology , HEK293 Cells , Humans , Infant , Magnetic Resonance Imaging , Male , Membrane Potentials/genetics , Models, Molecular , Mutagenesis/genetics , N-Methylaspartate/pharmacology , Patch-Clamp Techniques , Polymicrogyria/diagnostic imaging , Rats , Transfection
2.
Eur J Hum Genet ; 24(3): 373-80, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26059843

ABSTRACT

Copy number variations are a common cause of intellectual disability (ID). Determining the contribution of copy number variants (CNVs), particularly gains, to disease remains challenging. Here, we report four males with ID with sub-microscopic duplications at Xp11.2 and review the few cases with overlapping duplications reported to date. We established the extent of the duplicated regions in each case encompassing a minimum of three known disease genes TSPYL2, KDM5C and IQSEC2 with one case also duplicating the known disease gene HUWE1. Patients with a duplication encompassing TSPYL2, KDM5C and IQSEC2 without gains of nearby SMC1A and HUWE1 genes have not been reported thus far. All cases presented with ID and significant deficits of speech development. Some patients also manifested behavioral disturbances such as hyperactivity and attention-deficit/hyperactivity disorder. Lymphoblastic cell lines from patients show markedly elevated levels of TSPYL2, KDM5C and SMC1A, transcripts consistent with the extent of their CNVs. The duplicated region in our patients contains several genes known to escape X-inactivation, including KDM5C, IQSEC2 and SMC1A. In silico analysis of expression data in selected gene expression omnibus series indicates that dosage of these genes, especially IQSEC2, is similar in males and females despite the fact they escape from X-inactivation in females. Taken together, the data suggest that gains in Xp11.22 including IQSEC2 cause ID and are associated with hyperactivity and attention-deficit/hyperactivity disorder, and are likely to be dosage-sensitive in males.


Subject(s)
Chromosome Duplication , Chromosomes, Human, X/genetics , Guanine Nucleotide Exchange Factors/genetics , Histone Demethylases/genetics , Neurodevelopmental Disorders/genetics , Nuclear Proteins/genetics , Adolescent , Behavior , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Child , Child, Preschool , Chromosomal Proteins, Non-Histone/genetics , Chromosomal Proteins, Non-Histone/metabolism , DNA-Binding Proteins , Female , Gene Expression Regulation , Humans , Infant , Infant, Newborn , Intellectual Disability/genetics , Male , Pedigree , RNA, Messenger/genetics , RNA, Messenger/metabolism , Young Adult
3.
Eur J Hum Genet ; 23(2): 224-8, 2015 Feb.
Article in English | MEDLINE | ID: mdl-24736733

ABSTRACT

Shprintzen-Goldberg syndrome (SGS) is a rare, systemic connective tissue disorder characterized by craniofacial, skeletal, and cardiovascular manifestations that show a significant overlap with the features observed in the Marfan (MFS) and Loeys-Dietz syndrome (LDS). A distinguishing observation in SGS patients is the presence of intellectual disability, although not all patients in this series present this finding. Recently, SGS was shown to be due to mutations in the SKI gene, encoding the oncoprotein SKI, a repressor of TGFß activity. Here, we report eight recurrent and three novel SKI mutations in eleven SGS patients. All were heterozygous missense mutations located in the R-SMAD binding domain, except for one novel in-frame deletion affecting the DHD domain. Adding our new findings to the existing data clearly reveals a mutational hotspot, with 73% (24 out of 33) of the hitherto described unrelated patients having mutations in a stretch of five SKI residues (from p.(Ser31) to p.(Pro35)). This implicates that the initial molecular testing could be focused on mutation analysis of the first half of exon 1 of SKI. As the majority of the known mutations are located in the R-SMAD binding domain of SKI, our study further emphasizes the importance of TGFß signaling in the pathogenesis of SGS.


