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1.
J Phys Chem A ; 127(14): 3114-3122, 2023 Apr 13.
Article in English | MEDLINE | ID: mdl-37010238

ABSTRACT

Many years ago, the gas-phase infrared fundamental intensities of Cl2CS were determined within experimental error from the experimental intensities and frequencies of F2CO, Cl2CO, and F2CS. An additive characteristic substituent shift relationship between atomic polar tensors of these molecules formed the basis for these calculations. Here, QCISD/cc-pVTZ-level Quantum Theory of Atoms In Molecules (QTAIM) individual charge, charge transfer, and polarization contributions to these atomic polar tensor elements are shown to obey the same basic relationship for the extended X2CY (Y = O, S; X = H, F, Cl, Br) family of molecules. QTAIM charge and polarization contributions, as well as the total equilibrium dipole moments of the X2CY molecules, also follow this characteristic substituent shift model. The root-mean-sqaure error for the 231 estimates of these parameters is 0.14 e or only about 1% of the total 10 e range of the Atomic Polar Tensor (APT) contributions determined from the wave functions. The substituent effect APT contribution estimates were used to calculate the infrared intensities of the X2CY molecules. Although one serious discrepancy was observed for one of the CH stretching vibrations of H2CS, accurate values were within 45 km·mol-1 or about 7% of the 656 km·mol-1 intensity range predicted by the QCISD/cc-pVTZ wave functions. Hirshfeld charge, charge transfer, and polarization contributions are also found to follow this model, although their charge parameters do not follow electronegativity expectations.

2.
J Phys Chem A ; 126(48): 8945-8954, 2022 Dec 08.
Article in English | MEDLINE | ID: mdl-36417362

ABSTRACT

The Interacting Quantum Atoms (IQA) energy decomposition scheme divides the total energy of a molecule into intra- and interatomic contributions. While the former relates to the kinetic and potential energies of electrons inside a unique individual atomic basin, the latter contains the Coulomb and exchange-correlation potentials between electrons from two atomic basins. Considering that the molecular energy is a sum of IQA contributions, the Hessian matrix can also be written as a sum of "IQA Hessian" matrices, whose elements are second derivatives of IQA terms. Herein, we present a mathematical formalism for the IQA decomposition of force constants revealing their energetic origins. The method consists of adding a new dimension to the Hessian matrix, which becomes 3N × 3N × N2, with N being the number of atoms in the molecule and N2 the number of IQA terms. Since there is no analytical method that produces the IQA second derivatives, the three-dimensional IQA Hessian is numerically calculated. When studying molecular vibrations, force constants, providing information about the nature of chemical bond and related to infrared frequencies, can be obtained by Wilson's FG method, which involves detailed manipulations of the Hessian matrix. In this paper, the methodology is reported and validated for a set of 30 molecules and more than 200 force constants and their interactions. Energetic origins of force constants are presented for diatomics and small molecules containing carbon-carbon, oxygen-oxygen, and carbon-oxygen bonds with different bond orders. It is found that bond stability and stiffness can have strikingly different energetic origins.

3.
J Chem Theory Comput ; 18(4): 2437-2447, 2022 Apr 12.
Article in English | MEDLINE | ID: mdl-35258284

ABSTRACT

A novel IRC-TS-CCTDP method to investigate transition states (TS) is proposed in which changes in the molecular geometry follow atomic displacements corresponding to the imaginary frequency normal coordinate. Electronic charge structure changes can be analyzed using the charge-charge-transfer-dipolar polarization (CCTDP) model. An application is presented for the gas-phase SN2 reaction transition state structures for nine NuCX3LG- systems, with Nu and LG = H, F, Cl and X = H, F. Using quantum theory of atoms in molecules (QTAIM) at the QCISD/aug-cc-pVTZ level, atomic charges and atomic dipoles were obtained and applied to calculate the CCTDP contributions to their imaginary normal mode intensities. The results show that the imaginary bands are exceptionally strong, ranging from 1217 to 16 086 km·mol-1, much higher than the stretching intensities found in the methyl halides (that are all less than 100 km·mol-1). For all systems, the CT contributions are responsible for 63% of the total dipole moment derivatives. The charge contributions are slightly higher for transition states where X = F. Dipolar polarization contributions are always small and only reflect the molecular orientation change when the nucleophile displaces the leaving group and, therefore, can be neglected. The same occurs for contributions from the X atoms. Only atoms aligned with the reaction axis Nu--C-LG contribute to the total intensity. Almost all of the infrared intensities are determined by electron transfers from the nucleophile to carbon and subsequently from carbon to the leaving group. The mechanism of charge transfer revealed by the CCTDP model is consistent with the well-accepted reaction mechanism. Open-access codes for performing the IRC-TS-CCTDP analysis are described and provided for potential users in the Supporting Information.

