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1.
Nucleic Acids Res ; 41(2): 1135-50, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23175604

ABSTRACT

Ribosome biogenesis is a multi-step process that couples cell growth with cell proliferation. Although several large-scale analysis of pre-ribosomal particles have identified numerous trans-acting factors involved in this process, many proteins involved in pre-rRNA processing and ribosomal subunit maturation have yet to be identified. Las1 was originally identified in Saccharomyces cerevisiae as a protein involved in cell morphogenesis. We previously demonstrated that the human homolog, Las1L, is required for efficient ITS2 rRNA processing and synthesis of the 60S ribosomal subunit. Here, we report that the functions of Las1 in ribosome biogenesis are also conserved in S. cerevisiae. Depletion of Las1 led to the accumulation of both the 27S and 7S rRNA intermediates and impaired the synthesis of the 60S subunit. We show that Las1 co-precipitates mainly with the 27S rRNA and associates with an Nsa1 and Rix1-containing pre-60S particle. We further identify Grc3 as a major Las1-interacting protein. We demonstrate that the kinase activity of Grc3 is required for efficient pre-rRNA processing and that depletion of Grc3 leads to rRNA processing defects similar to the ones observed in Las1-depleted cells. We propose that Las1 and Grc3 function together in a conserved mechanism to modulate rRNA processing and eukaryotic ribosome biogenesis.


Subject(s)
Nuclear Proteins/metabolism , Polynucleotide 5'-Hydroxyl-Kinase/metabolism , RNA Processing, Post-Transcriptional , RNA, Ribosomal/metabolism , Ribosome Subunits, Large, Eukaryotic/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Cell Cycle , Nuclear Proteins/physiology , Polynucleotide 5'-Hydroxyl-Kinase/genetics , Polynucleotide 5'-Hydroxyl-Kinase/physiology , RNA Precursors/metabolism , Ribosomal Proteins/analysis , Ribosome Subunits, Large, Eukaryotic/chemistry , Ribosomes/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/analysis , Saccharomyces cerevisiae Proteins/physiology
2.
Mol Biol Cell ; 23(4): 716-28, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22190735

ABSTRACT

The coordination of RNA polymerase I transcription with pre-rRNA processing, preribosomal particle assembly, and nuclear export is a finely tuned process requiring the concerted actions of a number of accessory factors. However, the exact functions of some of these proteins and how they assemble in subcomplexes remain poorly defined. LAS1L was first described as a nucleolar protein required for maturation of the 60S preribosomal subunit. In this paper, we demonstrate that LAS1L interacts with PELP1, TEX10, and WDR18, the mammalian homologues of the budding yeast Rix1 complex, along with NOL9 and SENP3, to form a novel nucleolar complex that cofractionates with the 60S preribosomal subunit. Depletion of LAS1L-associated proteins results in a p53-dependent G1 arrest and leads to defects in processing of the pre-rRNA internal transcribed spacer 2 region. We further show that the nucleolar localization of this complex requires active RNA polymerase I transcription and the small ubiquitin-like modifier-specific protease SENP3. Taken together, our data identify a novel mammalian complex required for 60S ribosomal subunit synthesis, providing further insight into the intricate, yet poorly described, process of ribosome biogenesis in higher eukaryotes.


Subject(s)
Nuclear Proteins/metabolism , Ribosome Subunits, Large, Eukaryotic/metabolism , Cell Nucleolus/metabolism , Co-Repressor Proteins/metabolism , Cysteine Endopeptidases/metabolism , G1 Phase Cell Cycle Checkpoints/genetics , HCT116 Cells , HEK293 Cells , Humans , Nuclear Proteins/genetics , Polynucleotide 5'-Hydroxyl-Kinase/metabolism , Sumoylation , Transcription Factors/metabolism , Tumor Suppressor Protein p53/metabolism
3.
Mol Cell Biol ; 30(18): 4404-14, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20647540

ABSTRACT

Ribosome biogenesis is a highly regulated process ensuring that cell growth (increase in biomass) is coordinated with cell proliferation. The formation of eukaryotic ribosomes is a multistep process initiated by the transcription and processing of rRNA in the nucleolus. Concomitant with this, several preribosomal particles, which transiently associate with numerous nonribosomal factors before mature 60S and 40S subunits are formed and exported in the cytoplasm, are generated. Here we identify Las1L as a previously uncharacterized nucleolar protein required for ribosome biogenesis. Depletion of Las1L causes inhibition of cell proliferation characterized by a G1 arrest dependent on the tumor suppressor p53. Moreover, we demonstrate that Las1L is crucial for ribosome biogenesis and that depletion of Las1L leads to inhibition of rRNA processing and failure to synthesize the mature 28S rRNA. Taken together, our data demonstrate that Las1L is essential for cell proliferation and biogenesis of the 60S ribosomal subunit.


Subject(s)
Cell Proliferation , Nuclear Proteins/metabolism , Ribosome Subunits, Large, Eukaryotic/metabolism , Ribosomes/metabolism , Amino Acid Sequence , Animals , Cell Cycle/physiology , Cell Line , Humans , Molecular Sequence Data , Nuclear Proteins/genetics , RNA Interference , RNA, Ribosomal/genetics , RNA, Ribosomal/metabolism , Ribosome Subunits, Large, Eukaryotic/genetics , Sequence Alignment , Tumor Suppressor Protein p53/genetics , Tumor Suppressor Protein p53/metabolism
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