Subject(s)
Arachnodactyly/genetics , Craniosynostoses/genetics , DNA-Binding Proteins/genetics , Marfan Syndrome/genetics , Mutation, Missense , Proto-Oncogene Proteins/genetics , Adolescent , Adult , Arachnodactyly/diagnosis , Binding Sites , Child , Child, Preschool , Craniosynostoses/diagnosis , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/metabolism , Exons , Female , Humans , Male , Marfan Syndrome/diagnosis , Middle Aged , Protein Binding , Proto-Oncogene Proteins/chemistry , Proto-Oncogene Proteins/metabolism , Smad Proteins/metabolism
4.
Am J Med Genet A ; 164A(7): 1695-701, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24715413

ABSTRACT

Axenfeld-Rieger syndrome (ARS) is an autosomal dominant disorder with variable expressivity. It is characterized by dysgenesis of the anterior segment of the eye together with dental, cardiac, and umbilical anomalies. There is a high incidence of secondary high tension glaucoma. It is a genetically heterogeneous condition due to deletion or mutations of FOXC1 (6p25) or PITX2 (4q25). We report on four unrelated patients with overlapping microdeletions encompassing PITX2 at 4q25. We compare the genotypes and phenotypes of these newly described ARS patients and discuss the involvement of contiguous genes. Patients 1, 2, and 3 had mild learning difficulties, not typically seen in patients with ARS. We implicate the adjacent neuronally expressed genes; NEUROG2, UGT8, NDST3, and PRSS12 as potentially causal. Our findings support the use of microarray analysis in ARS patients for full prognostic information in infants presenting with ARS-like phenotypes.


Subject(s)
Anterior Eye Segment/abnormalities , Chromosome Deletion , Chromosomes, Human, Pair 4 , Eye Abnormalities/diagnosis , Eye Abnormalities/genetics , Genetic Association Studies , Adult , Child , Child, Preschool , Chromosome Banding , Comparative Genomic Hybridization , Eye Diseases, Hereditary , Facies , Female , Humans , In Situ Hybridization, Fluorescence , Male , Phenotype
5.
J Med Genet ; 50(12): 838-47, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24092917

ABSTRACT

BACKGROUND: Borjeson-Forssman-Lehmann syndrome (BFLS) is an X-linked recessive intellectual disability (ID) disorder caused by mutations in the PHF6 gene and characterised by variable cognitive impairment, a distinct facial gestalt, obesity, and hypogonadism. Female carriers are usually not affected or only mildly affected, and so far only two females with de novo mutations or deletions in PHF6 have been reported. METHODS AND RESULTS: We performed PHF6 mutational analysis and screening for intragenic deletions and duplications by quantitative real-time PCR and multiplex ligation dependent probe amplification (MLPA) in female patients with variable ID and a distinct appearance of sparse hair, remarkable facial features, hypoplastic nails, and teeth anomalies. We detected two truncating mutations and two duplications of exons 4 and 5. Furthermore, two female patients with PHF6 deletions and a similar phenotype were identified by routine molecular karyotyping. Recently, two patients with a clinical diagnosis of Coffin-Siris syndrome in early infancy had been found to harbour mutations in PHF6, and their phenotype in advanced ages is now described. Further studies revealed skewed X-inactivation in blood lymphocytes, while it was normal in fibroblasts, thus indicating functional mosaicism. CONCLUSIONS: Our findings indicate that de novo defects in PHF6 in females result in a recognisable phenotype which might have been under-recognised so far and which comprises variable ID, a characteristic facial gestalt, hypoplastic nails, brachydactyly, clinodactyly mainly of fingers IV and V, dental anomalies, and linear skin hyperpigmentation. It shows overlap with BFLS but also additional distinct features, thus adding a new facet to this disorder.


Subject(s)
Carrier Proteins/genetics , Epilepsy/genetics , Face/abnormalities , Fingers/abnormalities , Growth Disorders/genetics , Hypogonadism/genetics , Mental Retardation, X-Linked/genetics , Mutation/genetics , Obesity/genetics , Adolescent , Adult , Child , DNA Mutational Analysis , Epilepsy/pathology , Face/pathology , Female , Fingers/pathology , Foot/pathology , Growth Disorders/pathology , Hand/pathology , Humans , Hypogonadism/pathology , Mental Retardation, X-Linked/pathology , Obesity/pathology , Phenotype , Repressor Proteins , Young Adult
6.
Nat Genet ; 44(11): 1243-8, 2012 Nov.
Article in English | MEDLINE | ID: mdl-23001123

ABSTRACT

Adenosine deaminases acting on RNA (ADARs) catalyze the hydrolytic deamination of adenosine to inosine in double-stranded RNA (dsRNA) and thereby potentially alter the information content and structure of cellular RNAs. Notably, although the overwhelming majority of such editing events occur in transcripts derived from Alu repeat elements, the biological function of non-coding RNA editing remains uncertain. Here, we show that mutations in ADAR1 (also known as ADAR) cause the autoimmune disorder Aicardi-Goutières syndrome (AGS). As in Adar1-null mice, the human disease state is associated with upregulation of interferon-stimulated genes, indicating a possible role for ADAR1 as a suppressor of type I interferon signaling. Considering recent insights derived from the study of other AGS-related proteins, we speculate that ADAR1 may limit the cytoplasmic accumulation of the dsRNA generated from genomic repetitive elements.


