Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 28
Filter
1.
J Med Genet ; 43(6): 507-11, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16155194

ABSTRACT

BACKGROUND: The EphB2 gene was recently implicated as a prostate cancer (PC) tumour suppressor gene, with somatic inactivating mutations occurring in approximately 10% of sporadic tumours. We evaluated the contribution of EphB2 to inherited PC susceptibility in African Americans (AA) by screening the gene for germline polymorphisms. METHODS: Direct sequencing of the coding region of EphB2 was performed on 72 probands from the African American Hereditary Prostate Cancer Study (AAHPC). A case-control association analysis was then carried out using the AAHPC probands and an additional 183 cases of sporadic PC compared with 329 healthy AA male controls. In addition, we performed an ancestry adjusted association study where we adjusted for individual ancestry among all subjects, in order to rule out a spurious association due to population stratification. RESULTS: Ten coding sequence variants were identified, including the K1019X (3055A-->T) nonsense mutation which was present in 15.3% of the AAHPC probands but only 1.7% of 231 European American (EA) control samples. We observed that the 3055A-->T mutation significantly increased risk for prostate cancer over twofold (Fisher's two sided test, p = 0.003). The T allele was significantly more common among AAHPC probands (15.3%) than among healthy AA male controls (5.2%) (odds ratio 3.31; 95% confidence interval 1.5 to 7.4; p = 0.008). The ancestry adjusted analyses confirmed the association. CONCLUSIONS: Our data show that the K1019X mutation in the EphB2 gene differs in frequency between AA and EA, is associated with increased risk for PC in AA men with a positive family history, and may be an important genetic risk factor for prostate cancer in AA.


Subject(s)
Black or African American/genetics , Codon, Nonsense , Genetic Predisposition to Disease , Prostatic Neoplasms/ethnology , Prostatic Neoplasms/genetics , Receptor, EphB2/genetics , Adult , Aged , Alleles , Genetic Testing , Humans , Male , Middle Aged , Polymorphism, Genetic , Prostatic Neoplasms/diagnosis , Risk Factors , United States
2.
J Intern Med ; 257(1): 18-26, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15606373

ABSTRACT

The hyperparathyroidism-jaw tumour (HPT-JT) syndrome is an autosomal dominant disorder characterized by parathyroid tumours, which are frequently carcinomas, and ossifying jaw fibromas. In addition, some patients may develop renal tumours and cysts. The gene causing HPT-JT, which is referred to as HRPT2 and is located on chromosome 1q31.2, encodes a 531 amino acid protein called PARAFIBROMIN. To date 42 mutations, of which 22 are germline, have been reported and 97% of these are inactivating and consistent with a tumour suppressor role for HRPT2. We have investigated another four HPT-JT families for germline mutations, searched for additional clinical phenotypes, and examined for a genotype-phenotype correlation. Mutations were found in two families. One family had a novel deletional-insertion at codon 669, and the other had a 2 bp insertion at codon 679, which has been reported in four other unrelated patients. These five unrelated patients and their families with the same mutation were not found to develop the same tumours, thereby indicating an absence of a genotype-phenotype correlation. An analysis of 33 HPT-JT kindreds revealed that affected women in 13 HPT-JT families suffered from menorrhagia in their second to fourth decades. This often required hysterectomy, which revealed the presence of uterine tumours. This resulted in a significantly reduced maternal transmission of the disease. Thus, the results of our analysis expand the spectrum of HPT-JT-associated tumours to include uterine tumours, and these may account for the decreased reproductive fitness in females from HPT-JT families.


Subject(s)
Hyperparathyroidism/genetics , Jaw Neoplasms/genetics , Neoplasms, Multiple Primary/genetics , Uterine Neoplasms/genetics , Adult , Family Health , Female , Genotype , Humans , Hyperparathyroidism/pathology , Jaw Neoplasms/pathology , Male , Menorrhagia/complications , Menorrhagia/pathology , Middle Aged , Mutation , Neoplasms, Multiple Primary/pathology , Phenotype , Proteins/genetics , Syndrome , Tumor Suppressor Proteins , Uterine Neoplasms/pathology
4.
J Intern Med ; 253(6): 634-42, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12755959

ABSTRACT

Amongst hyperparathyroidism-related syndromes, hyperparathyroidism-jaw tumour syndrome is one of the least common and relatively unknown but its clinical and genetic aspects are not less interesting or important. With the recent identification of its genes, we can now better characterize the disease, both clinically and genetically, which will certainly impact the field of endocrinology and oncology. In this article, we review the clinico-pathological features and genetic basis of this syndrome with the hope that it will create awareness and interest in this disease amongst clinicians and basic scientists.


