A multi-taxonomic framework for assessing relative petrochemical vulnerability of marine biodiversity in the Gulf of Mexico.

A fundamental understanding of the impact of petrochemicals and other stressors on marine biodiversity is critical for effective management, restoration, recovery, and mitigation initiatives. As species-specific information on levels of petrochemical exposure and toxicological response are lacking for the majority of marine species, a trait-based assessment to rank species vulnerabilities to petrochemical activities in the Gulf of Mexico can provide a more comprehensive and effective means to prioritize species, habitats, and ecosystems for improved management, restoration and recovery. To initiate and standardize this process, we developed a trait-based framework, applicable to a wide range of vertebrate and invertebrate species, that can be used to rank relative population vulnerabilities of species to petrochemical activities in the Gulf of Mexico. Through expert consultation, 18 traits related to likelihood of exposure, individual sensitivity, and population resilience were identified and defined. The resulting multi-taxonomic petrochemical vulnerability framework can be adapted and applied to a wide variety of species groups and geographic regions. Additional recommendations and guidance on the application of the framework to rank species vulnerabilities under specific petrochemical exposure scenarios, management needs or data limitations are also discussed.

Adaptive introgression enables evolutionary rescue from extreme environmental pollution.

Radical environmental change that provokes population decline can impose constraints on the sources of genetic variation that may enable evolutionary rescue. Adaptive toxicant resistance has rapidly evolved in Gulf killifish (Fundulus grandis) that occupy polluted habitats. We show that resistance scales with pollution level and negatively correlates with inducibility of aryl hydrocarbon receptor (AHR) signaling. Loci with the strongest signatures of recent selection harbor genes regulating AHR signaling. Two of these loci introgressed recently (18 to 34 generations ago) from Atlantic killifish (F. heteroclitus). One introgressed locus contains a deletion in AHR that confers a large adaptive advantage [selection coefficient (s) = 0.8]. Given the limited migration of killifish, recent adaptive introgression was likely mediated by human-assisted transport. We suggest that interspecies connectivity may be an important source of adaptive variation during extreme environmental change.

Genome-wide characterization of tetrahymena thermophila chromosome breakage sites. I. Cloning and identification of functional sites.

The chromosomes of the macronuclear (expressed) genome of Tetrahymena thermophila are generated by developmental fragmentation of the five micronuclear (germline) chromosomes. This fragmentation is site specific and directed by a conserved 15-bp chromosome breakage sequence (Cbs element). This article reports the construction of a library enriched for chromosome breakage junctions and the development of a successful scheme for the genome-wide isolation and characterization of functional Cbs junctions. Twenty-three new Cbs junctions were characterized and each was assigned to a specific micronuclear chromosome or chromosome arm. Two distinct previously unreported variant chromosome breakage sequences were found, each in two or more functional Cbs elements. Analysis of natural Cbs junctions confirmed that microheterogeneity in the macronuclear telomere addition site is associated with chromosome fragmentation. The physical and genetic characterization of these functional chromosome breakage junctions is reported in the accompanying article in this issue. The whole-genome shotgun sequencing and auto-assembly phase of the Tetrahymena Genome Initiative has recently been completed at The Institute for Genome Research (TIGR). By providing unique sequence from the natural ends of macronuclear chromosomes, Cbs junctions characterized in the work reported here will serve as useful sequence tags for relating macro- and micronuclear genetic, physical, and sequence maps.

Dynamic behavior of chiral sulfonimidoyl-substituted allyl and alkyl (dimethylamino)titanium(IV) complexes: metallotropic shift, reversible beta-hydride elimination/reinsertion, and ab initio calculations of allyl and alkyl aminosulfoxonium ylides.

