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1.
Nature ; 628(8009): 804-810, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38538783

ABSTRACT

Sugarcane, the world's most harvested crop by tonnage, has shaped global history, trade and geopolitics, and is currently responsible for 80% of sugar production worldwide1. While traditional sugarcane breeding methods have effectively generated cultivars adapted to new environments and pathogens, sugar yield improvements have recently plateaued2. The cessation of yield gains may be due to limited genetic diversity within breeding populations, long breeding cycles and the complexity of its genome, the latter preventing breeders from taking advantage of the recent explosion of whole-genome sequencing that has benefited many other crops. Thus, modern sugarcane hybrids are the last remaining major crop without a reference-quality genome. Here we take a major step towards advancing sugarcane biotechnology by generating a polyploid reference genome for R570, a typical modern cultivar derived from interspecific hybridization between the domesticated species (Saccharum officinarum) and the wild species (Saccharum spontaneum). In contrast to the existing single haplotype ('monoploid') representation of R570, our 8.7 billion base assembly contains a complete representation of unique DNA sequences across the approximately 12 chromosome copies in this polyploid genome. Using this highly contiguous genome assembly, we filled a previously unsized gap within an R570 physical genetic map to describe the likely causal genes underlying the single-copy Bru1 brown rust resistance locus. This polyploid genome assembly with fine-grain descriptions of genome architecture and molecular targets for biotechnology will help accelerate molecular and transgenic breeding and adaptation of sugarcane to future environmental conditions.


Subject(s)
Genome, Plant , Polyploidy , Saccharum , Chromosomes, Plant/genetics , Genome, Plant/genetics , Haplotypes/genetics , Hybridization, Genetic/genetics , Plant Breeding , Saccharum/classification , Saccharum/genetics , Biotechnology , Reference Standards , DNA, Plant/genetics
2.
Ultrasound Obstet Gynecol ; 58(3): 457-468, 2021 Sep.
Article in English | MEDLINE | ID: mdl-33314410

ABSTRACT

OBJECTIVE: To evaluate the ability of demographic and sonographic variables and the Proactive Molecular Risk Classifier for Endometrial cancer (ProMisE) classification to predict preoperatively tumor recurrence or progression in women with endometrial cancer. METHODS: The study included 339 women with histologically confirmed endometrial cancer who underwent expert transvaginal ultrasound in a single center before surgery as part of the prospective International Endometrial Tumor Analysis 4 study or who were evaluated using the same protocol. The tumors were classified according to histotype, FIGO (International Federation of Gynecology and Obstetrics) grade and FIGO stage. In addition, molecular analysis was performed for classification into the four ProMisE subtypes: polymerase-ϵ exonuclease domain mutations (POLE EDM), mismatch repair proteins deficiency (MMR-D), protein 53 wild type (p53 wt) and protein 53 abnormal (p53 abn). Demographic and preoperative sonographic characteristics, tumor recurrence or progression and survival were compared between the ProMisE subgroups. Cox regression analysis was used to identify prognostic factors associated with recurrence or progression, using univariable models to study crude associations and multivariable models to study adjusted associations. Logistic regression and receiver-operating-characteristics (ROC)-curve analysis were used to assess the predictive ability of the preoperative prognostic factors regarding recurrence or progression of cancer within 3 years after surgery, and to compare their predictive ability to that of the European Society for Medical Oncology (ESMO) preoperative (based on depth of myometrial invasion, histotype and grade) and postoperative (based on histotype, grade, surgical stage and lymphovascular space invasion) risk classifications. In a separate subanalysis, cases were stratified according to ProMisE p53 abn status (present vs absent) and sonographic tumor size (anteroposterior (AP) diameter < 2 cm vs ≥ 2 cm). RESULTS: Median follow-up time from surgery was 58 months (interquartile range, 48-71 months; range, 0-102 months). Recurrence or progression of cancer occurred in 51/339 (15%) women, comprising 14% of those with MMR-D, 8% of those with POLE EDM, 9% of those with p53 wt and 45% of those with p53 abn ProMisE subtype. On multivariable analysis, age, waist circumference, ProMisE subtype and tumor extension and AP diameter on ultrasound were associated with tumor recurrence or progression. A multivariable model comprising ProMisE subtype, age, waist circumference and sonographic tumor extension and size (area under the ROC curve (AUC), 0.89 (95% CI, 0.85-0.93)) had comparable ability to predict tumor recurrence/progression to that of a multivariable model comprising histotype, grade, age, waist circumference and sonographic tumor extension and size (AUC, 0.88 (95% CI, 0.83-0.92)), and better predictive ability than both the preoperative (AUC, 0.74 (95% CI, 0.67-0.82); P < 0.01) and postoperative (AUC, 0.79 (95% CI, 0.72-0.86); P < 0.01) ESMO risk classifications. Women with a combination of non-p53 abn subtype and tumor size < 2 cm (164/339 (48%)) had a very low risk (1.8%) of tumor recurrence or progression. CONCLUSIONS: The combination of demographic characteristics, sonographic findings and ProMisE subtype had better preoperative predictive ability for tumor recurrence or progression than did the ESMO classification, supporting their use in the preoperative risk stratification of women with endometrial cancer. The combination of p53 status with ultrasound tumor size has the potential to identify preoperatively a large group of women with a very low risk of recurrence or progression. © 2020 The Authors. Ultrasound in Obstetrics & Gynecology published by John Wiley & Sons Ltd on behalf of International Society of Ultrasound in Obstetrics and Gynecology. - Legal Statement: This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.


