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1.
J Struct Biol ; 195(1): 93-9, 2016 07.
Article in English | MEDLINE | ID: mdl-27108186

ABSTRACT

In the past few years, 3D electron microscopy (3DEM) has undergone a revolution in instrumentation and methodology. One of the central players in this wide-reaching change is the continuous development of image processing software. Here we present Scipion, a software framework for integrating several 3DEM software packages through a workflow-based approach. Scipion allows the execution of reusable, standardized, traceable and reproducible image-processing protocols. These protocols incorporate tools from different programs while providing full interoperability among them. Scipion is an open-source project that can be downloaded from http://scipion.cnb.csic.es.


Subject(s)
Algorithms , Image Processing, Computer-Assisted/methods , Imaging, Three-Dimensional/instrumentation , Microscopy, Electron/methods , Imaging, Three-Dimensional/methods , Reproducibility of Results , Workflow
2.
Phys Rev Lett ; 96(18): 181801, 2006 May 12.
Article in English | MEDLINE | ID: mdl-16712358

ABSTRACT

We performed an improved search for nu(mu) --> nu(e) oscillation with the KEK to Kamioka (K2K) long-baseline neutrino oscillation experiment, using the full data sample of 9.2 x 10(19) protons on target. No evidence for a nu(e) appearance signal was found, and we set bounds on the nu(mu) --> nu(e) oscillation parameters. At Deltam(2)=2.8 x 10(-3) eV(2), the best-fit value of the K2Knu(mu) disappearance analysis, we set an upper limit of sin(2)2theta(mue) < 0.13 at a 90% confidence level.

3.
Phys Rev Lett ; 95(25): 252301, 2005 Dec 16.
Article in English | MEDLINE | ID: mdl-16384451

ABSTRACT

We report the result from a search for charged-current coherent pion production induced by muon neutrinos with a mean energy of 1.3 GeV. The data are collected with a fully active scintillator detector in the K2K long-baseline neutrino oscillation experiment. No evidence for coherent pion production is observed, and an upper limit of is set on the cross section ratio of coherent pion production to the total charged-current interaction at 90% confidence level. This is the first experimental limit for coherent charged pion production in the energy region of a few GeV.

4.
Phys Rev Lett ; 94(8): 081802, 2005 Mar 04.
Article in English | MEDLINE | ID: mdl-15783876

ABSTRACT

We present results for nu(mu) oscillation in the KEK to Kamioka (K2K) long-baseline neutrino oscillation experiment. K2K uses an accelerator-produced nu(mu) beam with a mean energy of 1.3 GeV directed at the Super-Kamiokande detector. We observed the energy-dependent disappearance of nu(mu), which we presume have oscillated to nu(tau). The probability that we would observe these results if there is no neutrino oscillation is 0.0050% (4.0 sigma).

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