Subject(s)
Hyperparathyroidism/genetics , Jaw Neoplasms/genetics , Genes, Tumor Suppressor , Humans , Hyperparathyroidism/pathology , Jaw Neoplasms/pathology , Kidney Neoplasms/genetics , Kidney Neoplasms/pathology , Maxillary Neoplasms/genetics , Maxillary Neoplasms/pathology , Multiple Endocrine Neoplasia Type 1 , Parathyroid Neoplasms/pathology , Syndrome
5.
Nat Genet ; 32(4): 676-80, 2002 Dec.
Article in English | MEDLINE | ID: mdl-12434154

ABSTRACT

We report here the identification of a gene associated with the hyperparathyroidism-jaw tumor (HPT-JT) syndrome. A single locus associated with HPT-JT (HRPT2) was previously mapped to chromosomal region 1q25-q32. We refined this region to a critical interval of 12 cM by genotyping in 26 affected kindreds. Using a positional candidate approach, we identified thirteen different heterozygous, germline, inactivating mutations in a single gene in fourteen families with HPT-JT. The proposed role of HRPT2 as a tumor suppressor was supported by mutation screening in 48 parathyroid adenomas with cystic features, which identified three somatic inactivating mutations, all located in exon 1. None of these mutations were detected in normal controls, and all were predicted to cause deficient or impaired protein function. HRPT2 is a ubiquitously expressed, evolutionarily conserved gene encoding a predicted protein of 531 amino acids, for which we propose the name parafibromin. Our findings suggest that HRPT2 is a tumor-suppressor gene, the inactivation of which is directly involved in predisposition to HPT-JT and in development of some sporadic parathyroid tumors.


Subject(s)
Adenoma/genetics , Genetic Predisposition to Disease , Germ-Line Mutation , Hyperparathyroidism/genetics , Parathyroid Neoplasms/genetics , Proteins/genetics , Adenoma/pathology , Amino Acid Sequence , Base Sequence , Chromosomes, Human, Pair 1 , Exons , Expressed Sequence Tags , Genes, Tumor Suppressor , Genetic Linkage , Genetic Testing , Genotype , Heterozygote , Humans , Microsatellite Repeats , Molecular Sequence Data , Open Reading Frames , Parathyroid Neoplasms/chemistry , Parathyroid Neoplasms/pathology , Pedigree , Proteins/chemistry , Syndrome , Tumor Suppressor Proteins
6.
Int J Cancer ; 95(6): 354-9, 2001 Nov 20.
Article in English | MEDLINE | ID: mdl-11668516

ABSTRACT

Androgens are essential for prostate development, growth and maintenance and the association between androgen levels and prostate cancer is well established. Since the CYP17 gene encodes the enzyme cytochrome P450c17alpha, which mediates 17alpha-hydroxylase and 17,20-lyase activities in the androgen biosynthesis pathway, sequence variations in the gene and association with increased risk to prostate cancer has been studied. In particular, several groups have studied the association between a polymorphism in the 5' promoter region and prostate cancer using a population-based association approach. However, the results from these studies were inconclusive. To further study this polymorphism and its possible role in hereditary prostate cancer (HPC), we performed a genetic linkage analysis and family-based association analysis in 159 families, each of which contains at least 3 first-degree relatives with prostate cancer. In addition, we performed a population-based association analysis to compare the risk of this polymorphism to hereditary and sporadic prostate cancer in 159 HPC probands, 249 sporadic prostate cancer patients and 211 unaffected control subjects. Evidence for linkage at the CYP17 gene region was found in the total 159 HPC families (LOD = 1.3, p = 0.01, at marker D10S222). However, family-based association tests did not provide evidence for overtransmission of either allele of the CYP17 polymorphism to affected individuals in the HPC families. The allele and genotype frequencies of the polymorphism were not statistically different among the HPC probands, sporadic cases and unaffected control subjects. In conclusion, our results suggest that the CYP17 gene or other genes in the region may increase the susceptibility to prostate cancer in men; however, the polymorphism in the 5' promoter region has a minor role if any in increasing prostate cancer susceptibility in our study sample.