Subject(s)
Endometrial Neoplasms/classification , Endometrial Neoplasms/genetics , Molecular Typing/statistics & numerical data , Neoplasm Recurrence, Local/genetics , Ultrasonography/statistics & numerical data , Aged , Disease Progression , Endometrial Neoplasms/surgery , Female , Humans , Logistic Models , Middle Aged , Molecular Typing/methods , Predictive Value of Tests , Preoperative Period , Prospective Studies , ROC Curve , Risk Assessment , Vagina/diagnostic imaging
3.
Ultrasound Obstet Gynecol ; 55(1): 115-124, 2020 01.
Article in English | MEDLINE | ID: mdl-31225683

ABSTRACT

OBJECTIVES: To compare the performance of ultrasound measurements and subjective ultrasound assessment (SA) in detecting deep myometrial invasion (MI) and cervical stromal invasion (CSI) in women with endometrial cancer, overall and according to whether they had low- or high-grade disease separately, and to validate published measurement cut-offs and prediction models to identify MI, CSI and high-risk disease (Grade-3 endometrioid or non-endometrioid cancer and/or deep MI and/or CSI). METHODS: The study comprised 1538 patients with endometrial cancer from the International Endometrial Tumor Analysis (IETA)-4 prospective multicenter study, who underwent standardized expert transvaginal ultrasound examination. SA and ultrasound measurements were used to predict deep MI and CSI. We assessed the diagnostic accuracy of the tumor/uterine anteroposterior (AP) diameter ratio for detecting deep MI and that of the distance from the lower margin of the tumor to the outer cervical os (Dist-OCO) for detecting CSI. We also validated two two-step strategies for the prediction of high-risk cancer; in the first step, biopsy-confirmed Grade-3 endometrioid or mucinous or non-endometrioid cancers were classified as high-risk cancer, while the second step encompassed the application of a mathematical model to classify the remaining tumors. The 'subjective prediction model' included biopsy grade (Grade 1 vs Grade 2) and subjective assessment of deep MI or CSI (presence or absence) as variables, while the 'objective prediction model' included biopsy grade (Grade 1 vs Grade 2) and minimal tumor-free margin. The predictive performance of the two two-step strategies was compared with that of simply classifying patients as high risk if either deep MI or CSI was suspected based on SA or if biopsy showed Grade-3 endometrioid or mucinous or non-endometrioid histotype (i.e. combining SA with biopsy grade). Histological assessment from hysterectomy was considered the reference standard. RESULTS: In 1275 patients with measurable lesions, the sensitivity and specificity of SA for detecting deep MI was 70% and 80%, respectively, in patients with a Grade-1 or -2 endometrioid or mucinous tumor vs 76% and 64% in patients with a Grade-3 endometrioid or mucinous or a non-endometrioid tumor. The corresponding values for the detection of CSI were 51% and 94% vs 50% and 91%. Tumor AP diameter and tumor/uterine AP diameter ratio showed the best performance for predicting deep MI (area under the receiver-operating characteristics curve (AUC) of 0.76 and 0.77, respectively), and Dist-OCO had the best performance for predicting CSI (AUC, 0.72). The proportion of patients classified correctly as having high-risk cancer was 80% when simply combining SA with biopsy grade vs 80% and 74% when using the subjective and objective two-step strategies, respectively. The subjective and objective models had an AUC of 0.76 and 0.75, respectively, when applied to Grade-1 and -2 endometrioid tumors. CONCLUSIONS: In the hands of experienced ultrasound examiners, SA was superior to ultrasound measurements for the prediction of deep MI and CSI of endometrial cancer, especially in patients with a Grade-1 or -2 tumor. The mathematical models for the prediction of high-risk cancer performed as expected. The best strategies for predicting high-risk endometrial cancer were combining SA with biopsy grade and the subjective two-step strategy, both having an accuracy of 80%. Copyright © 2019 ISUOG. Published by John Wiley & Sons Ltd.