Subject(s)
Adenosine Deaminase/genetics , Autoimmune Diseases of the Nervous System/genetics , Interferon Type I , Nervous System Malformations/genetics , RNA, Double-Stranded/metabolism , Alu Elements/genetics , Animals , Exome , Gene Expression , Humans , Interferon Type I/genetics , Interferon Type I/metabolism , Mice , Mutation , Protein Conformation , RNA, Double-Stranded/genetics , RNA-Binding Proteins , Sequence Analysis, DNA , Signal Transduction , Structure-Activity Relationship
7.
J Med Genet ; 49(5): 303-6, 2012 May.
Article in English | MEDLINE | ID: mdl-22510445

ABSTRACT

BACKGROUND: Fraser syndrome (FS) is a autosomal recessive malformation syndrome characterised by cryptophthalmos, syndactyly and urogenital defects. FS is a genetically heterogeneous condition. Thus far, mutations in FRAS1 and FREM2 have been identified as cause of FS. Both FRAS1 and FREM2 encode extracellular matrix proteins that are essential for the adhesion between epidermal basement membrane and the underlying dermal connective tissues during embryonic development. Mutations in murine Grip1, which encodes a scaffolding protein that interacts with Fras1/Frem proteins, result in FS-like defects in mice. OBJECTIVE: To test GRIP1 for genetic variants in FS families that do not have mutations in FRAS1 and FREM2. METHODS AND RESULTS: In three unrelated families with parental consanguinity, GRIP1 mutations were found to segregate with the disease in an autosomal recessive manner (donor splice site mutation NM_021150.3:c.2113+1G→C in two families and a 4-bp deletion, NM_021150.3:c.1181_1184del in the third). RT-PCR analysis of the GRIP1 mRNA showed that the c.2113+1G→C splice mutation causes skipping of exon 17, leading to a frame shift and a premature stop of translation. CONCLUSION: Mutations in GRIP1 cause classic FS in humans.


Subject(s)
Carrier Proteins/genetics , Fraser Syndrome/genetics , Genetic Diseases, Inborn/genetics , Mutation , Nerve Tissue Proteins/genetics , Consanguinity , Female , Fetus/pathology , Frameshift Mutation , Fraser Syndrome/pathology , Genetic Diseases, Inborn/pathology , Humans , Male , Pedigree , Phenotype , Pregnancy
8.
Eur J Hum Genet ; 20(8): 863-9, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22333898

ABSTRACT

Holt-Oram syndrome (HOS) is a rare autosomal dominant heart-hand syndrome due to mutations in the TBX5 transcription factor. Affected individuals can have structural cardiac defects and/or conduction abnormalities, and exclusively upper limb defects (typically bilateral, asymmetrical radial ray defects). TBX5 mutations reported include nonsense, missense, splicing mutations and exon deletions. Most result in a null allele and haploinsufficiency, but some impair nuclear localisation of TBX5 protein or disrupt its interaction with co-factors and downstream targets. We present a five generation family of nine affected individuals with an atypical HOS phenotype, consisting of ulnar ray defects (ulnar hypoplasia, short fifth fingers with clinodactyly) and very mild radial ray defects (short thumbs, bowing of the radius and dislocation of the radial head). The cardiac defects seen are those more rarely reported in HOS (atrioventricular septal defect, hypoplastic left heart syndrome, mitral valve disease and pulmonary stenosis). Conduction abnormalities include atrial fibrillation, atrial flutter and sick sinus syndrome. TBX5 mutation screening (exons 3-10) identified no mutations. Array comparative genomic hybridisation (CGH) revealed a 48 kb duplication at 12q24.21, encompassing exons 2-9 of the TBX5 gene, with breakpoints within introns 1-2 and 9-10. The duplication segregates with the phenotype in the family, and is likely to be pathogenic. This is the first known report of an intragenic duplication of TBX5 and its clinical effects; an atypical HOS phenotype. Further functional studies are needed to establish the effects of the duplication and pathogenic mechanism. All typical/atypical HOS cases should be screened for TBX5 exon duplications.