Subject(s)
Genetic Linkage , Prostatic Neoplasms/genetics , Steroid 17-alpha-Hydroxylase/genetics , Adult , Aged , Alleles , Family Health , Genetic Predisposition to Disease , Genotype , Humans , Male , Middle Aged , Mutation , Polymorphism, Genetic , Promoter Regions, Genetic
7.
Am J Hum Genet ; 69(2): 341-50, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11443539

ABSTRACT

Multiple lines of evidence have implicated the short arm of chromosome 8 as harboring genes important in prostate carcinogenesis. Although most of this evidence comes from the identification of frequent somatic alterations of 8p loci in prostate cancer cells (e.g., loss of heterozygosity), studies have also suggested a role for 8p genes in mediation of inherited susceptibility to prostate cancer. To further examine this latter possibility, we performed linkage analyses, in 159 pedigrees affected by hereditary prostate cancer (HPC), using 24 markers on the short arm of chromosome 8. In the complete set of families, evidence for prostate cancer linkage was found at 8p22-23, with a peak HLOD of 1.84 (P=.004), and an estimate of the proportion of families linked (alpha) of 0.14, at D8S1130. In the 79 families with average age at diagnosis >65 years, an allele-sharing LOD score of 2.64 (P=.0005) was observed, and six markers spanning a distance of 10 cM had LOD scores >2.0. Interestingly, the small number of Ashkenazi Jewish pedigrees (n=11) analyzed in this study contributed disproportionately to this linkage. Mutation screening in HPC probands and association analyses in case subjects (a group that includes HPC probands and unrelated case subjects) and unaffected control subjects were carried out for the putative prostate cancer-susceptibility gene, PG1, previously localized to the 8p22-23 region. No statistical differences in the allele, genotype, or haplotype frequencies of the SNPs or other sequence variants in the PG1 gene were observed between case and control subjects. However, case subjects demonstrated a trend toward higher homozygous rates of less-frequent alleles in all three PG1 SNPs, and overtransmission of a PG1 variant to case subjects was observed. In summary, these results provide evidence for the existence of a prostate cancer-susceptibility gene at 8p22-23. Evaluation of the PG1 gene and other candidate genes in this area appears warranted.


Subject(s)
Chromosome Mapping , Chromosomes, Human, Pair 8/genetics , Genetic Linkage/genetics , Genetic Predisposition to Disease/genetics , Prostatic Neoplasms/genetics , Age of Onset , Alleles , DNA Mutational Analysis , Female , Gene Frequency/genetics , Genetic Markers/genetics , Genetic Testing , Genotype , Humans , Jews/genetics , Lod Score , Male , Microsatellite Repeats/genetics , Molecular Sequence Data , Mutation/genetics , Odds Ratio , Pedigree , Polymorphism, Single Nucleotide/genetics , Polymorphism, Single-Stranded Conformational , Prostatic Neoplasms/epidemiology , Racial Groups/genetics
8.
Hum Genet ; 108(4): 335-45, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11379880

ABSTRACT

Three prostate cancer susceptibility genes have been reported to be linked to different regions on chromosome 1: HPC1 at 1q24-25, PCAP at 1q42-43, and CAPB at 1p36. Replication studies analyzing each of these regions have yielded inconsistent results. To evaluate linkage across this chromosome systematically, we performed multipoint linkage analyses with 50 microsatellite markers spanning chromosome 1 in 159 hereditary prostate cancer families (HPC), including 79 families analyzed in the original report describing HPC1 linkage. The highest lod scores for the complete dataset of 159 families were observed at 1q24-25 at which the parametric lod score assuming heterogeneity (hlod) was 2.54 (P=0.0006) with an allele sharing lod of 2.34 (P=0.001) at marker D1S413, although only weak evidence was observed in the 80 families not previously analyzed for this region (hlod=0.44, P=0.14, and allele sharing lod=0.67, P=0.08). In the complete data set, the evidence for linkage across this region was very broad, with allele sharing lod scores greater than 0.5 extending approximately 100 cM from 1p13 to 1q32, possibly indicating the presence of multiple susceptibility genes. Elsewhere on chromosome 1, some evidence of linkage was observed at 1q42-43, with a peak allele sharing lod of 0.56 (P=0.11) and hlod of 0.24 (P=0.25) at D1S235. For analysis of the CAPB locus at 1p36, we focused on six HPC families in our collection with a history of primary brain cancer; four of these families had positive linkage results at 1p36, with a peak allele sharing lod of 0.61 (P=0.09) and hlod of 0.39 (P=0.16) at D1S407 in all six families. These results are consistent with the heterogeneous nature of hereditary prostate cancer, and the existence of multiple loci on chromosome 1 for this disease.