Subject(s)
Endometrial Neoplasms/diagnostic imaging , Adult , Aged , Aged, 80 and over , Endometrial Neoplasms/pathology , Europe , Female , Humans , Middle Aged , Neoplasm Invasiveness , Neoplasm Staging , Prospective Studies , Reproducibility of Results , Sensitivity and Specificity , Ultrasonography
4.
Ultrasound Obstet Gynecol ; 51(6): 818-828, 2018 06.
Article in English | MEDLINE | ID: mdl-28944985

ABSTRACT

OBJECTIVE: To describe the sonographic features of endometrial cancer in relation to tumor stage, grade and histological type, using the International Endometrial Tumor Analysis (IETA) terminology. METHODS: This was a prospective multicenter study of 1714 women with biopsy-confirmed endometrial cancer undergoing standardized transvaginal grayscale and Doppler ultrasound examination according to the IETA study protocol, by experienced ultrasound examiners using high-end ultrasound equipment. Clinical and sonographic data were entered into a web-based database. We assessed how strongly sonographic characteristics, according to IETA, were associated with outcome at hysterectomy, i.e. tumor stage, grade and histological type, using univariable logistic regression and the c-statistic. RESULTS: In total, 1538 women were included in the final analysis. Median age was 65 (range, 27-98) years, median body mass index was 28.4 (range 16-67) kg/m2 , 1377 (89.5%) women were postmenopausal and 1296 (84.3%) reported abnormal vaginal bleeding. Grayscale and color Doppler features varied according to grade and stage of tumor. High-risk tumors, compared with low-risk tumors, were less likely to have regular endometrial-myometrial junction (difference of -23%; 95% CI, -27 to -18%), were larger (mean endometrial thickness; difference of +9%; 95% CI, +8 to +11%), and were more likely to have non-uniform echogenicity (difference of +7%; 95% CI, +1 to +13%), a multiple, multifocal vessel pattern (difference of +21%; 95% CI, +16 to +26%) and a moderate or high color score (difference of +22%; 95% CI, +18 to +27%). CONCLUSION: Grayscale and color Doppler sonographic features are associated with grade and stage of tumor, and differ between high- and low-risk endometrial cancer. Copyright © 2017 ISUOG. Published by John Wiley & Sons Ltd.


Subject(s)
Endometrial Neoplasms/diagnostic imaging , Neoplasm Grading , Ultrasonography, Doppler, Color/standards , Adult , Aged , Aged, 80 and over , Consensus Development Conferences as Topic , Cross-Sectional Studies , Endometrial Neoplasms/classification , Endometrial Neoplasms/pathology , Female , Humans , Middle Aged , Prospective Studies , Reproducibility of Results , Terminology as Topic
5.
Histopathology ; 53(3): 325-32, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18637968

ABSTRACT

AIMS: Endometrial intraepithelial neoplasia (EIN) is a monoclonal precursor to endometrioid endometrial adenocarcinoma characterized by a geographic cluster of crowded glands with epithelial cytology altered relative to the background. It may demonstrate epithelial metaplastic changes, or arise within polyps, but the frequencies of these features as encountered in practice is unknown. The aim was to report the epithelial differentiation state and polyp context of 83 sequential EIN lesions diagnosed over a 2-year period. METHODS AND RESULTS: EIN is a rare lesion, seen in only 1.4% of endometrial biopsy specimens in a busy hospital-based practice. Of 83 EIN cases, 39 contained metaplastic changes (18% squamous morular, 14% tubal secretory and 5% each of secretory, mucinous or ciliated change). Endometrial polyps were more likely (odds ratio 5.2, P < 0.001) to occur in the endometrial biopsy specimens of women with EIN lesions (43.3%), compared with the background polyp rate (12.9%) of comparable specimens from the same patient population. CONCLUSIONS: Non-endometrioid differentiation and occurrence within polyps are frequent presentations of EIN lesions. Possible mechanisms of polyp association with EIN include: non-shedding of polyp tissue creating a shelter for persistence of pre-existing neoplastic glands, or promotion of premalignant glandular clones by unique polyp stroma.