Subject(s)
Abnormalities, Multiple/genetics , Family , Gene Duplication , Heart Defects, Congenital/genetics , Heart Septal Defects, Atrial/genetics , Lower Extremity Deformities, Congenital/genetics , Phenotype , T-Box Domain Proteins/genetics , Upper Extremity Deformities, Congenital/genetics , Abnormalities, Multiple/diagnosis , Adult , Chromosomes, Human, Pair 12 , Comparative Genomic Hybridization , Computational Biology/methods , DNA Copy Number Variations , Female , Heart Defects, Congenital/diagnosis , Heart Septal Defects, Atrial/diagnosis , Humans , Lower Extremity Deformities, Congenital/diagnosis , Male , Upper Extremity Deformities, Congenital/diagnosis , Young Adult
9.
J Med Genet ; 49(1): 21-6, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22167768

ABSTRACT

BACKGROUND: Germline mutations in the CHRNG gene that encodes the γ subunit of the embryonal acetylcholine receptor may cause the non-lethal Escobar variant (EVMPS) or the lethal form (LMPS) of multiple pterygium syndrome (MPS). In addition CHRNG mutations and mutations in other components of the embryonal acetylcholine receptor may present with fetal akinesia deformation sequence (FADS) without pterygia. METHODS: In order to elucidate further the role of CHRNG mutations in MPS/FADS, this study evaluated the results of CHRNG mutation analysis in 100 families with a clinical diagnosis of MPS/FADS. RESULTS: CHRNG mutations were identified in 11/41 (27%) of families with EVMPS and 5/59 (8%) with LMPS/FADS. Most patients with a detectable CHRNG mutation (21 of 24 (87.5%)) had pterygia but no CHRNG mutations were detected in the presence of central nervous system anomalies. DISCUSSION: The mutation spectrum was similar in EVMPS and LMPS/FADS kindreds and EVMPS and LMPS phenotypes were observed in different families with the same CHRNG mutation. Despite this intrafamilial variability, it is estimated that there is a 95% chance that a subsequent sibling will have the same MPS phenotype (EVMPS or LMPS) as the proband (though concordance is less for more distant relatives). Based on these findings, a molecular genetic diagnostic pathway for the investigation of MPS/FADS is proposed.


Subject(s)
Abnormalities, Multiple/genetics , Malignant Hyperthermia/genetics , Pterygium/genetics , Receptors, Nicotinic/genetics , Abnormalities, Multiple/diagnostic imaging , Abnormalities, Multiple/mortality , Cohort Studies , DNA Mutational Analysis , Female , Fetal Growth Retardation/genetics , Genetic Association Studies , Genotype , Humans , Infant , Infant, Newborn , Malignant Hyperthermia/diagnostic imaging , Malignant Hyperthermia/mortality , Mutation , Pregnancy , Pterygium/diagnostic imaging , Pterygium/mortality , Skin Abnormalities , Ultrasonography, Prenatal
10.
Am J Hum Genet ; 89(4): 551-63, 2011 Oct 07.
Article in English | MEDLINE | ID: mdl-21981781

ABSTRACT

Persons with neurodevelopmental disorders or autism spectrum disorder (ASD) often harbor chromosomal microdeletions, yet the individual genetic contributors within these regions have not been systematically evaluated. We established a consortium of clinical diagnostic and research laboratories to accumulate a large cohort with genetic alterations of chromosomal region 2q23.1 and acquired 65 subjects with microdeletion or translocation. We sequenced translocation breakpoints; aligned microdeletions to determine the critical region; assessed effects on mRNA expression; and examined medical records, photos, and clinical evaluations. We identified a single gene, methyl-CpG-binding domain 5 (MBD5), as the only locus that defined the critical region. Partial or complete deletion of MBD5 was associated with haploinsufficiency of mRNA expression, intellectual disability, epilepsy, and autistic features. Fourteen alterations, including partial deletions of noncoding regions not typically captured or considered pathogenic by current diagnostic screening, disrupted MBD5 alone. Expression profiles and clinical characteristics were largely indistinguishable between MBD5-specific alteration and deletion of the entire 2q23.1 interval. No copy-number alterations of MBD5 were observed in 7878 controls, suggesting MBD5 alterations are highly penetrant. We surveyed MBD5 coding variations among 747 ASD subjects compared to 2043 non-ASD subjects analyzed by whole-exome sequencing and detected an association with a highly conserved methyl-CpG-binding domain missense variant, p.79Gly>Glu (c.236G>A) (p = 0.012). These results suggest that genetic alterations of MBD5 cause features of 2q23.1 microdeletion syndrome and that this epigenetic regulator significantly contributes to ASD risk, warranting further consideration in research and clinical diagnostic screening and highlighting the importance of chromatin remodeling in the etiology of these complex disorders.


