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1.
BMJ Open ; 14(9): e084368, 2024 Sep 12.
Article in English | MEDLINE | ID: mdl-39266309

ABSTRACT

INTRODUCTION: The systemic inflammatory response syndrome during the perioperative period of cardiac surgery can lead to serious postoperative complications and significantly increase the hospital mortality rate. Colchicine, a widely used traditional anti-inflammatory drug, has good clinical value in cardiovascular anti-inflammatory therapy. Our preliminary single-centre study had confirmed the protective value of colchicine in patients undergoing cardiac surgery with cardiopulmonary bypass. For this multicentre investigation, we aim to further validate the anti-inflammatory and organ-protective effects of low-dose colchicine during the perioperative period in a low-risk population. METHODS AND ANALYSIS: This study is a multicentre, randomised, double-blind, placebo-controlled clinical trial. A total of 768 patients undergoing elective cardiac surgery will be enrolled from eight heart centres in China. The participants will be randomly assigned to two groups: the colchicine group will receive low-dose colchicine (0.5 mg once-a-day dosing regimen (QD) orally for 3 days before the surgery and 0.5 mg dosing frequency of every other day (QOD) continuously for 10 days after the surgery), whereas the placebo group will be given starch tablets for the same time and dosage. Primary endpoints are the occurrence of postoperative inflammatory diseases, including postoperative atrial fibrillation, acute respiratory distress syndrome, preoperative myocardial injury and post-pericardiotomy syndrome. Secondary endpoints included laboratory tests on postoperative days 1, 3, 5, 7 and 10, intensive care unit data, APACHE II score, Murray lung injury score, medication-related gastrointestinal reactions, 30-day and 90-day all-cause mortality, surgical data, chest radiograph on postoperative days 1, 2 and 3, and chest CT within 14 days after surgery. ETHICS AND DISSEMINATION: This research has received approval from the Medical Ethics Committee of Affiliated Nanjing Drum Tower Hospital, Nanjing University Medical College (approval number 2023-366-01). The study findings will be made available by publishing them in an open access journal. TRIAL REGISTRATION NUMBER: ClinicalTrials.gov (NCT06118034).


Subject(s)
Anti-Inflammatory Agents , Cardiac Surgical Procedures , Colchicine , Postoperative Complications , Humans , Colchicine/administration & dosage , Colchicine/therapeutic use , Double-Blind Method , Cardiac Surgical Procedures/adverse effects , Anti-Inflammatory Agents/administration & dosage , Anti-Inflammatory Agents/therapeutic use , Postoperative Complications/prevention & control , Perioperative Period , Systemic Inflammatory Response Syndrome/prevention & control , Systemic Inflammatory Response Syndrome/drug therapy , Systemic Inflammatory Response Syndrome/etiology , Randomized Controlled Trials as Topic , Multicenter Studies as Topic , Male , China , Adult , Middle Aged , Female
2.
Int J Biol Macromol ; 277(Pt 4): 134452, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39102906

ABSTRACT

Although introducing Enteromorpha prolifera sulfated polysaccharide (SPEP) enhances the mechanical properties of hydrogels significantly, little is known about the effects of polysaccharide and ion addition on morphological and physicochemical properties of conductive hydrogel. Therefore, the Poly (acrylic acid)/SPEPn/Al3+m (PAA/SPEPn/Al3+m) hydrogels with different SPEP and Al3+ addition were synthesized by simple one-pot method. The porosity, tensile strength, and swelling ration increased, while compressive strength, elongation at break, self-healing, self-adhesion properties increased first and then decreased as SPEP addition increased from 0 % to 3.80 %. The Al3+ addition increased from 0.08 % to 0.30 %, both tensile and compressive strength increased first and then decreased, while elongation at break kept increasing. Unexpectedly, both increasing SPEP and Al3+ addition reduced the electrical conductivity, while SPEP increased the gauge factor of hydrogel. The hydrogel exhibited optimal comprehensive properties when SPEP and Al3+ addition were 2.31 % and 0.24 %, respectively. The PAA/SPEP2.31%/Al3+0.24% hydrogel showed high tensile strength (107.60 kPa), elongation at break (2426.67 %), strain self-healing rate (81.87 %), adhesion strength (21.61 kPa), and conductivity (3.60 S/m). Overall, the properties of PAA/SPEPn/Al3+m hydrogels can be regulated through tailoring SPEP and Al3+ addition, which can be used as on-demand strategy to improve the performance of PAA/SPEPn/Al3+m hydrogels for each application.