4.
Spectrochim Acta A Mol Biomol Spectrosc ; 271: 120891, 2022 Apr 15.
Article in English | MEDLINE | ID: mdl-35085995

ABSTRACT

Population analyses based on point charge approximations accurately estimating the equilibrium dipole moment will systematically fail when predicting infrared intensities of out-of-plane vibrations of planar molecules, whereas models based on both charges and dipoles will always succeed. It is not a matter of how the model is devised but rather how many degrees of freedom are available for the calculation. Population analyses based on point charges are very limited in terms of the amount of meaningful chemical information they provide, whereas models employing both atomic charges and atomic dipoles should be preferred for molecular distortions. A good model should be able to correctly describe not only static, equilibrium structures but also distorted geometries in order to correctly assess information from vibrating molecules. The limitations of point charge models also hold for distortions much larger than those encountered vibrationally.


Subject(s)
Electronics , Quantum Theory
5.
J Phys Chem A ; 125(39): 8615-8625, 2021 Oct 07.
Article in English | MEDLINE | ID: mdl-34549960

ABSTRACT

The reaction path for the formation of BX3-NH3 (X = H, F, Cl, Br) complexes was divided into two processes: (i) rehybridization of the acid while adopting a pyramidal geometry, and (ii) the complex formation from the pyramidal geometries of the acid and base. The interacting quantum atom (IQA) method was used to investigate the Lewis acidity trend of these compounds. This topological analysis suggests that the boron-halogen bond exhibits a considerable degree of ionicity. A relative energy gradient (REG) analysis on IQA energies indicates that the acid-base complex formation is highly dependent on electrostatic energy. With increasing halogen electronegativity, a higher degree of ionicity of the B-X is observed, causing an increase in the absolute value of X and B charges. This increases not only the attractive electrostatic energy between the acid and base but also enhances the repulsive energy. The latter is the main factor behind the acidity trend exhibited by trihalides. Changes in geometry are relevant only for complexes where BH3 acts as an acid, where lower steric hindrance facilitates the adoption of the pyramidal geometry observed in the complex. The CCTDP analysis shows that infrared intensities of BX3-NH3 are determined mostly by the atomic charges and not by the charge transfer or polarization. The opposite is observed in covalent analogues.

6.
J Chem Inf Model ; 61(8): 3881-3890, 2021 08 23.
Article in English | MEDLINE | ID: mdl-34324335

ABSTRACT

Generalized atomic polar tensor (GAPT) has turned into a very popular charge model since it was proposed three decades ago. During this period, several works aiming to compare different partition schemes have included it among their tested models. Nonetheless, GAPT exhibits a set of unique features that prevent it from being directly comparable to "standard" partition schemes. We take this opportunity to explore some of these features, mainly related to the need of evaluating multiple geometries and the dynamic character of GAPT, and show how to obtain the static and dynamic parts of GAPT from any static charge model in the literature. We also present a conceptual evaluation of charge models that aims to explain, at least partially, why GAPT and quantum theory of atoms in molecules (QTAIM) charges are strongly correlated with one another, even though they seem to be constructed under very different frameworks. Similar to GAPT, infrared charges (also derived from atomic polar tensors of planar molecules) are also shown to provide an improved interpretation if they are described as a combination of static charges and changing atomic dipoles rather than just experimental static atomic charges.


