Comparative analyses of the faecal resistome against ß-lactam and quinolone antibiotics in humans and livestock using metagenomic sequencing.

To assess the prevalence and abundance of antibiotic resistance genes in human and livestock gut microbiomes, 87 humans (healthy individuals and patients with Clostridioides difficile infection (CDI)) and 108 livestock (swine, cattle, and chickens) were enrolled. Gut microbiomes and fluoroquinolone-resistant Escherichia coli isolates were sequenced, and mobile genetic elements adjacent to the ß-lactamase (bla) and transferable quinolone resistance (qnr) genes were compared using metagenomic contigs. Each group of humans and livestock exhibited distinctive microbiota and resistome compositions in the gut. Concerning the resistome of bla and qnr, the prevalence rates between chickens and patients with CDI were the most similar (R2 = 0.46); blaTEM, blaOXA, blaCTX-M, and qnrS were highly prevalent in both groups. According to genomic and phylogenetic analyses, blaCTX-M and blaOXA expressed lineage specificity to either humans or livestock, while qnrS and blaTEM displayed a shared lineage between humans and livestock. A qnrS1 mobilome comprising five genes, including two recombinases, a transposase, and a plasmid gene, is commonly found in human and chicken gut microbiomes. Humans and chickens showed the most similar gut resistomes to ß-lactams and quinolones. QnrS and blaTEM displayed especially strong co-occurrence between the guts of humans and livestock.

Intra-annual variation in microplastics in mussels (Mytilus galloprovincialis) inhabiting an urbanized bay of South Korea.

This study investigated the presence of microplastics (MPs) in mussels from an urbanized bay in Korea, focusing on intra-annual variation. The average MP concentration was 0.36 ± 0.14 n/g w.w. (1.24 ± 0.56 n/individual). MPs were detected throughout the year with minor monthly variation and no significant monthly changes. Although there was no correlation between MP concentration in mussel and seawater, a positive relationship was observed when normalizing MPs to mussel's condition index (except for July). Polypropylene, polyethylene and acrylate polymer were dominant MPs, with high-density polymers comprising 59 % of the total. Most MPs were fragments and particles <200 µm. This study indicates that strict time restrictions for mussel sampling may not be necessary to assess MP levels in this bay. Additionally, considering MPs in seawater, biological conditions of mussel may be essential for understanding variations in MP levels in mussels. Including small MPs (<200 µm) and high-density polymers in MP assessment is recommended.

The effects of environmental Microplastic on wharf roach (Ligia exotica): A Multi-Omics approach.

This is the first report to evaluate the potential effects of microplastics (MPs) on wild wharf roaches (Ligia exotica) in a shoreline habitant. L. exotica is an important plastic detritus consumer in coastal area. A survey was conducted from May to June in the years 2019 and 2020 in two South Korean nearshore sites: Nae-do (as MPs-uncontaminated) and Maemul-do (as MPs-contaminated). MPs (>20 µm in size) were detected highly in gastrointestinal tracts of the L. exotica from Maemul-do, at an average level of 50.56 particles/individual. They were detected in much lower levels in the L. exotica from Nae-do. at an average rate of 1.00 particles/individual. The polymer type and shape were dominated by expanded polystyrene (EPS, 93%) and fragment (99.9%) in L. exotica from Maemul-do. Especially, Hexabromocyclododecanes, brominated flame retardants added to EPS, have been detected highly in L. exotica from Maemul-do (630.86 ± 587.21 ng/g l. w.) than those of Nae-do (detection limit: 10.5 ng/g l. w). Genome-wide transcriptome profiling revealed altered expression of genes associated with fatty acid metabolic processes, the innate-immune response-activating system and vesicle cytoskeletal trafficking in L. exotica from Maemul-do. The activation of the p53 signaling pathway (which is related to proteasome, ER regulation and cell morphogenesis) is likely to be involved in the EPS-uptake of wild L. exotica. Four neurosteroids were also detected in head tissue, and cortisol and progesterone concentrations differed significantly in L. exotica from Maemul-do. Our findings also suggest that resident plastic detritus consumer might be a useful indicator organism for evaluating pollution and potential effects of environmental microplastics.

Spatial distribution and historical trend of microplastic pollution in sediments from enclosed bays of South Korea.

Seafloor sediments are an important sink for microplastics (MPs), and the vertical profile of MP accumulation in a sediment core represents historical pollution trends. In this study, MP (20-5000 µm) pollution in surface sediments of urban, aquaculture, and environmental preservation sites in South Korea was evaluated, and the historical trend was investigated using age-dated core sediments from the urban and aquaculture sites. The abundance of MPs ranked in the order of urban, aquaculture, and environmental preservation sites. Polymer types were more diverse at the urban site compared to other sites, and expanded polystyrene was dominant in the aquaculture site. An increase in MP pollution and polymer types was observed from bottom to top of cores, and historical trends of MP pollution reflect local influences. Our results indicate that the characteristics of MPs are determined by human activities, and MP pollution should be addressed according to the characteristics of each site.