Subject(s)
Aluminum , Electric Conductivity , Hydrogels , Polysaccharides , Tensile Strength , Hydrogels/chemistry , Polysaccharides/chemistry , Aluminum/chemistry , Wearable Electronic Devices , Sulfates/chemistry , Ulva/chemistry , Compressive Strength , Porosity , Acrylic Resins/chemistry , Edible Seaweeds
3.
Cell Mol Biol (Noisy-le-grand) ; 69(13): 78-82, 2023 Dec 10.
Article in English | MEDLINE | ID: mdl-38158685

ABSTRACT

Acute myelitis (AM) mainly presents with paralysis, and sensory and autonomic dysfunction, which affects the daily life and quality of life (QoL) of patients. Reasonable selection of treatment and nursing can promote the recovery of patients. It was to explore the effect of oral nanoliposomes combined with home care on the rehabilitation of patients. A total of 100 AM patients who received surgical treatment were enrolled. According to the treatment and nursing methods, they were grouped into a control (oral administration of nanoliposomes plus routine nursing, n=50) and an observation group (oral administration of nanoliposomes plus home care, n=50). Differences between patients' neurological recovery, lower limb muscle strength, activities of daily living, QoL, and satisfaction with quality of care were assessed. As against control, the time of muscle strength to level 2, urination recovery time, walking time, and sensory recovery time was shorter, and the degree of lower limb muscle strength recovery was higher, the Barthel and Newcastle Satisfaction with Nursing Scale (NSNS) scores of daily living ability increased, and the QoL EuroQol-5 dimensions (EQ-5D) score decreased in the observation group (P<0.05). Oral administration of nanoliposome plus home care can promote the recovery of lower limb muscle strength, improve daily living ability and QoL, and improve nursing satisfaction in patients with AM surgery.


Subject(s)
Home Care Services , Quality of Life , Humans , Activities of Daily Living , Walking , Postoperative Care
4.
Int J Biol Macromol ; 253(Pt 4): 126847, 2023 Dec 31.
Article in English | MEDLINE | ID: mdl-37709219

ABSTRACT

The synthesis of multifunctional conductive hydrogel has attracted extensive attention worldwide due to their integrated properties of stretchability, self-adhesion, self-healing, and high sensitivity, while it is still a challenge. Although various kinds of polysaccharides and their derivatives are used to achieve the aforementioned objective, there are few researches about hydrogel design introducing sulfated polysaccharide from Enteromorpha prolifera (SPE), which is rich in hydroxyl, sulfate, and carboxyl groups providing amounts of reaction sites for hydrogel synthesis. Herein, conductive hydrogel (PAA-Al3+-SPE3) reinforced by SPE was designed by simple one pot hot polymerization method. This hydrogel demonstrated charming extension ratio (up to 4027.40 %), strain stress (up to 59.94 kPa), compressive strength (19.71 Mpa), and high conductivity sensibility (GF 6.76, 300 % - 700 %). Additionally, PAA-Al3+-SPE3 showed good self-healing property (repaired autonomously after 60 s) and satisfied self-adhesion (31.11 kPa) due to the reversible hydrogen bonds and metal coordination interactions. Furthermore, the PAA-Al3+-SPE3 hydrogel showed great real-time sensing performance to monitor various motions. These findings suggest the potential of PAA-Al3+-SPE3 hydrogel as an affordable and reliable conductive sensing material. Meantime, the first utilization of SPE to construct flexible wearable sensors offers new route for the high-value application of Enteromorpha prolifera.


Subject(s)
Hydrogels , Prunella , Humans , Sulfates , Motion , Electric Conductivity , Polysaccharides
5.
Front Cardiovasc Med ; 10: 1097116, 2023.
Article in English | MEDLINE | ID: mdl-36860275

ABSTRACT

Background: To establish models for predicting descending thoracic aortic diameters and provide evidence for selecting the size of the stent graft for TBAD patients. Methods: A total of 200 candidates without severe deformation of aorta were included. CTA information was collected and 3D reconstructed. In the reconstructed CTA, a total of 12 cross-sections of peripheral vessels were made perpendicular to the axis of flow of the aorta. Parameters of the cross sections and basic clinical characteristics were used for prediction. The data was randomly split into the training set and the test set in an 8:2 ratio. To fully describe diameters of descending thoracic aorta, three predicted points were set based quadrisection, and a total of 12 models at three predicted points were established using four algorithms included linear regression (LR), support vector machine (SVM), Extra-Tree regression (ETR) and random forest regression (RFR). The performance of models was evaluated by mean square error (MSE) of the prediction value, and the ranking of feature importance was given by Shapley value. After modeling, prognosis of five TEVAR cases and stent oversizing were compared. Results: We identified a series of parameters which affect the diameter of descending thoracic aorta, including age, hypertension, the area of proximal edge of superior mesenteric artery, etc. Among four predictive models, all the MSEs of SVM models at three different predicted position were less than 2 mm2, with approximately 90% predicted diameters error less than 2 mm in the test sets. In patients with dSINE, stent oversizing was about 3 mm, while only 1 mm in patients without complications. Conclusion: The predictive models established by machine learning revealed the relationship between basic characteristics and diameters of different segment of descending aorta, which help to provide evidence for selecting the matching distal size of the stent for TBAD patients, thereby reducing the incidence of TEVAR complications.