Subject(s)
Endometrial Neoplasms/pathology , Polyps/pathology , Adult , Aged , Aged, 80 and over , Cell Differentiation , Endometrial Neoplasms/metabolism , Epithelial Cells/cytology , Epithelial Cells/pathology , Female , Humans , Metaplasia/metabolism , Middle Aged , Young Adult
6.
Histopathology ; 51(3): 305-12, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17727473

ABSTRACT

AIMS: Small cell carcinoma of the ovary, hypercalcaemic-type (SCCOH) is morphologically similar to small cell carcinomas from other sites. The aims of this study were to (i) determine if a biomarker panel would distinguish small cell carcinomas of the ovary, cervix (SCCCx) and lung (SCCLu) and (ii) potentially determine the histogenesis of SCCOH. METHODS AND RESULTS: Nine ovarian small cell carcinomas (seven hypercalcaemic type; two pulmonary type), eight SCCCx and 22 SCCLu were immunostained for thyroid transcription factor (TTF)-1, WT-1, p16, cKIT and OCT3/4; a subset of cases were tested for human papillomavirus (HPV). WT-1 was diffusely positive in 6/7 SSCOH versus two of 33 other small cell carcinomas (P

Subject(s)
Biomarkers/analysis , Carcinoma, Small Cell/pathology , Lung Neoplasms/pathology , Ovarian Neoplasms/pathology , Uterine Cervical Neoplasms/pathology , Adolescent , Adult , Aged , Aged, 80 and over , Carcinoma, Small Cell/metabolism , Carcinoma, Small Cell/virology , Cyclin-Dependent Kinase Inhibitor p16/analysis , Diagnosis, Differential , Female , Humans , Immunohistochemistry , In Situ Hybridization , Lung Neoplasms/metabolism , Male , Middle Aged , Nuclear Proteins/analysis , Octamer Transcription Factor-3/analysis , Ovarian Neoplasms/metabolism , Papillomaviridae/genetics , Papillomaviridae/growth & development , Proto-Oncogene Proteins c-kit/analysis , Thyroid Nuclear Factor 1 , Transcription Factors/analysis , Uterine Cervical Neoplasms/metabolism , Uterine Cervical Neoplasms/virology , WT1 Proteins/analysis
7.
Histopathology ; 51(4): 509-14, 2007 Oct.
Article in English | MEDLINE | ID: mdl-17711447

ABSTRACT

AIMS: Nuclear staining for beta-catenin by immunohistochemistry is being used increasingly to diagnose desmoid tumours (deep fibromatoses), especially where the differential diagnosis includes other abdominal spindle cell neoplasms. This study aimed to define the prevalence of beta-catenin positivity in desmoid tumours and other morphologically similar spindle cell neoplasms. METHOD AND RESULTS: Nuclear beta-catenin expression was evaluated by immunohistochemistry in 270 soft tissue tumours. Nuclear immunopositivity was detected in 80% of cases of sporadic desmoid fibromatosis (24/30) and in 67% of tumours in patients with familial adenomatous polyposis (8/12). Nuclear positivity was also present in 14/25 superficial fibromatoses (56%), 3/10 low-grade myofibroblastic sarcomas (30%), 5/23 solitary fibrous tumours (22%), 1/5 infantile fibrosarcomas (20%), 1/18 desmoplastic fibroblastomas (6%) and 1/21 gastrointestinal stromal tumours (5%). No nuclear immunoreactivity was present in neurofibromas (0/26), schwannomas (0/25), nodular fasciitis (0/19), leiomyosarcomas (0/16), inflammatory myofibroblastic tumours (0/12), fibromas of tendon sheath (0/9), lipofibromatoses (0/5), Gardner fibromas (0/4), calcifying aponeurotic fibromas (0/4) or fibromatosis colli (0/1). CONCLUSION: Nuclear staining for beta-catenin is supportive, but not definitive, of the diagnosis of desmoid fibromatosis. No significant difference in immunoreactivity was observed between sporadic and familial desmoid fibromatoses. beta-Catenin negativity does not preclude the diagnosis of fibromatosis.