Subject(s)
Child Development Disorders, Pervasive/genetics , Chromosomes, Human, Pair 2 , DNA-Binding Proteins/genetics , Epilepsy/genetics , Gene Deletion , Intellectual Disability/genetics , Adolescent , Adult , Case-Control Studies , Child , Child, Preschool , CpG Islands , Epigenesis, Genetic , Female , Humans , Male , Phenotype , Syndrome
11.
Nephron Physiol ; 119(3): p40-8, 2011.
Article in English | MEDLINE | ID: mdl-21849804

ABSTRACT

BACKGROUND/AIMS: Mutations in the inwardly-rectifying K+ channel KCNJ10/Kir4.1 cause an autosomal recessive disorder characterized by epilepsy, ataxia, sensorineural deafness and tubulopathy (EAST syndrome). KCNJ10 is expressed in the kidney distal convoluted tubule, cochlear stria vascularis and brain glial cells. Patients clinically diagnosed with EAST syndrome were genotyped to identify and study mutations in KCNJ10. METHODS: Patient DNA was sequenced and new mutations identified. Mutant and wild-type KCNJ10 constructs were cloned and heterologously expressed in Xenopus oocytes. Whole-cell K+ currents were measured by two-electrode voltage clamping. RESULTS: Three new mutations in KCNJ10 (p.R65C, p.F75L and p.V259fs259X) were identified, and mutation p.R297C, previously only seen in a compound heterozygous patient, was found in a homozygous state. Wild-type human KCNJ10-expressing oocytes showed strongly inwardly-rectified currents, which by comparison were significantly reduced in all the mutants (p < 0.001). Specific inhibition of KCNJ10 currents by Ba2+ demonstrated residual function in all mutant channels (p < 0.05) but V259X. CONCLUSION: This study confirms that EAST syndrome can be caused by many different mutations in KCNJ10 that significantly reduce K+ conductance. EAST syndrome should be considered in any patient with a renal Gitelman-like phenotype with additional neurological signs and symptoms like ataxia, epilepsy or sensorineural deafness.


Subject(s)
Hearing Loss, Sensorineural/genetics , Hearing Loss, Sensorineural/physiopathology , Intellectual Disability/genetics , Intellectual Disability/physiopathology , Potassium Channels, Inwardly Rectifying/physiology , Seizures/genetics , Seizures/physiopathology , Amino Acid Sequence , Animals , Base Sequence , Female , Genotype , Hearing Loss, Sensorineural/metabolism , Humans , Intellectual Disability/metabolism , Kidney Tubules, Distal/metabolism , Male , Molecular Sequence Data , Mutation , Oocytes/physiology , Patch-Clamp Techniques , Potassium Channels, Inwardly Rectifying/chemistry , Potassium Channels, Inwardly Rectifying/genetics , Potassium Channels, Inwardly Rectifying/metabolism , Seizures/metabolism , Sequence Analysis, DNA , Xenopus laevis/genetics , Xenopus laevis/physiology
12.
Am J Hum Genet ; 89(1): 67-81, 2011 Jul 15.
Article in English | MEDLINE | ID: mdl-21741611