6.
Mol Biol Evol ; 39(5)2022 05 03.
Article in English | MEDLINE | ID: mdl-35485492

ABSTRACT

The antibiotic resistance crisis continues to threaten human health. Better predictions of the evolution of antibiotic resistance genes could contribute to the design of more sustainable treatment strategies. However, comprehensive prediction of antibiotic resistance gene evolution via laboratory approaches remains challenging. By combining site-specific integration and high-throughput sequencing, we quantified relative growth under the respective selection of cefotaxime or ceftazidime selection in ∼23,000 Escherichia coli MG1655 strains that each carried a unique, single-copy variant of the extended-spectrum ß-lactamase gene blaCTX-M-14 at the chromosomal att HK022 site. Significant synergistic pleiotropy was observed within four subgenic regions, suggesting key regions for the evolution of resistance to both antibiotics. Moreover, we propose PEARP and PEARR, two deep-learning models with strong clinical correlations, for the prospective and retrospective prediction of blaCTX-M-14 evolution, respectively. Single to quintuple mutations of blaCTX-M-14 predicted to confer resistance by PEARP were significantly enriched among the clinical isolates harboring blaCTX-M-14 variants, and the PEARR scores matched the minimal inhibitory concentrations obtained for the 31 intermediates in all hypothetical trajectories. Altogether, we conclude that the measurement of local fitness landscape enables prediction of the evolutionary trajectories of antibiotic resistance genes, which could be useful for a broad range of clinical applications, from resistance prediction to designing novel treatment strategies.


Subject(s)
Escherichia coli Infections , beta-Lactamases , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Drug Resistance, Microbial , Escherichia coli/genetics , Escherichia coli Infections/drug therapy , Humans , Prospective Studies , Retrospective Studies , beta-Lactamases/genetics
7.
Nat Ecol Evol ; 6(1): 103-115, 2022 01.
Article in English | MEDLINE | ID: mdl-34795386

ABSTRACT

The phenotypic consequence of a genetic mutation depends on many factors including the expression level of a gene. However, a comprehensive quantification of this expression effect is still lacking, as is a further general mechanistic understanding of the effect. Here, we measured the fitness effect of almost all (>97.5%) single-nucleotide mutations in GFP, an exogenous gene with no physiological function, and URA3, a conditionally essential gene. Both genes were driven by two promoters whose expression levels differed by around tenfold. The resulting fitness landscapes revealed that the fitness effects of at least 42% of all single-nucleotide mutations within the genes were expression dependent. Although only a small fraction of variation in fitness effects among different mutations can be explained by biophysical properties of the protein and messenger RNA of the gene, our analyses revealed that the avoidance of stochastic molecular errors generally underlies the expression dependency of mutational effects and suggested protein misfolding as the most important type of molecular error among those examined. Our results therefore directly explained the slower evolution of highly expressed genes and highlighted cytotoxicity due to stochastic molecular errors as a non-negligible component for understanding the phenotypic consequence of mutations.


Subject(s)
Genetic Fitness , Proteins , Mutation
8.
Mol Biol Evol ; 38(8): 3294-3307, 2021 07 29.
Article in English | MEDLINE | ID: mdl-33871622

ABSTRACT

The activity of a gene newly integrated into a chromosome depends on the genomic context of the integration site. This "position effect" has been widely reported, although the other side of the coin, that is, how integration affects the local chromosomal environment, has remained largely unexplored, as have the mechanism and phenotypic consequences of this "externality" of the position effect. Here, we examined the transcriptome profiles of approximately 250 Saccharomyces cerevisiae strains, each with GFP integrated into a different locus of the wild-type strain. We found that in genomic regions enriched in essential genes, GFP expression tended to be lower, and the genes near the integration site tended to show greater expression reduction. Further joint analysis with public genome-wide histone modification profiles indicated that this effect was associated with H3K4me2. More importantly, we found that changes in the expression of neighboring genes, but not GFP expression, significantly altered the cellular growth rate. As a result, genomic loci that showed high GFP expression immediately after integration were associated with growth disadvantages caused by elevated expression of neighboring genes, ultimately leading to a low total yield of GFP in the long run. Our results were consistent with competition for transcriptional resources among neighboring genes and revealed a previously unappreciated facet of position effects. This study highlights the impact of position effects on the fate of exogenous gene integration and has significant implications for biological engineering and the pathology of viral integration into the host genome.