Subject(s)
Chromosomes, Human, Pair 1 , Genetic Linkage , Prostatic Neoplasms/genetics , Chromosome Mapping , Genetic Diseases, Inborn/genetics , Genetic Predisposition to Disease/genetics , Humans , Male , Microsatellite Repeats
9.
Eur J Hum Genet ; 9(5): 364-74, 2001 May.
Article in English | MEDLINE | ID: mdl-11378825

ABSTRACT

Sitosterolaemia (phytosterolaemia) is an autosomal recessive disorder characterised by the presence of tendon xanthomas in the face of normal or mildly elevated plasma cholesterol levels, premature atherosclerotic disease and has diagnostically elevated plasma and tissue plant sterol concentrations. Affected individuals show an increased absorption of both cholesterol and sitosterol from the diet, decreased bile clearance of these sterols and their metabolites resulting in markedly expanded whole body cholesterol and sitosterol pools. The defective gene is therefore hypothesised to play a crucial role in regulating dietary cholesterol absorption, and its elucidation may shed light on these molecular processes. We have previously localised the defective gene to human chromosome 2p21, between microsatellite markers D2S1788 and D2S1352, a distance of approximately 15 cM. Recently, the disease locus interval has been narrowed to lie between D2S2294 and D2S2291/D2S2174. We have constructed a high-resolution YAC and BAC contigs by using known STSs and generating novel STSs from the minimal interval. Eight previously identified genes and 60 ESTs were mapped to these contigs. The BAC contig contains 60 BAC clones and 108 STSs and encompasses a physical distance of approximately 2.0 cM between microsatellite markers D2S2294 and D2S2291. These results will not only facilitate cloning of the sitosterolaemia gene, but also other disease genes located in this region, and accelerate sequencing of the corresponding genomic clones.


Subject(s)
Arteriosclerosis/genetics , Chromosomes, Human, Pair 2 , Metabolic Diseases/genetics , Sitosterols/metabolism , Chromosome Mapping , Chromosomes, Artificial, Bacterial , Chromosomes, Artificial, Yeast , Cloning, Molecular , Contig Mapping/methods , DNA Primers , Databases, Factual , Expressed Sequence Tags , Humans , Metabolic Diseases/metabolism , Physical Chromosome Mapping , Polymerase Chain Reaction/methods , Transcription, Genetic
10.
Genomics ; 73(2): 211-22, 2001 Apr 15.
Article in English | MEDLINE | ID: mdl-11318611

ABSTRACT

The aim of this study was to develop a saturated transcript map of the region encompassing the HPC1 locus to identify the susceptibility genes involved in hereditary prostate cancer (OMIM 176807) and hyperparathyroidism-jaw tumor syndrome (OMIM 145001). We previously reported the generation of a 6-Mb BAC/PAC contig of the candidate region and employed various strategies, such as database searching, exon-trapping, direct cDNA hybridization, and sample sequencing of BACs, to identify all potential transcripts. These efforts led to the identification and precise localization on the BAC contig of 59 transcripts representing 22 known genes and 37 potential transcripts represented by ESTs and exon traps. Here we report the detailed characterization of these ESTs into full-length transcript sequences, their expression pattern in various tissues, their genomic organization, and their homology to known genes. We have also identified an Alu insertion polymorphism in the intron of one of the transcripts. Overall, data on 13 novel transcripts and the human RGS8 gene (homologue of the rat RGS8 gene) are presented in this paper. Ten of the 13 novel transcripts are expressed in prostate tissue and represent positional candidates for HPC1.


Subject(s)
Chromosomes, Human, Pair 1 , Neoplastic Syndromes, Hereditary/genetics , Prostatic Neoplasms/genetics , RGS Proteins/genetics , tRNA Methyltransferases/genetics , Amino Acid Sequence , Animals , Contig Mapping , DNA, Complementary , Expressed Sequence Tags , Gene Expression , Gene Expression Profiling/methods , Genetic Predisposition to Disease , Genome, Human , Humans , Hyperparathyroidism/genetics , Jaw Neoplasms/genetics , Male , Molecular Sequence Data , Mutation , Parathyroid Neoplasms/genetics , Rats , Sequence Homology, Amino Acid , Transcription, Genetic
12.
Am J Hum Genet ; 68(4): 901-11, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11254448