ABSTRACT

Craniosynostosis and supernumerary teeth most often occur as isolated developmental anomalies, but they are also separately manifested in several malformation syndromes. Here, we describe a human syndrome featuring craniosynostosis, maxillary hypoplasia, delayed tooth eruption, and supernumerary teeth. We performed homozygosity mapping in three unrelated consanguineous Pakistani families and localized the syndrome to a region in chromosome 9. Mutational analysis of candidate genes in the region revealed that all affected children harbored homozygous missense mutations (c.662C>G [p.Pro221Arg], c.734C>G [p.Ser245Cys], or c.886C>T [p.Arg296Trp]) in IL11RA (encoding interleukin 11 receptor, alpha) on chromosome 9p13.3. In addition, a homozygous nonsense mutation, c.475C>T (p.Gln159X), and a homozygous duplication, c.916_924dup (p.Thr306_Ser308dup), were observed in two north European families. In cell-transfection experiments, the p.Arg296Trp mutation rendered the receptor unable to mediate the IL11 signal, indicating that the mutation causes loss of IL11RA function. We also observed disturbed cranial growth and suture activity in the Il11ra null mutant mice, in which reduced size and remodeling of limb bones has been previously described. We conclude that IL11 signaling is essential for the normal development of craniofacial bones and teeth and that its function is to restrict suture fusion and tooth number. The results open up the possibility of modulation of IL11 signaling for the treatment of craniosynostosis.


Subject(s)
Craniosynostoses/genetics , Interleukin-11/metabolism , Signal Transduction , Tooth Eruption/genetics , Tooth, Supernumerary/genetics , Animals , Cell Line , Child , Child, Preschool , Chromosome Mapping , Codon, Nonsense , Computational Biology , DNA Mutational Analysis , Down-Regulation , Female , Gene Expression Regulation, Developmental , Humans , Interleukin-11/genetics , Male , Mice , Mice, Inbred C57BL , Pedigree , Tooth, Supernumerary/pathology , Transcription Factors/genetics
13.
Pediatr Neurol ; 45(1): 49-53, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21723461

ABSTRACT

Bilateral frontoparietal polymicrogyria is an autosomal recessive inherited human brain malformation with abnormal cortical lamination. The affected cortex appears to consist of numerous small gyri, with scalloping of the cortical-white matter junction. There are associated white matter, brain stem, and cerebellar changes. Affected individuals manifest mental retardation, language impairment, motor developmental delay, and seizure disorder. GPR56 is the causative gene. Here we report a novel missense mutation of GPR56, E496K, identified in a consanguineous pedigree with bilateral frontoparietal polymicrogyria. GPR56 protein is cleaved at the G-protein-coupled receptor proteolytic site into an N- and a C-terminal fragment, named GPR56(N) and GPR56(C), respectively. E496K is located in GPR56(C). Further biochemical studies reveal that this mutation affects GPR56(C) cell surface expression similar to the effect of a previously reported mutation, R565W. These results provide further insights into how GPR56 mutation causes neurologic disease.


Subject(s)
Frontal Lobe/pathology , Malformations of Cortical Development , Mutation/genetics , Nervous System Malformations , Parietal Lobe/pathology , Receptors, G-Protein-Coupled/genetics , Child, Preschool , Humans , Magnetic Resonance Imaging , Male , Malformations of Cortical Development/complications , Malformations of Cortical Development/genetics , Malformations of Cortical Development/pathology , Nervous System Malformations/complications , Nervous System Malformations/genetics , Nervous System Malformations/pathology
14.
Arch Neurol ; 68(6): 814-21, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21670407

ABSTRACT

BACKGROUND: Haploinsufficiency of PMP22 causes hereditary neuropathy with liability to pressure palsies. However, the biological functions of the PMP22 protein in humans have largely been unexplored owing to the absence of patients with PMP22-null mutations. OBJECTIVE: To investigate the function of PMP22 in the peripheral nervous system by studying a boy without the PMP22 gene and mice without the Pmp22 gene. DESIGN: The clinical and pathological features of a patient with a PMP22 homozygous deletion are compared with those of Pmp22-null mice. SETTING: Clinical evaluation was performed at tertiary hospitals in the United Kingdom. Molecular diagnosis was performed at the West Midlands Regional Genetics Laboratory. Immunohistochemistry and electron microscopy analyses were conducted at Wayne State University, Detroit, Michigan. Analysis of the Pmp22 +/- and null mice was performed at Vanderbilt University, Nashville, Tennessee. PARTICIPANT: A 7-year-old boy without the PMP22 gene. RESULTS: Motor and sensory deficits in the proband were nonlength-dependent. Weakness was found in cranial muscles but not in the limbs. Large fiber sensory modalities were profoundly abnormal, which started prior to the maturation of myelin. This is in line with the temporal pattern of PMP22 expression predominantly in cranial motor neurons and dorsal root ganglia during embryonic development, becoming undetectable in adulthood. Moreover, there were conspicuous maturation defects of myelinating Schwann cells; these defects were more significant in motor nerve fibers than in sensory nerve fibers. CONCLUSIONS: Taken together, the data suggest that PMP22 is important for the normal function of neurons that express PMP22 during early development, such as cranial motor neurons and spinal sensory neurons. Moreover, PMP22 deficiency differentially affects myelination between motor and sensory nerves, which may have contributed to the unique clinical phenotype in the patient with an absence of PMP22.