Subject(s)
Quantum Theory , Static Electricity
7.
J Phys Chem A ; 125(15): 3219-3229, 2021 Apr 22.
Article in English | MEDLINE | ID: mdl-33847496

ABSTRACT

We present a complete theoretical protocol to partition infrared intensities into terms owing to individual atoms by two different but related approaches: the atomic contributions (ACs) show how the entire molecular vibrational motion affects the electronic structure of a single atom and the total infrared intensity. On the other hand, the dynamic contributions (DCs) show how the displacement of a single atom alters the electronic structure of the entire molecule and the total intensity. The two analyses are complementary ways of partitioning the same total intensity and conserve most of the features of the total intensity itself. Combined, they are called the AC/DC analysis. These can be further partitioned following the CCTDP (or CCT) models according to the population analysis chosen by the researcher. The main conceptual features of the equations are highlighted, and representative numerical results are shown to support the interpretation of the equations. The results are invariant to rotation and translation and can readily be extended to molecules of any size, shape, or symmetry. Although the AC/DC analysis requires the choice of a charge model, all charge models that correctly reproduce the total molecular dipole moment can be used. A fully automated protocol managed by the Placzek program is made available, free of charge and with input examples.

8.
Spectrochim Acta A Mol Biomol Spectrosc ; 251: 119393, 2021 Apr 15.
Article in English | MEDLINE | ID: mdl-33450451

ABSTRACT

Out-of-plane CH group bending vibrational bands have long been known to be more intense than those for CF groups in similar molecular environments. This contrasts with expectations derived from charge models for which equilibrium atomic charge displacements are considered dominant contributions to dipole moment change on vibration. For this reason, the Charge, Charge Transfer, Dipolar Polarization (CCTDP) model based on the Quantum Theory for Atoms in Molecules (QTAIM) has been applied to the ethylene, tetrafluoroethylene and difluoro- and dichloroethylene molecules. Atomic charges and atomic dipoles from QTAIM and infrared intensities were calculated at the M06-2X/aug-cc-pVTZ level. The CH out-of-plane bending vibrations with relatively high intensities between 48.0 and 82.1 km/mol are characterized by small atomic charge and large polarization contributions having the same sign resulting in large net dipole moment contributions. Large charge and polarization dipole moment derivative contributions with opposite signs cancel each other producing very small intensities between 0.3 and 12.7 km/mol for the CF bends. Intensity variations can be successfully modeled by only their carbon atomic contributions with smaller contributions from the terminal atoms. Both CH and CF bending vibrations have large polarization contributions. Their charge contributions are usually small except for carbon atoms bonded to two fluorine atoms. The terminal atoms as well as the carbons have charge and polarization contributions of opposite sign. Comparison to benzene and hexafluorobenzene reveals that changes in these molecules' electronic densities caused by the out-of-plane atomic displacements are characteristic for each bond. In conclusion, successful modeling of the ethylene intensities must include atomic dipole parameters.Models based only on charges are doomed to failure.

9.
J Phys Chem A ; 124(17): 3407-3416, 2020 Apr 30.
Article in English | MEDLINE | ID: mdl-32250118

ABSTRACT

Atomic charges are invariant for out-of-plane distortions, making their molecular vibrations enticing for electronic structure studies. Of planar molecules, the boron trihalides contain some of the most polar bonds known to chemistry, although their out-of-plane bending intensities are very small contrary to expectations from atomic charge models. Here, the out-of-plane infrared intensities of the BX(2)X(3)X(4) (X(2), X(3), X(4) = H, F, Cl, Br) molecules are investigated using quantum theory of atoms in molecules atomic charges and atomic dipoles within the formulism of the charge, charge transfer, dipolar polarization model at the QCISD/aug-cc-pVTZ quantum level. Dipole moments induced by equilibrium charge displacement of atoms perpendicular to the molecular plane are almost completely cancelled by their electronic density polarizations. The calculated boron trihalide intensities are small for molecules with such polar bonds ranging from 0.6 to 106.1 km mol-1. Even though the Cl atomic charge of -0.72 e in BCl3 is more negative than the hydrogen values of -0.67 e in BH3, the hydride out-of-plane intensity of 82.0 km mol-1 is an order of magnitude larger than that of the trichloride, 6.3 km mol-1. Owing to their diverse electronic structures, transference of atomic charges and dipole parameters among the boron trihalides is extremely challenging and does not result in accurate intensity values. For this reason, a machine-learning decision-tree algorithm was used to perform the transference procedure. Decision trees were optimized using quantum-level intensity values. Atomic charge and dipole parameters were estimated for a set of 12 test set molecules. These parameters provided intensity estimates with a root-mean-square error of 2.1 km mol-1 compared with QCISD/aug-cc-pVTZ reference values.