ABSTRACT

To investigate the relationship between HPC2/ELAC2 and prostate cancer risk, we performed the following analyses: (1) a linkage study of six markers in and around the HPC2/ELAC2 gene at 17p11 in 159 pedigrees with hereditary prostate cancer (HPC); (2) a mutation-screening analysis of all coding exons of the gene in 93 probands with HPC; (3) family-based and population-based association study of common HPC2/ELAC2 missense variants in 159 probands with HPC, 249 patients with sporadic prostate cancer, and 222 unaffected male control subjects. No evidence for linkage was found in the total sample, nor in any subset of pedigrees based on characteristics that included age at onset, number of affected members, male-to-male disease transmission, or race. Furthermore, only the two previously reported missense changes (Ser217Leu and Ala541Thr) were identified by mutational analysis of all HPC2/ELAC exons in 93 probands with HPC. In association analyses, family-based tests did not reveal excess transmission of the Leu217 and/or Thr541 alleles to affected offspring, and population-based tests failed to reveal any statistically significant difference in the allele frequencies of the two polymorphisms between patients with prostate cancer and control subjects. The results of this study lead us to reject the three alternative hypotheses of (1) a highly penetrant, major prostate cancer-susceptibility gene at 17p11, (2) the allelic variants Leu217 or Thr541 of HPC2/ELAC2 as high-penetrance mutations, and (3) the variants Leu217 or Thr541 as low-penetrance, risk-modifying alleles. However, we did observe a trend of higher Leu217 homozygous carrier rates in patients than in control subjects. Considering the impact of genetic heterogeneity, phenocopies, and incomplete penetrance on the linkage and association studies of prostate cancer and on the power to detect linkage and association in our study sample, our results cannot rule out the possibility of a highly penetrant prostate cancer gene at this locus that only segregates in a small number of pedigrees. Nor can we rule out a prostate cancer-modifier gene that confers a lower-than-reported risk. Additional larger studies are needed to more fully evaluate the role of this gene in prostate cancer risk.


Subject(s)
Genetic Linkage/genetics , Genetic Predisposition to Disease/genetics , Neoplasm Proteins/genetics , Prostatic Neoplasms/genetics , Age of Onset , Alleles , Amino Acid Substitution/genetics , Chromosomes, Human, Pair 17/genetics , DNA Mutational Analysis , Exons/genetics , Gene Frequency/genetics , Genetic Testing , Genotype , Humans , Lod Score , Male , Microsatellite Repeats/genetics , Mutation/genetics , Pedigree , Penetrance , Polymorphism, Single Nucleotide/genetics , Prostatic Neoplasms/epidemiology , White People/genetics
13.
J Lipid Res ; 42(2): 159-69, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11181744

ABSTRACT

Cerebrotendinous xanthomatosis (CTX) is a rare autosomal recessive disorder of bile acid biosynthesis. Clinically, CTX patients present with tendon xanthomas, juvenile cataracts, and progressive neurological dysfunction and can be diagnosed by the detection of elevated plasma cholestanol levels. CTX is caused by mutations affecting the sterol 27-hydroxylase gene (CYP27 ). CTX has been identified in a number of populations, but seems to have a higher prevalence in the Japanese, Sephardic Jewish, and Italian populations. We have assembled 12 previously unreported pedigrees from the United States. The CYP27 locus had been previously mapped to chromosome 2q33-qter. We performed linkage analyses and found no evidence of genetic heterogeneity. All CTX patients showed segregation with the CYP27 locus, and haplotype analysis and recombinant events allowed us to precisely map CYP27 to chromosome 2q35, between markers D2S1371 and D2S424. Twenty-three mutations were identified from 13 probands analyzed thus far; 11 were compound heterozygotes and 2 had homozygous mutations. Of these, five are novel mutations [Trp100Stop, Pro408Ser, Gln428Stop, a 10-base pair (bp) deletion in exon 1, and a 2-bp deletion in exon 6 of the CYP27 gene]. Three-dimensional structural modeling of sterol 27-hydroxylase showed that, while the majority of the missense mutations disrupt the heme-binding and adrenodoxin-binding domains critical for enzyme activity, two missense mutations (Arg94Trp/Gln and Lys226Arg) are clearly located outside these sites and may identify a potential substrate-binding or other protein contact site.