Subject(s)
Demyelinating Diseases/genetics , Gene Deletion , Hereditary Sensory and Motor Neuropathy/genetics , Myelin Proteins/deficiency , Myelin Proteins/genetics , Animals , Child , Demyelinating Diseases/metabolism , Disease Models, Animal , Hereditary Sensory and Motor Neuropathy/metabolism , Humans , Male , Mice , Mice, Knockout
16.
Hum Mutat ; 31(8): E1587-93, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20648631

ABSTRACT

Cleidocranial Dysplasia (CCD) is an autosomal dominant skeletal disorder characterized by hypoplastic or absent clavicles, increased head circumference, large fontanels, dental anomalies, and short stature. Hand malformations are also common. Mutations in RUNX2 cause CCD, but are not identified in all CCD patients. In this study we screened 135 unrelated patients with the clinical diagnosis of CCD for RUNX2 mutations by sequencing analysis and demonstrated 82 mutations 48 of which were novel. By quantitative PCR we screened the remaining 53 unrelated patients for copy number variations in the RUNX2 gene. Heterozygous deletions of different size were identified in 13 patients, and a duplication of the exons 1 to 4 of the RUNX2 gene in one patient. Thus, heterozygous deletions or duplications affecting the RUNX2 gene may be present in about 10% of all patients with a clinical diagnosis of CCD which corresponds to 26% of individuals with normal results on sequencing analysis. We therefore suggest that screening for intragenic deletions and duplications by qPCR or MLPA should be considered for patients with CCD phenotype in whom DNA sequencing does not reveal a causative RUNX2 mutation.


Subject(s)
Cleidocranial Dysplasia/genetics , Gene Deletion , DNA Mutational Analysis , Heterozygote , Humans , Polymerase Chain Reaction
17.
Neuromuscul Disord ; 20(4): 241-50, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20207543

ABSTRACT

Merosin deficient congenital muscular dystrophy 1A (MDC1A) results from mutations in the LAMA2 gene. We report 51 patients with MDC1A and examine the relationship between degree of merosin expression, genotype and clinical features. Thirty-three patients had absence of merosin and 13 showed some residual merosin. Compared to the residual merosin group, patients with absent merosin had an earlier presentation (<7days) (P=0.0073), were more likely to lack independent ambulation (P=0.0215), or require enteral feeding (P=0.0099) and ventilatory support (P=0.0354). We identified 33 novel LAMA2 mutations; these were distributed throughout the gene in patients with absent merosin, with minor clusters in exon 27, 14, 25 and 26 (55% of mutations). Patients with residual merosin often carried at least one splice site mutation and less frequently frameshift mutations. This large study identified novel LAMA2 mutations and highlights the role of immunohistochemical studies for merosin status in predicting clinical severity of MDC1A.


Subject(s)
Laminin/genetics , Muscular Dystrophies/genetics , Muscular Dystrophies/pathology , Mutation/genetics , Adolescent , Child , Child, Preschool , DNA Mutational Analysis , Disease Progression , Exons/genetics , Frameshift Mutation/genetics , Genetic Testing , Genotype , Humans , Immunohistochemistry , Infant , Laminin/metabolism , Mobility Limitation , Muscular Dystrophies/physiopathology , Phenotype , RNA Splice Sites/genetics , Respiratory Paralysis , Young Adult
18.
Eur J Hum Genet ; 18(2): 157-62, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19738637