10.
Spectrochim Acta A Mol Biomol Spectrosc ; 230: 118067, 2020 Apr 05.
Article in English | MEDLINE | ID: mdl-31958609

ABSTRACT

The largest source of experimental error in determining gas phase fundamental infrared intensities arises from the separation of overlapped bands. Quantum chemical calculations at the QCISD/cc-pVTZ and QCISD/aug-cc-pVTZ levels were carried out on four simple hydrocarbons and the fluoro- and chloromethanes with the aim of accurate overlapped band separation. Fundamental vibrational intensity results were compared with individual empirical intensity estimates reported for overlapped band systems. Root mean square differences of 3.7 km mol-1 are found between the experimental and QCISD/cc-pVTZ values for nine overlapped bands of the hydrocarbons and 11.8 km mol-1 for the QCISD/aug-cc-pVTZ values for 12 overlapped bands of the fluoro- and chloromethanes. These values correspond to 14% and 18% of the average hydrocarbon and halomethane intensity values. Previous experimental separation errors were estimated to be quite larger, between 20% and 50%. As quantum calculations are continuously being refined one can expect more accurate band separation results in the future.

11.
Talanta ; 209: 120591, 2020 Mar 01.
Article in English | MEDLINE | ID: mdl-31892095

ABSTRACT

Coffee is one of the most important commodities, showing sensitivity to environmental variations. The main effects and their interaction for two levels of atmospheric CO2 concentrations and two water regimes of a factorial design were investigated for the metabolic profiles of Coffea arabica raw beans using UV fingerprint analysis from a mixture design. UV fingerprint results obtained from pure ethanol and binary ethanol-dichloromethane mixtures showed the largest metabolic discriminations between CO2 levels and their extracts were investigated in detail. The biosynthesis of major metabolites, chlorogenic acids, cafestol, kahweol and caffeine were altered owing to environmental conditions. Higher amounts of chlorogenic acids and kahweol were observed in beans from unirrigated plants grown with enriched CO2 and irrigated ones at the current CO2 level. Water availability and CO2 concentration interaction affects the metabolite amounts. Besides a significant CO2 atmospheric effect water availability was a limiting factor for metabolite content only at current CO2 level, suggesting the successful metabolic coping of CO2 enriched Arabic coffee beans suffering future droughts.


Subject(s)
Carbon Dioxide/metabolism , Coffea/metabolism , Metabolome , Seeds/metabolism , Biosynthetic Pathways , Caffeine/analysis , Caffeine/metabolism , Chlorogenic Acid/analysis , Chlorogenic Acid/metabolism , Coffea/chemistry , Diterpenes/analysis , Diterpenes/metabolism , Droughts , Seeds/chemistry , Water/metabolism
12.
J Phys Chem A ; 123(30): 6482-6490, 2019 Aug 01.
Article in English | MEDLINE | ID: mdl-31276407