Microplastic emission characteristics of stormwater runoff in an urban area: Intra-event variability and influencing factors.

Stormwater runoff is considered a major pathway for land-based microplastic transportation to aquatic environments. By applying time-weighted stormwater sampling at stormwater outlets from industrial and residential catchments, we investigated the emission characteristics and loads (number- and mass-based) of microplastics to aquatic environments through urban stormwater runoff during rainfall events. Microplastics were detected in stormwater runoff from industrial and residential areas in the concentration range of 68-568 n/L and 54-639 n/L, respectively. Polypropylene and polyethylene were found as major polymers accounting for around 60 % of total microplastics. The fragment was the dominant shape of microplastics, and the most common size class was 20-100 µm or 100-200 µm. The microplastic load emitted from industrial and residential areas were estimated to be 1.54-46.1 × 108 and 0.63-28.5 × 108 particles, respectively. The discharge characteristics of microplastics inter- and intra-event were affected by the land-use pattern and rainfall characteristics. The concentration of microplastics did not significantly differ between industrial and residential catchments, but the composition of polymer types reflected the land-use pattern. The microplastics in stormwater were more concentrated when the number of antecedent dry days (ADDs) was higher; the concentration of microplastics was generally peaked in the early stage of runoff and varied according to rainfall intensity during a rainfall event. The contamination level and load of microplastics were heavily affected by the total rainfall depth. Most microplastics were transported in the early stage of runoff (19-37 % of total runoff time), but the proportion of larger and heavier particles increased in the later period of runoff. The microplastic emission via stormwater runoff was significantly higher than that through the discharge of wastewater treatment plant effluent in the same area, implying that stormwater runoff is the dominant pathway for transporting microplastics to aquatic environments.

Discovery and Characterization of Polymyxin-Resistance Genes pmrE and pmrF from Sediment and Seawater Microbiome.

Polymyxins are the last-line antibiotics used to treat Gram-negative pathogens. Thus, the discovery and biochemical characterization of the resistance genes against polymyxins are urgently needed for diagnosis, treatment, and novel antibiotic design. Herein, we report novel polymyxin-resistance genes identified from sediment and seawater microbiome. Despite their low sequence identity against the known pmrE and pmrF, they show in vitro activities in UDP-glucose oxidation and l-Ara4N transfer to undecaprenyl phosphate, respectively, which occur as the part of lipid A modification that leads to polymyxin resistance. The expression of pmrE and pmrF also showed substantially high MICs in the presence of vanadate ions, indicating that they constitute polymyxin resistomes. IMPORTANCE Polymyxins are one of the last-resort antibiotics. Polymyxin resistance is a severe threat to combat multidrug-resistant pathogens. Thus, up-to-date identification and understanding of the related genes are crucial. Herein, we performed structure-guided sequence and activity analysis of five putative polymyxin-resistant metagenomes. Despite relatively low sequence identity to the previously reported polymyxin-resistance genes, at least four out of five discovered genes show reactivity essential for lipid A modification and polymyxin resistance, constituting antibiotic resistomes.

Plastic debris as a mobile source of additive chemicals in marine environments: In-situ evidence.

Plastic debris can act as a source of hazardous chemicals in the ocean, but the significance of its role in the environment is not yet known. To address this question, a comprehensive field study of highly contaminated and non-contaminated islands was conducted. Comparison of the plastic additive hexabromocyclododecanes and ubiquitous contaminants polychlorinated biphenyls in marine invertebrates showed that the load of stranded plastics plays a significant role in the bioaccumulation of plastic additives in the marine debris-contaminated island. Fugacity analysis indicates that net flow of hexabromocyclododecanes occurred from plastics to environmental reservoirs. Additionally, significantly higher levels of antioxidants, 2,4-di-tert-butylphenol and butylated hydroxytoluene, was found in the marine invertebrates inhabiting the marine debris-contaminated island than those inhabiting the marine debris-noncontaminated island, but ultraviolet stabilizers did not show the regional difference. This study provides the first field evidence that the movement of plastic debris in the ocean drives the dispersal of plastic additives to pristine waters.

Deciphering Resistome in Patients With Chronic Obstructive Pulmonary Diseases and Clostridioides difficile Infections.