ABSTRACT

Aristaless-related homeobox (ARX) gene mutations cause a diverse spectrum of disorders of the human brain, including lissencephaly, various forms of epilepsy and non-syndromic mental retardation. We have identified a novel mutation, c.81C>G (p.Y27X), within the ARX gene in a family with two affected male cousins. One of the boys was diagnosed with an early infantile epileptic encephalopathy also known as Ohtahara syndrome, whereas his cousin had been diagnosed with West syndrome (WS). Both patients have normal genitalia and neither have lissencephaly. The ARX mutation identified is predicted to yield a severely truncated protein of only 26 amino acids and can be considered as a null mutation. Somewhat surprisingly, however, it does not yield the X-linked lissencephaly with ambiguous genitalia (XLAG) syndrome. We proposed that the ARX mRNA translation re-initiated at the next AUG codon at position c.121-123 (aa 41) and, thus, partly rescued these patients from XLAG. Our in vitro studies show that this N-terminally truncated ARX protein (p.M41_C562) is detected by western immunoblot in lysates from cells transiently transfected with an ARX over-expression construct containing the c.81C>G mutation. Although these findings widen the spectrum of clinical phenotypes because of mutations in the ARX gene, they also emphasize the molecular pathogenetic effect of individual mutations as well as the effect of genetic background resulting in intrafamilial clinical heterogeneity for these mutations.


Subject(s)
Homeodomain Proteins/genetics , Mental Retardation, X-Linked/genetics , Mutation , Spasms, Infantile/genetics , Transcription Factors/genetics , Adult , Arrhythmias, Cardiac/genetics , Base Sequence , Cesarean Section , Child , DNA Mutational Analysis , Epilepsy/genetics , Female , Genetic Carrier Screening , Humans , Infant, Newborn , Intellectual Disability/genetics , Male , Pedigree , Pregnancy , Sequence Deletion
19.
Eur J Hum Genet ; 18(2): 163-70, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19809484

ABSTRACT

Six submicroscopic deletions comprising chromosome band 2q23.1 in patients with severe mental retardation (MR), short stature, microcephaly and epilepsy have been reported, suggesting that haploinsufficiency of one or more genes in the 2q23.1 region might be responsible for the common phenotypic features in these patients. In this study, we report the molecular and clinical characterisation of nine new 2q23.1 deletion patients and a clinical update on two previously reported patients. All patients were mentally retarded with pronounced speech delay and additional abnormalities including short stature, seizures, microcephaly and coarse facies. The majority of cases presented with stereotypic repetitive behaviour, a disturbed sleep pattern and a broad-based gait. These features led to the initial clinical impression of Angelman, Rett or Smith-Magenis syndromes in several patients. The overlapping 2q23.1 deletion region in all 15 patients comprises only one gene, namely, MBD5. Interestingly, MBD5 is a member of the methyl CpG-binding domain protein family, which also comprises MECP2, mutated in Rett's syndrome. Another gene in the 2q23.1 region, EPC2, was deleted in 12 patients who had a broader phenotype than those with a deletion of MBD5 only. EPC2 is a member of the polycomb protein family, involved in heterochromatin formation and might be involved in causing MR. Patients with a 2q23.1 microdeletion present with a variable phenotype and the diagnosis should be considered in mentally retarded children with coarse facies, seizures, disturbed sleeping patterns and additional specific behavioural problems.


Subject(s)
Chromosomes, Human, Pair 2/genetics , Intellectual Disability/genetics , Sequence Deletion , Angelman Syndrome/genetics , Cesarean Section , Child , Chromosome Mapping , Female , Humans , Infant, Newborn , Intensive Care Units, Neonatal , Learning Disabilities/genetics , Male , Phenotype , Rett Syndrome/genetics
20.
Nat Genet ; 41(7): 829-32, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19525956

ABSTRACT

Aicardi-Goutières syndrome is a mendelian mimic of congenital infection and also shows overlap with systemic lupus erythematosus at both a clinical and biochemical level. The recent identification of mutations in TREX1 and genes encoding the RNASEH2 complex and studies of the function of TREX1 in DNA metabolism have defined a previously unknown mechanism for the initiation of autoimmunity by interferon-stimulatory nucleic acid. Here we describe mutations in SAMHD1 as the cause of AGS at the AGS5 locus and present data to show that SAMHD1 may act as a negative regulator of the cell-intrinsic antiviral response.


Subject(s)
Brain Diseases, Metabolic, Inborn/genetics , Immunity, Innate , Monomeric GTP-Binding Proteins/genetics , Amino Acid Substitution , Brain Diseases, Metabolic, Inborn/immunology , Humans , Monomeric GTP-Binding Proteins/immunology , SAM Domain and HD Domain-Containing Protein 1
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