ABSTRACT

Infrared band intensification of the A-H bond stretching mode of A-H···B acid-base systems has long been known to be the most spectacular spectral change occurring on hydrogen bonding. A QTAIM/CCTDP model is reported here to quantitatively explain the electronic structure origins of intensification and investigate the correlation between experimental enthalpies of formation and infrared hydrogen bond stretching intensifications amply reported in the literature. Augmented correlation-consistent polarized triple-zeta quantum calculations at the MP2 level were performed on complexes with HF and HCl electron acceptors and HF, HCl, NH3, H2O, HCN, acetonitrile, formic acid, acetaldehyde, and formaldehyde electron donor molecules. The A-H stretching band intensities are calculated to be 3 to 40 times larger than their monomer values. Although the acidic hydrogen atomic charge is important for determining the intensities of HF complexes relative to HCl complexes with the same electron donor, they are not important for infrared intensifications occurring on hydrogen bond formation for a series of bases with a common acid. Charge transfers are found to be the most important factor resulting in the intensifications, but dipolar polarization effects are also significant for each series of complexes. A mechanism involving intra-acid and intermolecular electron transfers as well as atomic polarizations is proposed for understanding the intensifications. The calculated sums of the intermolecular electron transfer and acid dipolar polarization contributions to the dipole moment derivatives for each series of complexes are highly correlated with their enthalpies of formation and H-bond intensifications. This could be related to increasing electron transfer from base to acid that correlates with the calculated hydrogen bonding energies and may be a consequence of the A-H bond elongation on complex formation having amplitudes similar to those expected for the A-H vibration.

13.
Article in English | MEDLINE | ID: mdl-30743071

ABSTRACT

New experimental intensity results obtained by band integration from the PNNL (Pacific Northwest National Laboratory) spectral library are reported for 26 CH vibrations of methane, acetylene, ethylene, ethane, allene, propyne and cyclopropane. The PNNL intensity values range from 3.1 to 185.4 km mol-1 and are in excellent agreement, rms difference of 3.1 km mol-1, with earlier low resolution intensity results. QCISD/6-311++G(3d,3p) and QCISD/cc-pVTZ theoretical results are in good agreement with the PNNL intensity values with rms differences of 4.4 and 4.9 km mol-1, respectively. Charge-charge transfer-dipolar polarization model parameters at both quantum levels indicate that the charge transfer-dipolar polarization contributions to the intensities are much larger than those owing to the movements of static equilibrium charges on hydrogen for these vibrations except for the CH vibrations of acetylene that is known to contain very acidic hydrogen atoms. The main effect of the static charge movement comes from its interaction with charge transfer-dipolar polarization owing to the relatively large parameter values of this dynamic electronic contribution. The sum of the charge transfer-dipolar polarization parameters with their interaction with the charge accurately describes the variations in the intensity values of these hydrocarbon vibrations.

14.
Food Chem ; 273: 151-158, 2019 Feb 01.
Article in English | MEDLINE | ID: mdl-30292362

ABSTRACT

Statistical mixture design extraction and fractionation of Mikania plant samples were carried out to quantitatively study seasonal and solvent composition effects as well as their interactions on secondary metabolites. The mixture design consisted of ethanol, acetone, dichloromethane and chloroform solvents and their binary, ternary and quaternary mixtures. Yields were measured for the crude extract and its neutral, organic, basic, polar and fiber fractions obtained with each solvent composition from samples harvested during 2010. Two-way ANOVA found statistically significant seasonal and solvent effects for the crude extract and all the fractions except for the polar fraction solvent. The best solvent extractor depends the harvest season. High crude, organic and polar fraction yields in the summer are correlated with the coumarin UV-vis absorbance at 274 nm. Crude yields of mixtures containing ethanol are correlated with the coumarin absorbances in summer, winter and spring whereas mixtures without ethanol show no significant correlation.


Subject(s)
Mikania/chemistry , Plant Leaves/chemistry , Solvents/chemistry , Chemical Fractionation , Coumarins/analysis , Coumarins/chemistry , Functional Food , Mikania/metabolism , Plant Extracts/chemistry , Plant Leaves/metabolism , Seasons , Secondary Metabolism
15.
Talanta ; 191: 382-389, 2019 Jan 01.
Article in English | MEDLINE | ID: mdl-30262073