Variable-temperature (1)H and (13)C NMR spectroscopy of the sulfonimidoyl-substituted allyltitanium(IV) complexes E-1a-c and Z-1a-c, which carry diethylamino groups at the Ti atom, revealed a fast 1,3-C,N-shift of the Ti atom, leading to an equilibrium between the epimeric Calpha-titanium allyl complexes A and C and the N-titanium allyl aminosulfoxonium ylide B. Based on these findings a model for the reactions of E-1a-c and Z-1a-c with aldehydes is proposed, which features regio- and diastereoselective reactions of the N-titanium ylide B at the alpha-position and the Calpha-titanium complex A at the gamma-position. Model ab initio calculations of the methylene and allyl (dimethylamino)sulfoxonium ylides 10 and 14, respectively, revealed short Calpha-S bonds, a stabilization by both electrostatic interaction and negative hyperconjugation, and a low Calpha-S rotational barrier. The ylides preferentially adopt Calpha-S and Calpha-N conformations in which the lone pair orbital at the Calpha atom is periplanar to the S=O bond and that at the N atom periplanar to the Calpha-Ph bond. Variable-temperature NMR spectroscopy of the sulfonimidoyl-substituted alkyltitanium(IV) complex 16, which carries diethylamino groups at the Ti atom, revealed a dynamic behavior leading to a complete topomerization of all four methylene hydrogens of the Calpha-ethyl groups. Two fast processes are held responsible for the topomerization of the hydrogens of 16. The first one is a reversible intramolecular beta-hydride elimination/alkene-Ti-H insertion with the intermediate formation of a complex between (Et(2)N)TiH and a 1-alkenyl sulfoximine, and the second one consists of a reversible 1,3-C,N-shift of the Ti atom in combination with a Calpha-S bond rotation. Interestingly, the room-temperature NMR spectra of the corresponding sulfonimidoyl-substituted alkyltitanium(IV) complex 17, which carries isopropoxy groups at the Ti atom, give no indication of a similar dynamic behavior of this complex.

Assessing precollege science education outreach initiatives: a funder's perspective.

We describe an assessment of the collective impact of 35 grants that the Howard Hughes Medical Institute (HHMI) made to biomedical research institutions in 1999 to support precollege science education outreach programs. Data collected from funded institutions were compared with data from a control group of institutions that had advanced to the last stage of review but had not been funded. The survey instrument and the results reveal outcomes and impacts that HHMI considers relevant for these programs. The following attributes are considered: ability to secure additional, non-HHMI funding; institution buy-in as measured by gains in dedicated space and staff; enhancement of the program director's career; number and adoption of educational products developed; number of related publications and awards; percentage of programs for which teachers received course credit; increase in science content knowledge; and increase in student motivation to study science.

Ribosomal RNA transcription during macronuclear development ofTetrahymena thermophila.

Conjugation inTetrahymena, as in other ciliated protozoa is both a necessary tool for genetic studies and a potential model system in development. Conjugation is an ordered sequence of events which involves pair formation between two cells of different mating types followed by a precise sequence of nuclear events leading to the establishment of a new recombinant germinal nucleus (micronucleus) and then to the development of a new somatic nucleus (macronnucleus) from the germinal nucleus. The whole process takes about 20 h at 30°C and can be performed with large volumes of cells.The synthesis of ribosomal RNA during macronuclear development was studied in cultures of conjugatingTetrahymena thermophila by following the incorporation of3H-uridine into whole cells and purified ribosomal and pre-ribosomal RNA as well as by measuring bulk-RNA accumulation. In starving cultures and conjugating cultures refed with growth medium during late conjugation, some (background) ribosomal RNA synthesis was detectable 11-12 h after mixing the cells, which is the time when conjugating cells come apart but the macronnucleus is still developing. However, the major burst of rRNA accumulation occurred 13-18 h in refed conjugants.Observation of the conjugating cells by transmission electron microscopy showed that development of nucleoli took place in the macronuclear analagen concomitantly with the major burst of ribosomal RNA synthesis (13-18 h). A nucleolar organization similar to that found in vegetative cells was attained in the macronuclear anlagen 18 h after mixing of the cells.