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1.
J Chem Theory Comput ; 2024 Oct 03.
Article in English | MEDLINE | ID: mdl-39360658

ABSTRACT

We present the implementation of the Hubbard (U) and Hund (J) corrected Density Functional Theory (DFT + U + J) functionality in the Quickstep program, which is part of the CP2K suite. The tensorial and Löwdin subspace representations are implemented and compared. Full analytical DFT + U + J forces are implemented and benchmarked for the tensorial and Löwdin representations. We also present the implementation of the recently proposed minimum-tracking linear-response method that enables the U and J parameters to be calculated on first-principles basis without reference to the Kohn-Sham eigensystem. These implementations are benchmarked against recent results for different materials properties including DFT + U band gap opening in NiO, the relative stability of various polaron distributions in TiO2, the dependence of the calculated TiO2 band gap on +J corrections, and, finally, the role of the +U and +J corrections for the computed properties of a series of the hexahydrated transition metals. Our implementation provides results consistent with those already reported in the literature from comparable methods. We conclude the contribution with tests on the influence of the Löwdin orthonormalization on the occupancies, calculated parameters, and derived properties.

2.
J Chem Theory Comput ; 2024 Sep 06.
Article in English | MEDLINE | ID: mdl-39240723

ABSTRACT

In electrochemical experiments, the number of electrons of the electrode immersed in the electrolyte is usually variable. Additionally, the numbers of adsorbed substances on the surface of the electrode, the solvent molecules, and counter charge ions in the near-surface region can also vary. Treating electrochemical solid-liquid interfaces with the typical fixed electron number density functional theory (DFT) approach tends to be a challenge. This can be addressed by using grand canonical ensemble approaches. We present the implementation of two grand canonical ensemble approaches in the open-source computational chemistry software CP2K that go beyond the existing canonical ensemble paradigm. The first approach is based on implicit solvent models and explicit atomistic solute (electrode with/without adsorbed species) models, and includes two recent developments: (a) grand canonical self-consistent field (GC-SCF) method (J. Chem. Phys. 2017, 146, 114104) allowing the electron number of the system to fluctuate naturally and accordingly with the experimental electrode potential, (b) planar counter charge (J. Chem. Phys. 2019, 150, 041722, Phys. Rev. B 2003, 68, 245416) salt model completely screening the net charge of the electrode model. In contrast with previous studies, in our implementation, the work function (WF) (absolute electrode potential if the potential drop at the electrolyte-vacuum interface is omitted) is the constrained quantity during an SCF optimization instead of the Fermi energy. The chemical potential of electrons (negative WF) is a natural variable of the grand potential in the GC ensemble of electronic states, and this method can easily achieve stable SCF convergence and obtain an electronic structure that precisely corresponds to a user-specified WF. The second approach referred to as the GC DFT molecular dynamics (DFT-MD) simulation scheme (Phys. Rev. Lett. 2002, 88, 213002, J. Chem. Phys. 2005, 122, 234505, J. Am. Chem. Soc. 2004, 126 (12), 3928-3938) is based on fully explicit modeling the solvent molecules and the ions and is used to calculate the electron chemical potential corresponding to an equilibrium electrochemical half-reaction (M(n+m)+ + ne- ⇌ Mm+) which involves DFT-MD, by allowing the number of electrons to vary during the DFT-MD simulation process. This opens the way for forefront electrochemical calculations in CP2K for a broad range of systems.

3.
RSC Sustain ; 2(6): 1738-1752, 2024 Jun 05.
Article in English | MEDLINE | ID: mdl-38845685

ABSTRACT

Advancing towards alternative technologies for the sustainable production of hydrogen is a necessity for the successful integration of this potentially green fuel in the future. Photocatalytic and photoelectrochemical water splitting are promising concepts in this context. Over the past decades, researchers have successfully explored several materials classes, such as oxides, nitrides, and oxynitrides, in their quest for suitable photocatalysts with a focus on reaching higher efficiencies. However, to pave the way towards practicability, understanding degradation processes and reaching stability is essential, a domain where research has been scarcer. This perspective aims at providing an overview on recent progress concerning stability and degradation with a focus on (oxy)nitride photocatalysts and at providing insights into the opportunities and challenges coming along with the investigation of degradation processes and the attempts to improve the stability of photocatalysts.

4.
J Phys Chem Lett ; 15(10): 2859-2866, 2024 Mar 14.
Article in English | MEDLINE | ID: mdl-38445979

ABSTRACT

Transition metal hydr(oxy)oxides (TMHs) are considered efficient electrocatalysts for the oxygen evolution reaction (OER) under alkaline conditions. Toward identification of potential descriptors to circumvent the scaling relation limit for the OER, first-principles calculations were used to quantify the effects on the overpotential of different s (Mg), p (Al), and d (Ti, V, Cr, Fe, Co, Sc, and Zn) electron dopants in Ni-based TMHs. Both the adsorbate evolution mechanism (AEM) and the lattice oxygen-mediated mechanism (LOM) were examined. The results demonstrate that the formation energy of oxygen vacancies (EVO) is strongly affected by the chemical nature of the dopants. A linear relationship is identified between EVO and the free energy difference for the oxygen-oxygen coupling. A descriptor could be employed to discriminate whether the LOM is energetically favored over the AEM. These findings fill existing gaps in appropriate yet computationally light descriptors for direct identification between the AEM and LOM.