Subject(s)
Abdominal Neoplasms/chemistry , Sarcoma/chemistry , beta Catenin/analysis , Abdominal Neoplasms/diagnosis , Abdominal Neoplasms/pathology , Biomarkers, Tumor/analysis , Cell Nucleus/chemistry , Cell Nucleus/pathology , Diagnosis, Differential , Fibromatosis, Abdominal/diagnosis , Fibromatosis, Abdominal/pathology , Humans , Immunohistochemistry , Sarcoma/diagnosis , Sarcoma/pathology
8.
Obstet Gynecol Surv ; 56(9): 567-75, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11524622

ABSTRACT

The incidence of cervical adenocarcinoma in situ is increasing in frequency, and our limited knowledge about this lesion presents the physician with a therapeutic dilemma. Treatment for this lesion has included conservative therapy, large loop excision or cold-knife cone biopsy, or definitive therapy consisting of hysterectomy. But, rates of residual adenocarcinoma in situ after cone biopsy with negative margins vary from 0% to 40%, and residual disease rates as high as 80% have been noted when the margins are positive. Despite these recent data on follow-up after conservative therapy such as cone biopsy, it seems that this method is safe and gaining acceptance by many physicians and patients. However, the short follow-up duration and small number of patients limit the conclusions of many studies. The relative infrequency of this diagnosis has precluded extensive clinical experience with the natural history of this lesion.


Subject(s)
Adenocarcinoma , Carcinoma in Situ , Uterine Cervical Neoplasms , Adenocarcinoma/diagnosis , Adenocarcinoma/epidemiology , Adenocarcinoma/therapy , Biopsy , Carcinoma in Situ/diagnosis , Carcinoma in Situ/epidemiology , Carcinoma in Situ/therapy , Female , Humans , Hysterectomy , Neoplasm Recurrence, Local , Neoplasm, Residual , Uterine Cervical Neoplasms/diagnosis , Uterine Cervical Neoplasms/epidemiology , Uterine Cervical Neoplasms/therapy
9.
Cancer Res ; 61(11): 4382-5, 2001 Jun 01.
Article in English | MEDLINE | ID: mdl-11389064

ABSTRACT

The FHIT gene is a candidate tumor suppressor gene that has been implicated in the development of cervical carcinoma. We hypothesized that abnormal Fhit expression might be a poor prognostic factor for patients with cervical cancer. The tumors from 59 high-risk patients (stage II-III) were evaluated for abnormal Fhit expression by immunohistochemical staining. Abnormal Fhit expression (absent or reduced) was noted in 66% of the specimens. There was no statistical difference with respect to stage, performance status, para-aortic node metastasis, completion of therapy, grade, race, age, and HIV status between the normal and abnormal Fhit expression groups. The 3-year survival for patients whose tumors displayed normal Fhit expression versus abnormal Fhit expression was 74% versus 37%, respectively. Univariate analysis demonstrated a difference in survival that was statistically significant for age <55 years versus > or =55 years (P = 0.015), normal Fhit expression versus abnormal Fhit expression (P = 0.015), and stage II versus stage III (P = 0.033). Multivariate analysis showed that abnormal Fhit expression was a poor prognostic factor (P = 0.015).


Subject(s)
Acid Anhydride Hydrolases , Carcinoma, Squamous Cell/metabolism , Neoplasm Proteins/biosynthesis , Protein Biosynthesis , Uterine Cervical Neoplasms/metabolism , Adult , Aged , Aged, 80 and over , Carcinoma, Squamous Cell/genetics , Carcinoma, Squamous Cell/pathology , Female , Genes, Tumor Suppressor , Humans , Middle Aged , Neoplasm Proteins/genetics , Neoplasm Staging , Prognosis , Proportional Hazards Models , Proteins/genetics , Risk Factors , Survival Rate , Uterine Cervical Neoplasms/genetics , Uterine Cervical Neoplasms/pathology
10.
Cancer ; 91(4): 869-73, 2001 Feb 15.
Article in English | MEDLINE | ID: mdl-11241257