Subject(s)
Cytochrome P-450 Enzyme System/genetics , Mutation , Steroid Hydroxylases/genetics , Xanthomatosis, Cerebrotendinous/genetics , Adolescent , Adult , Aged , Amino Acid Sequence , Base Sequence , Cholestanetriol 26-Monooxygenase , Chromosomes, Artificial, Yeast , Cytochrome P-450 Enzyme System/chemistry , DNA Primers , Exons , Female , Genetic Linkage , Genotype , Humans , Male , Middle Aged , Models, Molecular , Molecular Sequence Data , Pedigree , Prevalence , Protein Conformation , Sequence Homology, Amino Acid , Steroid Hydroxylases/chemistry , United States/epidemiology , Xanthomatosis, Cerebrotendinous/epidemiology , Xanthomatosis, Cerebrotendinous/ethnology
14.
Cancer Metastasis Rev ; 20(3-4): 155-64, 2001.
Article in English | MEDLINE | ID: mdl-12085959

ABSTRACT

Since the first report of a genome-wide scan for hereditary prostate cancer (HPCA hereinafter) in 1996, several publications have presented data implicating various chromosomal regions by linkage analysis without any consequential identifications of the target genes. The most intensive attention has been focused on chromosome 1, and it has been proposed to contain at least three sub-chromosomal regions (HPC1, PCAP, CAPB) harboring putative prostate cancer susceptibility genes. Nevertheless, one susceptibility gene, ELAC2/HPC2 at chromosome 17, has now been identified. Yet it seems to have a questionable role in prostate cancer predisposition. HPCA susceptibility loci have become undeniable archenemies of prostate cancer investigators, as the results of candidate gene analyses have been bewilderingly inconclusive. Predisposition to prostate cancer is most likely to be caused by several genes, different models of Mendelian inheritance, incomplete penetrance and varying population ethnicity frequencies. We will review the current state of the HPCA field and discuss the difficulties associated with identifying prostate cancer susceptibility genes.


Subject(s)
Genetic Predisposition to Disease/genetics , Loss of Heterozygosity , Neoplasm Proteins/genetics , Prostatic Neoplasms/genetics , Chromosome Mapping , Humans , Male
15.
Biochim Biophys Acta ; 1491(1-3): 285-8, 2000 Apr 25.
Article in English | MEDLINE | ID: mdl-10760592

ABSTRACT

Ral GDP dissociation stimulator (RalGDS) and its family members RGL, RLF and RGL2 are involved in Ras and Ral signaling pathways as downstream effector proteins. Here we report the precise localization and cloning of two forms of human RGL gene differing at the amino terminus. Transcript A, cloned from liver cDNA libraries has the same amino terminus as the mouse RGL, whereas transcript B cloned from brain has a substitution of 45 amino acids for the first nine amino acids. At the genomic level, exon 1 of transcript A is replaced by two alternative exons (1B1 and 1B2) in transcript B. Both forms share exons 2 through 18. The human RGL protein shares 94% amino acid identity with the mouse protein. Northern blot analysis shows that human RGL is expressed in a wide variety of tissues with strong expression being seen in the heart, brain, kidney, spleen and testis.


Subject(s)
Guanine Nucleotide Exchange Factors/genetics , Amino Acid Sequence , Blotting, Northern , Brain/metabolism , Cloning, Molecular , DNA, Complementary/genetics , Gene Expression , Humans , Liver/metabolism , Molecular Sequence Data , Reverse Transcriptase Polymerase Chain Reaction , Signal Transduction , ras Proteins/metabolism
16.
Am J Hum Genet ; 66(2): 539-46, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10677314

ABSTRACT

Recent studies suggest that hereditary prostate cancer (PRCA) is a complex disease, involving multiple susceptibility genes and variable phenotypic expression. Through linkage analysis, potential prostate cancer susceptibility loci have been mapped to 3 regions on chromosome 1. To investigate the reported linkage to these regions, we conducted linkage studies on 144 PRCA families by using microsatellite markers in regions 1q24-25 (HPC1) and 1q42.2-43 (PCAP). We also examined the 1p36 (CAPB) region in 13 PRCA families with at least one case of brain cancer. No significant evidence of linkage to the HPC1 or PCAP region was found when the entire data set was analyzed. However, weak evidence for linkage to HPC1 was observed in the subset of families with male-to-male transmission (n=102; maximum multipoint nonparametric linkage [NPL] 1.99, P=.03). Weak evidence for linkage with heterogeneity within this subset was also observed (HLOD 1.21, P=.02), with approximately 20% of families linked. Although not statistically significant, suggestive evidence for linkage to PCAP was observed for the families (n=21) that met the three criteria of male-to-male transmission, average age of diagnosis <66 years, and >/=5 affected individuals (maximum multipoint NPL 1.45, P=.08). There was no evidence for linkage to CAPB in the brain cancer-prostate cancer subset. These results strengthen the argument that prostate cancer is a heterogeneous disease and that multiple genetic and environmental factors may be important for its etiology.