Subject(s)
Chromosomal Position Effects , Mutagenesis, Insertional , Transcriptome , Genetic Fitness , Histone Code , Saccharomyces cerevisiae
9.
Stem Cell Res ; 35: 101375, 2019 03.
Article in English | MEDLINE | ID: mdl-30797990

ABSTRACT

Human iPSC line, iPSC-ADM01(SYSUi001-A), was generated from a 70-year-old male patient with sporadic Alzheimer's disease, using non-integrative reprogramming method. This cell line shows pluripotency both in vitro and in vivo, and has a normal karyotype.


Subject(s)
Alzheimer Disease , Cellular Reprogramming Techniques , Cellular Reprogramming , Induced Pluripotent Stem Cells , Karyotype , Aged , Alzheimer Disease/metabolism , Alzheimer Disease/pathology , Cell Line , Humans , Induced Pluripotent Stem Cells/metabolism , Induced Pluripotent Stem Cells/pathology , Male
10.
Stem Cell Res Ther ; 8(1): 196, 2017 09 19.
Article in English | MEDLINE | ID: mdl-28927462

ABSTRACT

BACKGROUND: Human induced pluripotent stem cells (iPSCs) have been verified as a powerful cell model for the study of pathogenesis in hereditary disease. Autosomal dominant polycystic kidney disease (ADPKD) is caused by mutations of PKD or non-PKD genes. The pathogenesis of ADPKD remains unexplored because of the lack of a true human cell model. METHODS: Six ADPKD patients and four healthy individuals were recruited as donors of somatic cells from a Chinese ADPKD family without mutations of the PKD genes but carrying SAMSN1 gene deletion. The ADPKD-iPSCs were generated from somatic cells and were induced into kidney-like cells (KLCs) by a novel three-step method involving cytokines and renal epithelium growth medium. Furthermore, we analyzed functional properties of these KLCs by water transportation and albumin absorption assays. RESULTS: We successfully generated iPSCs from ADPKD patients and differentiated them into KLCs that showed morphological and functional characteristics of human kidney cells. Further, we also found that ADPKD-iPSC-KLCs had a significantly higher rate of apoptosis and a significantly lower capacity for water transportation and albumin absorption compared to healthy sibling-derived differentiated KLCs. Furthermore, knockdown of SAMSN1 in control iPSCs may attenuate differentiation and/or function of KLCs. CONCLUSIONS: These data show that we have created the first iPSCs established from ADPKD patients without mutations in the PKD genes, and suggest that the deletion mutation of SAMSN1 might be involved in the differentiation and/or function of KLCs. ADPKD-iPSC-KLCs can be used as a versatile model system for the study of kidney disease.


Subject(s)
Adaptor Proteins, Vesicular Transport/genetics , Epithelial Cells/metabolism , Induced Pluripotent Stem Cells/metabolism , Kidney/metabolism , Nerve Tissue Proteins/genetics , Polycystic Kidney, Autosomal Dominant/genetics , Receptors, Cell Surface/genetics , TRPP Cation Channels/genetics , Adaptor Proteins, Vesicular Transport/deficiency , Adolescent , Albumins/metabolism , Biological Transport , Cell Differentiation , Comparative Genomic Hybridization , DNA Mutational Analysis , Epithelial Cells/pathology , Female , Gene Deletion , Gene Expression , Humans , Induced Pluripotent Stem Cells/pathology , Kidney/pathology , Male , Middle Aged , Nerve Tissue Proteins/deficiency , Pedigree , Polycystic Kidney, Autosomal Dominant/metabolism , Polycystic Kidney, Autosomal Dominant/pathology , Primary Cell Culture , Receptors, Cell Surface/deficiency , TRPP Cation Channels/metabolism , Water/metabolism
11.
Stem Cell Res ; 18: 64-66, 2017 01.
Article in English | MEDLINE | ID: mdl-28395808

ABSTRACT

Urine resource cells were collected from a 59-year-old female patient with multiple endocrine neoplasia type 1 syndrome (MEN1) for generating iPS cells with episomal plasmids carrying Oct4, Sox2, Klf4 and miR-302-367. The patient sustained a heterozygous G>T transition mutation on the exon 9 of Men1 gene that was confirmed by sequencing analysis on the obtained iPSC lines. Karyotyping indicated the chromosomes with normal appearances and numbers. Their pluripotency was demonstrated by gene expression, as well as their abilities for differentiating into three germ layers. This cell line provides an ideal model for studying MEN1.