ABSTRACT

BACKGROUND: [corrected] It was the purpose of this study to investigate whether race is an independent prognostic factor in the survival of patients with cervical carcinoma in a health care system with minimal racial bias, and few barriers to access to care. METHODS: Records for patients with a diagnosis of invasive cervical carcinoma from 1988 to 1999 were obtained from the Automated Central Tumor Registry for the United States Military Health Care System. Clinical data including race, age at diagnosis, histology, grade, stage, socioeconomic status, treatment modality, and survival also were obtained. Survival analysis was performed with Kaplan-Meier survival curves. RESULTS: One thousand five hundred fifty-three patients were obtained for review. Sixty-five percent of patients were Caucasian, and 35% were minorities. Of the minorities, 29% were African Americans (AAs). Mean age of diagnosis was similar among AAs and Caucasians, 44 and 42 years, respectively. There was no statistically significant difference between the distribution of age, stage, grade, or histology between Caucasians and AAs. Forty-six percent of patients were treated with surgery and 56% with radiation therapy, with no difference in type of treatment between the Caucasian and AA groups. Five- and 10-year survival rates for Caucasians and AAs were 75%, and 76%, and 64% 65% (P = 0.59), respectively. CONCLUSIONS: In an equal access, unbiased, nonracial environment, race is not an independent predictor of survival for patients with cervical carcinoma. This study has shown, for the first time to the authors' knowledge, that when they receive equal treatment for cervical carcinoma, AA women's survival can approach that of their nonminority counterparts (75% at 10 years).


Subject(s)
Black or African American , Health Services Accessibility , Uterine Cervical Neoplasms/therapy , Black or African American/statistics & numerical data , Female , Humans , Prognosis , Survival Analysis , United States/epidemiology , Uterine Cervical Neoplasms/ethnology , White People/statistics & numerical data
11.
J Low Genit Tract Dis ; 5(2): 82-4, 2001 Apr.
Article in English | MEDLINE | ID: mdl-17043580

ABSTRACT

OBJECTIVE: To evaluate the efficacy of metronidazole versus no treatment for the empiric treatment of inflammatory cytologic changes. MATERIALS AND METHODS: Patients with inflammatory changes on Pap smear were serially assigned to receive no treatment or metronidazole by one of three regimens: 2 grams orally as a single dose, 500 milligrams orally twice daily for 7 days, or 5 grams (in gel form) vaginally twice daily for 5 days. Smears were repeated 3 months after treatment. RESULTS: The repeat smear was normal in 47 of 63 patients treated with a single dose, 40 of 62 patients treated orally for 7 days, 14 of 21 patients treated with vaginal gel, and 29 of 49 of the control group. Chi-square analysis showed no statistical significance between groups. CONCLUSION: There is no statistically significant difference in the resolution of cytologic inflammatory changes among the study groups. Empiric metronidazole treatment has no benefit.

12.
J Magn Reson ; 147(2): 210-6, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11097811

ABSTRACT

A continuous transformation of an RF waveform with a modified Korteweg-de Vries equation or generalization can be used to adjust the phase behavior of a selective excitation pulse while preserving the magnitude behavior of the spin response. This transformation has applications in removing or adding to the nonlinear phase properties of a selected region.


Subject(s)
Magnetic Resonance Imaging/methods , Mathematics , Radio Waves
13.
J Acquir Immune Defic Syndr ; 21(1): 42-50, 1999 May 01.
Article in English | MEDLINE | ID: mdl-10235513

ABSTRACT

OBJECTIVE: To estimate and compare the HIV risks among three Hispanic subpopulations. METHODS: Chronic drug users participating in a nationwide intervention study on drug use were interviewed with regard to drug use and sexual behavior. HIV risk was estimated using information about individuals' HIV-relevant behaviors, the social context (i.e., city) in which such behaviors occur, and published estimates of HIV transmission for various risk behaviors. Multiple linear regression analysis was used to investigate differences in estimated HIV risk between Puerto Rican, Mexican-American, and Mexican drug users, accounting for sociodemographic factors, sexual preference, and geographic region. RESULTS: Puerto Ricans had significantly greater estimated overall HIV risk, estimated injection risk, and in general, significantly greater estimated sexual risk than Mexican Americans and Mexicans. No significant differences were found in any estimated risk between Mexican Americans and Mexicans in this sample. No significant differences were found among any of the subgroups for estimated risk from having anal sex while using a condom, or from having receptive anal sex without using a condom. CONCLUSIONS: These findings suggest that Puerto Ricans who use drugs experience a higher risk of HIV infection than other Hispanic drug users. Research is needed to identify which economic, social, and cultural components account for this increased risk.