Subject(s)
Chromosome Mapping , Chromosomes, Human, Pair 1/genetics , Lod Score , Microsatellite Repeats/genetics , Prostatic Neoplasms/genetics , Aged , Brain Neoplasms/genetics , Female , Genetic Heterogeneity , Genetic Predisposition to Disease/genetics , Genetic Variation/genetics , Humans , Male , Middle Aged , Models, Genetic , Pedigree
17.
Genomics ; 64(1): 1-14, 2000 Feb 15.
Article in English | MEDLINE | ID: mdl-10708513

ABSTRACT

Several hereditary disease loci have been genetically mapped to the chromosome 1q24-q31 interval, including the hereditary prostate cancer 1 (HPC1) locus. Here, we report the construction of a 20-Mb yeast artificial chromosome contig and a high-resolution 6-Mb sequence-ready bacterial artificial chromosome (BAC)/P1-derived artificial chromosome (PAC) contig of 1q25 by sequence and computational analysis, STS content mapping, and chromosome walking. One hundred thirty-six new STSs, including 10 novel simple sequence repeat polymorphisms that are being used for genetic refinement of multiple disease loci, have been generated from this contig and are shown to map to the 1q25 interval. The integrity of the 6-Mb BAC/PAC contig has been confirmed by restriction fingerprinting, and this contig is being used as a template for human chromosome 1 genome sequencing. A transcription mapping effort has resulted in the precise localization of 18 known genes and 31 ESTs by database searching, exon trapping, direct cDNA hybridization, and sample sequencing of BACs from the 1q25 contig. An additional 11 known genes and ESTs have been placed within the larger 1q24-q31 interval. These transcription units represent candidate genes for multiple hereditary diseases, including HPC1.


Subject(s)
Chromosomes, Human, Pair 1 , Physical Chromosome Mapping , Prostatic Neoplasms/genetics , Base Sequence , Chromosomes, Artificial, Yeast , Contig Mapping , DNA Fingerprinting/methods , DNA, Complementary , Genetic Predisposition to Disease , Humans , Male , Molecular Sequence Data , Polymorphism, Genetic , Repetitive Sequences, Nucleic Acid , Transcription, Genetic
18.
Nat Genet ; 23(3): 319-22, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10545950

ABSTRACT

Altered growth and function of synoviocytes, the intimal cells which line joint cavities and tendon sheaths, occur in a number of skeletal diseases. Hyperplasia of synoviocytes is found in both rheumatoid arthritis and osteoarthritis, despite differences in the underlying aetiologies of the two disorders. We have studied the autosomal recessive disorder camptodactyly-arthropathy-coxa vara-pericarditis syndrome (CACP; MIM 208250) to identify biological pathways that lead to synoviocyte hyperplasia, the principal pathological feature of this syndrome. Using a positional-candidate approach, we identified mutations in a gene (CACP) encoding a secreted proteoglycan as the cause of CACP. The CACP protein, which has previously been identified as both 'megakaryocyte stimulating factor precursor' and 'superficial zone protein', contains domains that have homology to somatomedin B, heparin-binding proteins, mucins and haemopexins. In addition to expression in joint synovium and cartilage, CACP is expressed in non-skeletal tissues including liver and pericardium. The similarity of CACP sequence to that of other protein families and the expression of CACP in non-skeletal tissues suggest it may have diverse biological activities.


Subject(s)
Joint Diseases/genetics , Pericarditis/genetics , Proteoglycans/genetics , Proteoglycans/metabolism , Amino Acid Sequence , Animals , Base Sequence , Cattle , DNA Mutational Analysis , Female , Genotype , Humans , Hyperplasia/genetics , Hyperplasia/pathology , Joint Diseases/pathology , Male , Molecular Sequence Data , Mutation , Pericarditis/pathology , Phenotype , Proteoglycans/chemistry , RNA, Messenger/analysis , RNA, Messenger/genetics , Sequence Homology, Amino Acid , Syndrome , Synovial Membrane/metabolism , Synovial Membrane/pathology
19.
Cancer Res ; 57(21): 4707-9, 1997 Nov 01.
Article in English | MEDLINE | ID: mdl-9354426