ABSTRACT

The first metabolic study of the impact of elevated CO2 (590 µL CO2 L-1) levels on the leaves and buds of Coffea arabica L. plants is reported. A novel sequential statistical mixture design strategy allowed optimization of both the extraction and mobile phase solvent systems to increase differences detected in metabolites of Coffea arabica L. plants and buds. Factor analysis showed that the 227 and 273 nm bands of the 1:1:1 ternary ethyl ether - dichloromethane - methanol mixture spectra resulted in discrimination of elevated CO2 extract samples from those obtained from leaves grown in a current level CO2 atmosphere (390 µL CO2 L-1) of leaf sample extracts. DAD-HPLC spectral peak evidence showed a 32% increase in absorbance of the 273 band for the enriched CO2 leaf extracts. This band has been assigned to caffeine-like substances and confirmed by the mass spectral signal at m/z 195 ([M + H]+). No enrichment band increases were found for kahweol, kaempferol and quercetin that had presence confirmed by mass spectral analysis. No epigenetic effect of this metabolic profile was found in new leaves after the addition of CO2 stopped. Enriched CO2 perturbation of the bud metabolite were much smaller than for the leaf samples. Absorbance increases in the 228 nm and decreases in the 235 nm bands play a prominent role in the discrimination of enriched CO2 buds from the controls in the pure dichloromethane extracting solvent. This global metabolome strategy allows the monitoring of chemical groups of plants susceptible to environmental changes as well as elucidate metabolic variations in complex matrices of biochemical responses.


Subject(s)
Carbon Dioxide/pharmacology , Coffea/drug effects , Coffea/metabolism , Plant Leaves/drug effects , Plant Leaves/metabolism , Plant Shoots/drug effects , Plant Shoots/metabolism , Dose-Response Relationship, Drug
16.
J Phys Chem A ; 122(51): 9833-9841, 2018 Dec 27.
Article in English | MEDLINE | ID: mdl-30495956

ABSTRACT

Infrared gas phase intensities are reported for the first time for 23 CH out-of-plane bending vibrations of eight substituted benzene molecules and naphthalene by integration of bands from the Pacific Northwest National Laboratory (PNNL) spectral library. These experimental values are found to have an rms difference of 8.7 km mol-1 with the B3LYP/6-311++G(d,p) values for intensities ranging from close to zero to 126.7 km mol-1. These intensities are found to have transferable electronic structure parameters, and their square roots are proportional to the amplitudes of the hydrogen atom displacements perpendicular to the benzene ring. Quantum Theory of Atom in Molecules (QTAIM)-Charge-Charge Transfer-Dipolar Polarization models were determined from the B3LYP/6-311++G(d,p) electronic densities. By far, the largest electronic contribution to these intensities is the dipolar polarization of the carbon atom of the displaced CH bond, 0.214 e. Smaller contributions are found for the polarizations of the displaced hydrogen atoms (-0.043 e) and nearest neighbor carbon atoms (-0.052 e), both having directions opposite to that of the carbon atom polarization of the displaced CH bond. The movements of static equilibrium hydrogen charges make the smallest contribution canceling most of the hydrogen polarization changes. In fact, the carbon atomic polarizations alone account for 96.9% of the dipole moment derivative vector norm for the CH out-of-plane bends. The polarization model is also found to be valid for seven CH out-of-plane bending vibrations of N-fused benzene ring molecules (N = 3, 4, 5).

17.
Spectrochim Acta A Mol Biomol Spectrosc ; 205: 269-275, 2018 Dec 05.
Article in English | MEDLINE | ID: mdl-30029189

ABSTRACT

New experimental values of the fundamental infrared gas phase intensities of the fluorochloromethanes have been determined by integrating the areas of vibrational bands contained in the PNNL spectral library using homemade software. The root mean square differences of these values and averages of experimental values determined at lower resolution during the latter part of the 20th century is 26.6 km mol-1. All but one of the low resolution intensities are smaller than the PNNL values. The exception is the ν1,ν4 overlapped band intensity of CF3Cl that has a standard deviation of the low resolution values of ±112.5 km mol-1, larger than the observed difference of 102.5 km mol-1. The use of an augmented triple zeta basis set at the QCISD level results in an rms difference of only 8.4 km mol-1 for the fluoro- and chloromethane PNNL intensities, whereas a comparison of these with results at the QCISD/cc-pVTZ level produces an error twice as large, 16.2 km mol-1. As such these results suggest that future comparisons of theoretical intensities with experimental values should take into account integrated intensities that can be obtained from hundreds of spectra in the PNNL library. Furthermore, the intensity values obtained from the PNNL spectra confirm electronegativity model results previously reported based on the low resolution intensities.