Subject(s)
HIV Infections/ethnology , Hispanic or Latino/statistics & numerical data , Substance Abuse, Intravenous/complications , Adult , Educational Status , Employment , Female , HIV Antibodies/blood , HIV Infections/etiology , Ill-Housed Persons , Humans , Linear Models , Male , Marital Status , Mexico/ethnology , Middle Aged , Puerto Rico/ethnology , Risk Factors , Sexual Behavior , Substance Abuse, Intravenous/ethnology , United States/epidemiology
14.
J Behav Health Serv Res ; 26(1): 28-38, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10069139

ABSTRACT

The Drug-Free Workplace Act of 1988 mandated written drug abuse policies for recipients of certain government grants and contracts. The literature has reported costly side effects of employee drug abuse such as decreased productivity and increased use of health benefits. Furthermore, litigation involving drug abuse policies has been increasingly won by employers. More than 90% of Fortune 1000 companies have adopted formal drug abuse policies. Using content analysis techniques, the current study examined the written substance abuse policies of 30 large American teaching hospitals. Results showed substantial variation in the style and content of the policies. In general, language used in the policies was vague. The study cites the potential use of strategic ambiguity in the development of the policies.


Subject(s)
Hospitals, Teaching/legislation & jurisprudence , Occupational Diseases/prevention & control , Substance Abuse Detection/legislation & jurisprudence , Substance-Related Disorders/prevention & control , Financial Support , Humans , Organizational Policy , United States
15.
J Struct Biol ; 123(1): 37-44, 1998 Sep.
Article in English | MEDLINE | ID: mdl-9774543

ABSTRACT

A phospholipid bilayer of nanometer dimension has been used as a support for the study of reconstituted functional single-membrane proteins. This nanobilayer consists of an approximately 10-nm-diameter circular phospholipid domain stabilized by apolipoprotein A1. As a demonstration of this methodology, we formed the nanobilayers in the presence of hepatic microsomal NADPH-cytochrome P450 reductase. Incubation of a solution of enzyme-containing nanobilayers with a freshly cleaved mica substrate resulted in the spontaneous formation of a fully oriented supported monolayer of discoidal phospholipid domains. The P450-reductase in the oriented monolayer retains its catalytic activity. Characterization by scanning force microscopy revealed isolated single-membrane proteins that could be stably imaged over time. These results define a novel technique for the study of single-membrane proteins in a bilayer environment.


Subject(s)
Membrane Proteins/ultrastructure , NADH, NADPH Oxidoreductases/ultrastructure , Aluminum Silicates/metabolism , Apolipoprotein A-I/metabolism , Humans , Lipid Bilayers/metabolism , Lipoproteins, HDL/ultrastructure , Microscopy, Atomic Force , Microsomes, Liver , NADPH-Ferrihemoprotein Reductase , Phospholipids/metabolism , Surface Properties , Trypsin/metabolism
16.
Subst Use Misuse ; 33(11): 2201-17, 1998 Sep.
Article in English | MEDLINE | ID: mdl-9758011

ABSTRACT

Drug use is related to the environment in which drug users live. Using 32 economic, housing, crime, and health variables for 1990 census tracts in Houston, Texas, this study found four identifiable factors: social disorganization, economic success, threat of violence, and chronic disease. Narcotic offenses loaded strongly on one and weakly on two of the factors; this variable did not load on the economic success factor. These results suggest that a textured look at drug use environments finds them to be multidimensional. Urban dwellers must deal with the independent effects of social disorganization, economic conditions, chronic disease, and violence.


Subject(s)
Social Environment , Substance-Related Disorders/epidemiology , Urban Population/statistics & numerical data , Anomie , Crime/statistics & numerical data , Factor Analysis, Statistical , Health Status Indicators , Humans , Opioid-Related Disorders/epidemiology , Opioid-Related Disorders/psychology , Residence Characteristics/statistics & numerical data , Socioeconomic Factors , Substance-Related Disorders/psychology , Texas/epidemiology
17.
Biophys J ; 73(3): 1184-9, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9284285

ABSTRACT

The atomic force microscope (AFM) has been used to image a variety of biological systems, but has rarely been applied to soluble protein-lipid complexes. One of the primary physiological protein-lipid complexes is the high-density lipoproteins (HDL), responsible for the transport of cholesterol from the peripheral tissues and other lipoproteins to the liver. We have used the AFM to directly image discoidal reconstituted HDL (rHDL) particles for the first time. The height of these particles is consistent with a phospholipid bilayer structure, but careful high resolution measurements of particle diameters has indicated that they fuse when adsorbed to mica. Furthermore, it has been demonstrated that the AFM can be used to initiate this bilayer fusion in a controlled manner, allowing the fabrication of stabilized, nanometer scale, phospholipid bilayer "domains."