Subject(s)
Cellular Reprogramming , Induced Pluripotent Stem Cells/cytology , Multiple Endocrine Neoplasia Type 1/pathology , Proto-Oncogene Proteins/genetics , Base Sequence , Cell Culture Techniques/methods , Cell Differentiation , Cell Line , DNA Mutational Analysis , Embryoid Bodies/metabolism , Embryoid Bodies/pathology , Exons , Female , Heterozygote , Humans , Induced Pluripotent Stem Cells/metabolism , Induced Pluripotent Stem Cells/transplantation , Karyotype , Kruppel-Like Factor 4 , Middle Aged , Multiple Endocrine Neoplasia Type 1/genetics , Multiple Endocrine Neoplasia Type 1/metabolism , Polymorphism, Single Nucleotide , Transcription Factors/genetics , Transcription Factors/metabolism , Urine/cytology
12.
Stem Cell Res ; 18: 70-72, 2017 01.
Article in English | MEDLINE | ID: mdl-28395810

ABSTRACT

Urine resource cells were collected from a 23-year-old male with multiple endocrine neoplasia type 1 syndrome (MEN1) for generating iPS cells with episomal plasmids. Two stable iPSC lines with free of episomal plasmid were established. The patient has a heterozygous G>T mutation on the exon 9 of Men1 gene that was confirmed by sequencing analysis on all resulted cell lines. Karyotyping indicated the chromosomes with normal appearances and numbers. Their pluripotency was demonstrated by gene expression and their abilities for differentiating into three germ layers. These iPSC lines provide valuable in vitro resources for pathological study on MEN1 syndrome.


Subject(s)
Induced Pluripotent Stem Cells/cytology , Multiple Endocrine Neoplasia Type 1/pathology , Proto-Oncogene Proteins/genetics , Cell Differentiation , Cell Line , Embryoid Bodies/metabolism , Embryoid Bodies/pathology , Exons , Heterozygote , Humans , Induced Pluripotent Stem Cells/metabolism , Karyotype , Male , Microscopy, Fluorescence , Multiple Endocrine Neoplasia Type 1/genetics , Multiple Endocrine Neoplasia Type 1/metabolism , Plasmids/genetics , Plasmids/metabolism , Point Mutation , Transcription Factors/genetics , Transcription Factors/metabolism , Urine/cytology , Young Adult
13.
Stem Cell Reports ; 6(5): 717-728, 2016 05 10.
Article in English | MEDLINE | ID: mdl-27132887

ABSTRACT

Generation of induced pluripotent stem cells (iPSCs) from human urine-derived cells (hUCs) provides a convenient and non-invasive way to obtain patient-specific iPSCs. However, many isolated hUCs exhibit very poor proliferation and are difficult to reprogram. In this study, we optimized reprogramming approaches for hUCs with very poor proliferation. We report here that a compound cocktail containing cyclic pifithrin-a (a P53 inhibitor), A-83-01, CHIR99021, thiazovivin, NaB, and PD0325901 significantly improves the reprogramming efficiency (170-fold more) for hUCs. In addition, we showed that replacement of Matrigel with autologous hUC feeders can overcome the reprogramming failure due to the massive cell death that occurs during delivery of reprogramming factors. In summary, we describe improved approaches to enable iPSC generation from hUCs that were otherwise difficult to reprogram, a valuable asset for banking patient-specific iPSCs.


Subject(s)
Cell Differentiation/drug effects , Cell Proliferation/drug effects , Cellular Reprogramming/drug effects , Induced Pluripotent Stem Cells/drug effects , Benzamides/pharmacology , Benzothiazoles/pharmacology , Diphenylamine/analogs & derivatives , Diphenylamine/pharmacology , Humans , Induced Pluripotent Stem Cells/cytology , Pyrazoles/pharmacology , Pyridines/pharmacology , Pyrimidines/pharmacology , Thiazoles/pharmacology , Thiosemicarbazones/pharmacology , Toluene/analogs & derivatives , Toluene/pharmacology , Urine/cytology
14.
Biomaterials ; 87: 1-17, 2016 May.
Article in English | MEDLINE | ID: mdl-26897536

ABSTRACT

Human pluripotent stem cells (hPSCs) possess great value in the aspect of cellular therapies due to its self-renewal and potential to differentiate into all somatic cell types. A few defined synthetic surfaces such as polymers and adhesive biological materials conjugated substrata were established for the self-renewal of hPSCs. However, none of them was effective in the generation of human induced pluripotent stem cells (hiPSCs) and long-term maintenance of multiple hPSCs, and most of them required complicated manufacturing processes. Polydopamine has good biocompatibility, is able to form a stable film on nearly all solid substrates surface, and can immobilize adhesive biomolecules. In this manuscript, a polydopamine-mediated surface was developed, which not only supported the reprogramming of human somatic cells into hiPSCs under defined conditions, but also sustained the growth of hiPSCs on diverse substrates. Moreover, the proliferation and pluripotency of hPSCs cultured on the surface were comparable to Matrigel for more than 20 passages. Besides, hPSCs were able to differentiate to cardiomyocytes and neural cells on the surface. This polydopamine-based synthetic surface represents a chemically-defined surface extensively applicable both for fundamental research and cell therapies of hPSCs.