18.
J Mol Model ; 24(7): 182, 2018 Jun 29.
Article in English | MEDLINE | ID: mdl-29959583

ABSTRACT

The robustness of the QTAIM charge-charge transfer-dipolar polarization parameters for the CH, CF, and CCl stretching and bending distortions of the fluoro- and chloromethanes was determined comparing results calculated at three quantum levels, MP2/6-311G++(3d,3p), QCISD/cc-pVTZ, and QCISD/aug-cc-pVTZ. The correlation coefficients between the MP2/6-311G++G(d,p) and QCISD/cc-pVTZ results with those of QCISD/aug-cc-pVTZ intensities are excellent, 0.934 and 0.988, respectively, showing that the parameters converge with increasing quality of the quantum levels. In spite of numerical differences, the interpretation of the electronic structure changes occurring for these vibrations is the same for all three quantum levels. Accurate determination of charge transfer-counterpolarization effects is important for properly describing electron density changes for small molecular distortions.

19.
J Phys Chem A ; 121(42): 8115-8123, 2017 Oct 26.
Article in English | MEDLINE | ID: mdl-28968500

ABSTRACT

Fundamental infrared vibrational transition intensities of gas-phase molecules are sensitive probes of changes in electronic structure accompanying small molecular distortions. Models containing charge, charge transfer, and dipolar polarization effects are necessary for a successful classification of the C-H, C-F, and C-Cl stretching and bending intensities. C-H stretching and in-plane bending vibrations involving sp3 carbon atoms have small equilibrium charge contributions and are accurately modeled by the charge transfer-counterpolarization contribution and its interaction with equilibrium charge movement. Large C-F and C═O stretching intensities have dominant equilibrium charge movement contributions compared to their charge transfer-dipolar polarization ones and are accurately estimated by equilibrium charge and the interaction contribution. The C-F and C-Cl bending modes have charge and charge transfer-dipolar polarization contribution sums that are of similar size but opposite sign to their interaction values resulting in small intensities. Experimental in-plane C-H bends have small average intensities of 12.6 ± 10.4 km mol-1 owing to negligible charge contributions and charge transfer-counterpolarization cancellations, whereas their average out-of-plane experimental intensities are much larger, 65.7 ± 20.0 km mol-1, as charge transfer is zero and only dipolar polarization takes place. The C-F bending intensities have large charge contributions but very small intensities. Their average experimental out-of-plane intensity of 9.9 ± 12.6 km mol-1 arises from the cancellation of large charge contributions by dipolar polarization contributions. The experimental average in-plane C-F bending intensity, 5.8 ± 7.3 km mol-1, is also small owing to charge and charge transfer-counterpolarization sums being canceled by their interaction contributions. Models containing only atomic charges and their fluxes are incapable of describing electronic structure changes for simple molecular distortions that are of interest in classifying infrared intensities. One can expect dipolar polarization effects to also be important for larger distortions of chemical interest.

20.
J Chem Phys ; 146(13): 134107, 2017 Apr 07.
Article in English | MEDLINE | ID: mdl-28390371

ABSTRACT

The inclusion of atomic polarizations for describing molecular electronic structure changes on vibration is shown to be necessary for coherent infrared intensity modeling. Atomic charges from the ChelpG partition scheme and atomic charges and dipoles from Quantum Theory of Atoms in Molecules (QTAIM) were employed within two different models to describe the stretching and bending vibrational intensities of the C-H, C-F, and C=O groups. The model employing the QTAIM parameters was the Charge-Charge Transfer and Dipolar Polarization model (QTAIM/CCTDP), and the model employing the ChelpG charges was the Equilibrium Charge-Charge Flux (ChelpG/ECCF). The QTAIM/CCTDP models result in characteristic proportions of the charge-charge transfer-dipolar polarization contributions even though their sums giving the total intensities do not discriminate between these vibrations. According to the QTAIM/CCTDP model, the carbon monoxide intensity has electronic structure changes similar to those of the carbonyl stretches whereas they resemble those of the CH stretches for the ChelpG/ECCF model.

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