Subject(s)
Lipid Bilayers , Lipoproteins, HDL/chemistry , Lipoproteins, HDL/ultrastructure , Adsorption , Aluminum Silicates , Microscopy, Atomic Force/methods , Microscopy, Electron
18.
Gynecol Oncol ; 65(2): 325-9, 1997 May.
Article in English | MEDLINE | ID: mdl-9159346

ABSTRACT

The objective of this study was to evaluate the efficacy of oral ciprofloxacin in preventing febrile morbidity superimposed on the neutropenia induced from a paclitaxel regimen in ovarian cancer patients. Eligible patients received paclitaxel at doses of 135 to 175 mg/m2 alone or in combination with a platinum agent. They were randomized to either an observation (control) group or a ciprofloxacin prophylaxis group. Patients in the ciprofloxacin group received 500 mg ciprofloxacin orally twice a day once the absolute neutrophil count (ANC) was less than 500/mm3 and continued until the ANC was greater than 1000/mm3. Ninety patients were enrolled between the control (n = 45) and ciprofloxacin (n = 45) groups. They received 371 cycles of a paclitaxel-based regimen with 177 and 194 cycles in the control and ciprofloxacin groups, respectively. Ciprofloxacin prophylaxis was prescribed for 138 (71%) of the cycles in the ciprofloxacin group and was given for a mean duration of 7.7 days per cycle. The groups were similar in disease status and risk factors for neutropenia. Fifteen patients in the control group developed febrile neutropenia versus 12 of those in the ciprofloxacin group (P = 0.69). The mean ANC and mean length of hospital stay for neutropenic fever were also similar between groups. There was a greater frequency of an ANC < 100 associated with those prophylaxed with ciprofloxacin (P = 0.01). Only 44% of the febrile episodes were associated with a positive culture. Staphylococcus aureus was the most frequently reported organism isolated. Considering these results, it does not appear that febrile neutropenia is reduced by ciprofloxacin during grade IV neutropenia.


Subject(s)
Anti-Infective Agents/administration & dosage , Antineoplastic Agents, Phytogenic/adverse effects , Bacterial Infections/prevention & control , Ciprofloxacin/administration & dosage , Ovarian Neoplasms/drug therapy , Paclitaxel/adverse effects , Administration, Oral , Adult , Aged , Bacterial Infections/etiology , Female , Humans , Middle Aged , Neutropenia/chemically induced , Neutropenia/complications
19.
Rehabil Nurs ; 22(1): 7-13, 19, 1997.
Article in English | MEDLINE | ID: mdl-9110837

ABSTRACT

Because of its cost-effective approach to impairment and disability, rehabilitation therapy is uniquely positioned to assume a significant role in today's healthcare environment. As the cost of health care has become a major concern, both the government and the private insurance industry have turned toward rehabilitation services as resources for preventing more costly use of the healthcare system in the future. Although funding in the area of injury research scarce, funding for demonstrating the success of therapies for chronic illness such as HIV is more plentiful. In the case of HIV, rehabilitation nursing techniques and principles can be used as a model for reducing the substantial social costs of the disease. Specifically, rehabilitation nurses can assume a leadership role as service coordinators for HIV-positive patients. If rehabilitation nurses perform this role effectively and participate fully in research efforts aimed at measuring the success of rehabilitation therapy, their efforts have the potential of permanently raising the status of the rehabilitation nursing specialty.


Subject(s)
HIV Infections/economics , HIV Infections/rehabilitation , Managed Care Programs/economics , Rehabilitation Nursing/economics , Cost-Benefit Analysis , Humans , Models, Nursing , Outcome Assessment, Health Care , Rehabilitation Nursing/organization & administration
20.
Obstet Gynecol Surv ; 51(12): 710-7, 1996 Dec.
Article in English | MEDLINE | ID: mdl-8972494

ABSTRACT

Advances in molecular biology have facilitated the recent investigation of gynecological malignancies. The presence of certain oncogenes within gynecological tumors indicates that transformation may be associated with genetic alteration of normal regulatory processes. This paper reviews several oncogenes that have been implicated in the transformation of gynecological tissues.


Subject(s)
Cell Transformation, Neoplastic/genetics , Genital Neoplasms, Female/genetics , Oncogenes/genetics , Chromosome Aberrations , Female , Humans , Risk Factors
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