Subject(s)
Biocompatible Materials/chemistry , Cellular Reprogramming , Indoles/chemistry , Induced Pluripotent Stem Cells/cytology , Polymers/chemistry , Cell Adhesion , Cell Culture Techniques , Cell Line , Cell Proliferation , Chitosan/analogs & derivatives , Human Embryonic Stem Cells/cytology , Humans , Immobilized Proteins/chemistry , Peptides/chemistry , Surface Properties , Vitronectin/chemistry
15.
Stem Cell Reports ; 5(6): 963-970, 2015 Dec 08.
Article in English | MEDLINE | ID: mdl-26626181

ABSTRACT

Fibrodysplasia ossificans progressiva (FOP) is a rare disease characterized by progressive ossification of soft tissues, for which there is no effective treatment. Mutations in the bone morphogenetic protein (BMP) type I receptor activin receptor-like kinase 2 (ACVR1/ALK2) are the main cause of FOP. We generated human induced pluripotent stem cells (hiPSCs) from FOP patients with the ALK2 R206H mutation. The mutant ALK2 gene changed differentiation efficiencies of hiPSCs into FOP bone-forming progenitors: endothelial cells (ECs) and pericytes. ECs from FOP hiPSCs showed reduced expression of vascular endothelial growth factor receptor 2 and could transform into mesenchymal cells through endothelial-mesenchymal transition. Increased mineralization of pericytes from FOP hiPSCs could be partly inhibited by the ALK2 kinase inhibitor LDN-212854. Thus, differentiated FOP hiPSCs recapitulate some aspects of the disease phenotype in vitro, and they could be instrumental in further elucidating underlying mechanisms of FOP and development of therapeutic drug candidates.


Subject(s)
Activin Receptors, Type I/genetics , Induced Pluripotent Stem Cells/pathology , Myositis Ossificans/genetics , Myositis Ossificans/pathology , Bone Morphogenetic Proteins/metabolism , Calcification, Physiologic , Cell Differentiation , Cells, Cultured , Humans , Induced Pluripotent Stem Cells/cytology , Induced Pluripotent Stem Cells/metabolism , Myositis Ossificans/metabolism , Myositis Ossificans/physiopathology , Osteogenesis , Pericytes/cytology , Pericytes/metabolism , Pericytes/pathology , Point Mutation , Signal Transduction
16.
Gastroenterology ; 149(4): 1068-81.e5, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26099525

ABSTRACT

BACKGROUND & AIMS: Levels of atonal homolog 8 (ATOH8) are reduced in 48% of hepatitis B virus-associated hepatocellular carcinoma cells (HCCs). ATOH8 downregulation is associated with loss of tumor differentiation, indicating an effect mediated by cancer stem cells. We investigated the effects of loss of ATOH8 in human hepatocellular carcinoma (HCC) cells and cell lines. METHODS: HCC and adjacent nontumor tissues were collected, from 2001 through 2012, from 242 patients undergoing hepatectomy at Sun Yat-Sen University Cancer Center in China; 83% of HCCs were associated with hepatitis B virus (HBV) infection. CD133(+) cells were isolated from tumor tissues by flow cytometry. Experiments were performed in HBV-positive and HBV-negative HCC cell lines, the immortalized liver cell line LO2, and 8 other HCC cell lines. ATOH8 was expressed from lentiviral vectors in PLC8024 and Huh7 cells; levels were knocked down with small interfering RNAs in QSG7701 cells. Cells carrying empty vectors were used as controls. Gene regulation by ATOH8 was assessed in mobility shift and luciferase reporter assays. Cells were analyzed in proliferation, foci formation, and colony formation assays. The tumorigenic and chemo-resistant potential of cells were investigated by assessing growth of xenograft tumors in immunocompromised mice. Metastatic features of cells were assessed in Matrigel invasion assays and wound healing analyses. RESULTS: Levels of ATOH8 mRNA were reduced by more than 4-fold, compared to nontumor tissues, in 118 of 242 HCC samples (48.8%). Patients with tumor reductions in ATOH8 had significantly shorter times of disease-free survival (mean, 41.4 months) than patients with normal tissue levels (mean, 52.6 months). ATOH8 expression was reduced in HepG2, Huh7, PLC8024 and CRL8064 HCC cells, as well as CD133(+) cells isolated from human HCC samples. Transgenic expression of ATOH8 in HCC cell lines significantly reduced proliferation and foci colony formation, as well as their invasive and migratory abilities. Transgenic expression of ATOH8 reduced the ability of HBV-positive PLC8024 cells to form tumors in mice, compared to control cells. Cells with ATOH8 knockdown formed xenograft tumors more rapidly, in more mice, than control cells. ATOH8 repressed transcription of stem-cell associated genes including OCT4, NANOG, and CD133. Knockdown of ATOH8 in CD133-negative QSG7701 cells caused them to express CD133; acquire self-renewal, differentiation, chemo-resistance properties; form more xenograft tumors in mice; and generate induced pluripotent stem cells (based on staining for alkaline phosphatase and their ability to form embryoid bodies and teratomas). Alternatively, expression of ATOH8 in PLC8024 and Huh7 cells significantly reduced the numbers of cells expressing CD133, and increased the chemo-sensitivity of Huh7 cells to 5-fluorouracil (5-FU) and cisplatin, in vitro and in mice. CONCLUSIONS: ATOH8 appears to be a tumor suppressor that induces stem-cell features and chemoresistance in HCC cells. Strategies to restore its levels and activities might be developed to treat patients with liver cancer.