ABSTRACT

In a recent study of 91 families having at least three first degree relatives with prostate cancer, we reported the localization of a major susceptibility locus for prostate cancer (HPC1) to chromosome 1 [band q24; J. R. Smith et al., Science (Washington DC), 274: 1371-1373, 1996]. There was significant evidence for locus heterogeneity, with an estimate of 34% of the families being linked to this locus. In this report, we investigate the importance of age at diagnosis of prostate cancer and number of affected individuals within a family as variables in the linkage analysis of an expanded set of markers on 1q24. Under two different models for the prostate cancer locus, we find that the evidence for linkage to HPC1 is provided primarily by large (five or more members affected) families with an early average age at diagnosis. Specifically, for 40 North American families with an average age at diagnosis <65 years, the multipoint lod score is 3.96, whereas for 39 families with an older average age at diagnosis, this value is -0.84. Assuming heterogeneity, the proportion of families linked is 66% for the 14 families with the earliest average ages at diagnoses, but it decreases to 7% for the families with the latest ages at diagnoses. A similar age effect is observed in 12 Swedish pedigrees analyzed. To test the hypotheses generated by these analyses, we examined an additional group of 13 newly identified prostate cancer families. Overall, these families provided additional evidence for linkage to this region (nonparametric linkage Z = 1.91; P = 0.04 at marker D1S1660), contributed primarily by the families in this group with early age at diagnosis [nonparametric linkage Z = 2.50 (P = 0.01) at D1S422]. These results are consistent with the existence of a locus in this region that predisposes men to develop early-onset prostate cancer.


Subject(s)
Chromosomes, Human, Pair 1/genetics , Family , Genetic Linkage , Models, Genetic , Prostatic Neoplasms/genetics , Age Factors , Aged , Aged, 80 and over , Disease Susceptibility , Genetic Markers , Humans , Male , Middle Aged , Sweden , United States
20.
JAMA ; 278(15): 1251-5, 1997 Oct 15.
Article in English | MEDLINE | ID: mdl-9333266

ABSTRACT

CONTEXT: Approximately 9% of prostate cancer cases have been estimated to result from inheritance of mutated prostate cancer susceptibility genes. Few data exist as to whether there are clinical differences between prostate cancers that are inherited and those that occur in the general population. OBJECTIVE: To investigate phenotypic characteristics of families potentially linked to the hereditary prostate cancer 1 (HPC1) locus on chromosome 1q24-25. DESIGN: Retrospective case study in which clinical data were extracted from medical and pathological records. FAMILIES: A total of 74 North American families with hereditary prostate cancer. Prostate cancer cases from the National Cancer Data Base were used as a reference population for comparison. MAIN OUTCOME MEASURES: The families were divided into 2 groups: either potentially linked (33 families with 133 men with prostate cancer), and thus likely to be carrying an altered HPC1 gene, or potentially unlinked (41 families with 172 men with prostate cancer), on the basis of haplotype analysis in the region of HPC1. The age at diagnosis of prostate cancer, serum prostate-specific antigen levels, digital rectal examination status, stage, grade, primary treatment of prostate cancers, and occurrence of other cancers were compared between the groups. RESULTS: The mean age at diagnosis of prostate cancer for men in potentially linked families was significantly lower than for men in potentially unlinked families (63.7 vs 65.9 years, respectively, P=.01; mean age at diagnosis in the reference population was 71.6 years). Higher-grade cancers (grade 3) were more common in potentially linked families, and advanced-stage disease was found in 41% of the case patients in potentially linked families compared with 31% in both the potentially unlinked families and the reference groups (P=.03 for the latter comparison). In the other clinical parameters, we found no significant differences between the groups. A modest excess of breast cancer and colon cancer was found in potentially linked families in comparison with potentially unlinked families, but this difference was not statistically significant. CONCLUSIONS: Families that provide evidence for segregation of an altered HPC1 gene are characterized by multiple cases of prostate cancer that, in most respects, are indistinguishable from nonhereditary cases. However, 3 characteristics were observed: younger age at diagnosis, higher-grade tumors, and more advanced-stage disease. Our study shows that a significant fraction of hereditary prostate cancers are diagnosed in advanced stages, emphasizing the clinical importance of early detection in men potentially carrying prostate cancer susceptibility genes. These findings support the current recommendations to screen men with a positive family history of prostate cancer beginning at age 40 years.


Subject(s)
Chromosomes, Human, Pair 1 , Genetic Linkage , Prostatic Neoplasms/genetics , Age Factors , Aged , Chromosomes, Human, Pair 1/genetics , Haplotypes , Humans , Likelihood Functions , Male , Microsatellite Repeats , Middle Aged , Neoplasm Staging , Pedigree , Phenotype , Poisson Distribution , Prostatic Neoplasms/epidemiology , Prostatic Neoplasms/pathology , Prostatic Neoplasms/prevention & control , Retrospective Studies
SELECTION OF CITATIONS
SEARCH DETAIL
...