5.
Spectrochim Acta A Mol Biomol Spectrosc ; 310: 123959, 2024 Apr 05.
Article in English | MEDLINE | ID: mdl-38290280

ABSTRACT

In this study, we have constructed a ratiometric fluorescence sensor for sensitive sensing of α-glucosidase activity based on WS2 QDs/ CoOOH nanosheet system. In this system, as an oxidase-imimicking nanomaterial, CoOOH nanosheet could convert o-phenylenediamine into 2,3-diaminophenazine (DAP), which had a high fluorescence emission at 575 nm. The DAP subsequently could quench the fluorescence of WS2 QDs via the inner filter effect (IFE). L-Ascorbic acid-2-O-α-D-glucopyranose could be hydrolyzed by α-glucosidase to yield ascorbic acid. CoOOH nanosheet can be converted to Co2+ ions by ascorbic acid, leading to the fluorescence decrease of DAP and the fluorescence recovery of WS2 QDs. Therefore, a novel ratio fluorescence sensing strategy was established for α-glucosidase detection based on WS2 QDs/CoOOH nanosheet system. This WS2 QDs/CoOOH nanosheet system has a low detection limit of 0.009 U/mL for α-Glu assay. The proposed strategy succeeded in detecting α-Glu in human serum samples.


Subject(s)
Cobalt , Quantum Dots , alpha-Glucosidases , Humans , Fluorescence , Fluorescent Dyes , Oxides , Spectrometry, Fluorescence , Ascorbic Acid , Limit of Detection
6.
Adv Mater ; 33(23): e2100407, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33909930

ABSTRACT

Although oxygen vacancies (Ov s) play a critical role for many applications of metal oxides, a controllable synthetic strategy for anisotropic Ov s remains a great challenge. Here, a novel strategy is proposed to achieve the regional dual structure with anisotropic Ov s at both the surface and in the interior of TiO2 by constructing amorphous domains. The as-prepared black TiO2 with amorphous domains exhibits superior activity in degrading rhodamine B (RhB) solutions, which can instantly decompose RhB with just a shake. First-principle simulations reveal that subsurface Ov s in TiO2 are energetically favored, resulting in the formation of amorphous domains in the interior region via diffusion of surface-formed Ov s into the subsurface. The stable Ov -induced amorphous domains in TiO2 with enhanced catalytic performances provide a scalable strategy to practical Ov engineering in functional metal oxides.

7.
Nanoscale Adv ; 2(5): 1869-1877, 2020 May 19.
Article in English | MEDLINE | ID: mdl-36132525

ABSTRACT

By combined use of wide-angle X-ray scattering, thermo-gravimetric analysis, inelastic neutron scattering, density functional theory and density functional theory molecular dynamics simulations, we investigate the structure, dynamics and stability of the water wetting-layer in single-walled aluminogermanate imogolite nanotubes (SW Ge-INTs): an archetypal system for synthetically controllable and monodisperse nano-reactors. We demonstrate that the water wetting-layer is strongly bound and solid-like up to 300 K under atmospheric pressure, with dynamics markedly different from that of bulk water. Atomic-scale characterisation of the wetting-layer reveals organisation of the H2O molecules in a curved triangular sublattice stabilised by the formation of three H-bonds to the nanotube's inner surface, with covalent interactions sufficiently strong to promote energetically favourable decoupling of the H2O molecules in the adlayer. The evidenced changes in the local composition, structure, electrostatics and dynamics of the Ge-INT's inner surface upon the formation of the solid wetting-layer demonstrate solvent-mediated functionalisation of the nanotube's cavity at room temperature and pressure, suggesting new strategies for the design of nano-rectors towards potential control of chemical reactivity in nano-confined volumes.

8.
J Am Chem Soc ; 141(23): 9305-9311, 2019 Jun 12.
Article in English | MEDLINE | ID: mdl-31117651

ABSTRACT

Exploring high-performance zeolite-supported metal catalysts is of great significance. Herein, we develop a strategy for fabricating isolated single metal atomic site catalysts in Y zeolite (M-ISAS@Y, M = Pt, Pd, Ru, Rh, Co, Ni, Cu) by in situ separating and confining a metal-ethanediamine complex into ß-cages during the crystallization process followed by thermal treatment. The M-ISAS are stabilized by skeletal oxygens of Y zeolite, and the crystallinity, porosity, and large surface area are well inherited in M-ISAS@Y. As a demonstration, acidic Pt-ISAS@Y is used for n-hexane isomerization involving consecutive catalytic dehydrogenation/hydrogenation on Pt-ISAS and isomerization on Brønsted acid sites. The turnover frequency value of Pt-ISAS reaches 727 h-1, 5 times more than Pt nanoparticles (∼3.5 nm), with a total isomer selectivity of more than 98%. This strategy provides a convenient route to fabricate promising zeolite-based M-ISAS catalysts for industrial applications.

9.
Nat Commun ; 9(1): 2033, 2018 05 23.
Article in English | MEDLINE | ID: mdl-29789570

ABSTRACT

Determination of the atomic structure of inorganic single-walled nanotubes with complex stoichiometry remains elusive due to the too many atomic coordinates to be fitted with respect to X-ray diffractograms inherently exhibiting rather broad features. Here we introduce a methodology to reduce the number of fitted variables and enable resolution of the atomic structure for inorganic nanotubes with complex stoichiometry. We apply it to recently synthesized methylated aluminosilicate and aluminogermanate imogolite nanotubes of nominal composition (OH)3Al2O3Si(Ge)CH3. Fitting of X-ray scattering diagrams, supported by Density Functional Theory simulations, reveals an unexpected rolling mode for these systems. The transferability of the approach opens up for improved understanding of structure-property relationships of inorganic nanotubes to the benefit of fundamental and applicative research in these systems.

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