Subject(s)
Basic Helix-Loop-Helix Transcription Factors/metabolism , Carcinoma, Hepatocellular/metabolism , Cell Dedifferentiation , Liver Neoplasms/metabolism , Neoplastic Stem Cells/metabolism , Tumor Suppressor Proteins/metabolism , AC133 Antigen , Animals , Antigens, CD/metabolism , Antineoplastic Agents/pharmacology , Basic Helix-Loop-Helix Transcription Factors/genetics , Carcinoma, Hepatocellular/drug therapy , Carcinoma, Hepatocellular/genetics , Carcinoma, Hepatocellular/pathology , Cell Movement , Cell Proliferation , Cell Survival , Disease-Free Survival , Dose-Response Relationship, Drug , Down-Regulation , Drug Resistance, Neoplasm , Gene Expression Regulation, Neoplastic , Glycoproteins/metabolism , Hep G2 Cells , Humans , Induced Pluripotent Stem Cells/metabolism , Kaplan-Meier Estimate , Liver Neoplasms/drug therapy , Liver Neoplasms/genetics , Liver Neoplasms/pathology , Male , Mice, SCID , Neoplasm Invasiveness , Neoplastic Stem Cells/drug effects , Neoplastic Stem Cells/pathology , Peptides/metabolism , RNA Interference , RNA, Messenger/metabolism , RNAi Therapeutics , Signal Transduction , Time Factors , Transcription, Genetic , Transfection , Tumor Suppressor Proteins/genetics , Xenograft Model Antitumor Assays
17.
J Biol Chem ; 290(19): 12079-89, 2015 May 08.
Article in English | MEDLINE | ID: mdl-25795783

ABSTRACT

The generation of personalized induced pluripotent stem cells (iPSCs) followed by targeted genome editing provides an opportunity for developing customized effective cellular therapies for genetic disorders. However, it is critical to ascertain whether edited iPSCs harbor unfavorable genomic variations before their clinical application. To examine the mutation status of the edited iPSC genome and trace the origin of possible mutations at different steps, we have generated virus-free iPSCs from amniotic cells carrying homozygous point mutations in ß-hemoglobin gene (HBB) that cause severe ß-thalassemia (ß-Thal), corrected the mutations in both HBB alleles by zinc finger nuclease-aided gene targeting, and obtained the final HBB gene-corrected iPSCs by excising the exogenous drug resistance gene with Cre recombinase. Through comparative genomic hybridization and whole-exome sequencing, we uncovered seven copy number variations, five small insertions/deletions, and 64 single nucleotide variations (SNVs) in ß-Thal iPSCs before the gene targeting step and found a single small copy number variation, 19 insertions/deletions, and 340 single nucleotide variations in the final gene-corrected ß-Thal iPSCs. Our data revealed that substantial but different genomic variations occurred at factor-induced somatic cell reprogramming and zinc finger nuclease-aided gene targeting steps, suggesting that stringent genomic monitoring and selection are needed both at the time of iPSC derivation and after gene targeting.


Subject(s)
Cellular Reprogramming , Endonucleases/metabolism , Endoribonucleases/metabolism , Gene Targeting , Genomic Instability , Induced Pluripotent Stem Cells/cytology , Alleles , Animals , Cell Differentiation , Chromosomes/ultrastructure , Comparative Genomic Hybridization , DNA Copy Number Variations , Erythroblasts/cytology , Exome , Gene Deletion , Genetic Variation , Humans , Mice , Mutation , Oligonucleotide Array Sequence Analysis , Zinc Fingers/genetics , beta-Globins/genetics , beta-Thalassemia/genetics
18.
FASEB J ; 28(11): 4642-56, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25114173

ABSTRACT

Differentiation of neural lineages from human pluripotent stem cells (hPSCs) raises the hope of generating functional cells for the treatment of neural diseases. However, current protocols for differentiating hPSCs into neural lineages remain inefficient and largely variable between different hPSC lines. We report that microRNA 376c (miR-376c) significantly enhanced neural differentiation of hPSCs in a defined condition by suppressing SMAD4, the co-SMAD for TGF-ß signaling. Downstream, SMAD4 directly bound and suppressed PAX6, the critical neural lineage specification factor. Interestingly, we also found that SMAD4 binds and suppresses miR-376c clusters in undifferentiated hESCs. In summary, our findings revealed a reciprocal antagonism between miR-376c and SMAD signaling that regulates cell fate during human neural differentiation.


Subject(s)
Cell Differentiation , MicroRNAs/metabolism , Pluripotent Stem Cells/cytology , Signal Transduction , Smad4 Protein/metabolism , Transforming Growth Factor beta/metabolism , Cell Differentiation/physiology , Cells, Cultured , Gene Knockdown Techniques/methods , Humans , Pluripotent Stem Cells/metabolism , Signal Transduction/physiology
19.
Life Sci ; 108(1): 22-9, 2014 Jul 11.
Article in English | MEDLINE | ID: mdl-24834837

ABSTRACT

AIMS: Hemophilia A (HA) is a severe, congenital bleeding disorder caused by the deficiency of clotting factor VIII (FVIII). For years, traditional laboratory animals have been used to study HA and its therapies, although animal models may not entirely mirror the human pathophysiology. Human induced pluripotent stem cells (iPSCs) can undergo unlimited self-renewal and differentiate into all cell types. This study aims to generate hemophilia A (HA) patient-specific iPSCs that differentiate into disease-affected hepatocyte cells. These hepatocytes are potentially useful for in vitro disease modeling and provide an applicable cell source for autologous cell therapy after genetic correction. MAIN METHODS: In this study, we mainly generated iPSCs from urine collected from HA patients with integration-free episomal vectors PEP4-EO2S-ET2K containing human genes OCT4, SOX2, SV40LT and KLF4, and differentiated these iPSCs into hepatocyte-like cells. We further identified the genetic phenotype of the FVIII genes and the FVIII activity in the patient-specific iPSC derived hepatic cells. KEY FINDINGS: HA patient-specific iPSCs (HA-iPSCs) exhibited typical pluripotent properties evident by immunostaining, in vitro assays and in vivo assays. Importantly, we showed that HA-iPSCs could differentiate into functional hepatocyte-like cells and the HA-iPSC-derived hepatocytes failed to produce FVIII, but otherwise functioned normally, recapitulating the phenotype of HA disease in vitro. SIGNIFICANCE: HA-iPSCs, particular those generated from the urine using a non-viral approach, provide an efficient way for modeling HA in vitro. Furthermore, HA-iPSCs and their derivatives serve as an invaluable cell source that can be used for gene and cell therapy in regenerative medicine.


Subject(s)
Cell Differentiation , Hemophilia A/pathology , Hepatocytes/pathology , Induced Pluripotent Stem Cells/cytology , Models, Biological , Cell- and Tissue-Based Therapy/methods , Factor VIII/biosynthesis , Factor VIII/genetics , Genetic Therapy/methods , Hemophilia A/genetics , Hepatocytes/cytology , Humans , Kruppel-Like Factor 4 , Male , Phenotype , Regenerative Medicine/methods
20.
PLoS One ; 8(8): e70573, 2013.
Article in English | MEDLINE | ID: mdl-23940595

ABSTRACT

Induced pluripotent stem cell (iPS cell) holds great potential for applications in regenerative medicine, drug discovery, and disease modeling. We describe here a practical method to generate human iPS cells from urine-derived cells (UCs) under feeder-free, virus-free, serum-free condition and without oncogene c-MYC. We showed that this approach could be applied in a large population with different genetic backgrounds. UCs are easily accessible and exhibit high reprogramming efficiency, offering advantages over other cell types used for the purpose of iPS generation. Using the approach described in this study, we have generated 93 iPS cell lines from 20 donors with diverse genetic backgrounds. The non-viral iPS cell bank with these cell lines provides a valuable resource for iPS cells research, facilitating future applications of human iPS cells.


Subject(s)
Cell Culture Techniques/methods , Induced Pluripotent Stem Cells/cytology , Urine/cytology , Adolescent , Adult , Child , Child, Preschool , Female , Humans , Male , Middle Aged , Young Adult
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