Antibiotics alter the gut microbiome and cause dysbiosis leading to antibiotic-resistant organisms. Different patterns of antibiotic administration cause a difference in bacterial composition and resistome in the human gut. We comprehensively investigated the association between the distribution of antibiotic resistance genes (ARGs), bacterial composition, and antibiotic treatments in patients with chronic obstructive pulmonary diseases (COPD) and Clostridioides difficile infections (CDI) who had chronic or acute intermittent use of antibiotics and compared them with healthy individuals. We analyzed the gut microbiomes of 61 healthy individuals, 16 patients with COPD, and 26 patients with CDI. The COPD patients were antibiotic-free before stool collection for a median of 40 days (Q1: 9.5; Q3: 60 days), while the CDI patients were antibiotic-free for 0 days (Q1: 0; Q3: 0.3). The intra-group beta diversity measured by the median Bray-Curtis index was the lowest for the healthy individuals (0.55), followed by the COPD (0.69) and CDI groups (0.72). The inter-group beta diversity was the highest among the healthy and CDI groups (median index = 0.89). The abundance of ARGs measured by the number of reads per kilobase per million reads (RPKM) was 684.2; 1,215.2; and 2,025.1 for the healthy, COPD, and CDI groups. It was negatively correlated with the alpha diversity of bacterial composition. For the prevalent ARG classes, healthy individuals had the lowest diversity and abundance of aminoglycoside, ß-lactam, and macrolide-lincosamide-streptogramin (MLS) resistance genes, followed by the COPD and CDI groups. The abundances of Enterococcus and Escherichia species were positively correlated with ARG abundance and the days of antibiotic treatment, while Bifidobacterium and Ruminococcus showed negative correlations for the same. In addition, we analyzed the mobilome patterns of aminoglycoside and ß-lactam resistance gene carriers using metagenomic sequencing data. In conclusion, the ARGs were significantly enhanced in the CDI and COPD groups than in healthy individuals. In particular, aminoglycoside and ß-lactam resistance genes were more abundant in the CDI and COPD groups, but the dominant mobile genetic elements that enable the transfer of such genes showed similar prevalence patterns among the groups.

Spatial distribution and temporal trends of classical and emerging persistent organic pollutants (POPs) in black-tailed gull (Larus crassirostris) eggs from Korea.

This study monitored the spatiotemporal trends of persistent organic pollutants (POPs) contamination along the Korean coasts using eggs of the black-tailed gull, a resident bird that occupies a high trophic position in the marine food web. Black-tailed gull eggs were collected from three breeding islands located in the western (Seoman-do), southern (Hong-do), and eastern (Dok-do) seas of Korea during 2015-2019, and egg contents were analyzed for classical and emerging POPs. Among the target analytes, levels of emerging POPs such as brominated flame retardants (BFRs) and perfluoroalkyl acids (PFAAs) were significantly higher in eggs from Seoman-do than other islands. Global positioning system tracking data show that seagulls from Seoman-do traveled frequently to two neighboring major cities (Incheon and Seoul), indicating that the accumulation of BFRs and PFAAs in bird eggs is directly affected by the pollution characteristics of urban areas. Overall, the ratios of PFAA and BFR to the total POPs in eggs from the islands increased over time, while the proportion of classical POPs decreased. A shift from classical POPs to BFRs and PFAAs in seagull eggs was identified. Interestingly, perfluorooctanoic acid (PFOA), which exhibits limited bioaccumulation, was detected at higher levels in eggs from Seoman-do, indicating widespread use of PFOA and maternal transfer to seabird eggs. Continuous monitoring of PFAAs in marine environments of Korea is needed. This study demonstrates that monitoring of seabird eggs is effective for detecting spatial and temporal trends of POPs in the marine environment, and provides insights into emerging POPs such as PFAAs.

What type of plastic do sea turtles in Korean waters mainly ingest? Quantity, shape, color, size, polymer composition, and original usage.

Globally, sea turtles are at high risk of ingesting plastic. However, research on plastic ingestion by sea turtles in East Asia is scant, and no quantitative or qualitative investigation has been conducted in Korean waters. This study examined the plastic ingestion of sea turtles stranded, floating, or incidentally captured in Korean waters between 2012 and 2018. The quantity, shape, color, size, polymer type, and original usage of plastic debris (>1 mm) ingested by sea turtles were analyzed after being sorted from the gastrointestinal tracts of 34 turtles (21 loggerheads (Caretta caretta), 9 green turtles (Chelonia mydas), 2 leatherbacks (Dermochelys coriacea), and 2 olive ridleys (Lepidochelys olivacea)). The ingestion frequencies of greens, loggerheads, olive ridleys, and leatherbacks were 100%, 81%, 50%, and 50%, respectively. The mean amount of plastic ingested was 108 ± 253 mg/kg (38 ± 61 n/ind.). The ingested debris tended to be films and fibers (>80%), light in color (white and transparent; 65%), and light polymers (polyethylene, polypropylene, polypropylene [poly (ethylene:propylene)], expanded polystyrene; 93%). The original uses were identified for 187 pieces; single-use plastics (e.g., plastic bag and packaging) and fishing and aquaculture items (e.g., twine and net) were found to dominate. Green turtles (264 ± 433 mg/kg) ingested significantly higher amounts of plastic than loggerheads (72.8 ± 156 mg/kg). Green turtles ingested mostly fibers (51%), such as rope, twine, and net, while loggerheads ingested largely films (61%), such as plastic bags and packaging. Interspecies differences in quantities and shapes of ingested debris may be related to their distinct feeding habits and geographical range of movement. The present study demonstrates that sea turtles foraging in Korean waters are considerably affected by marine plastic debris, and indicates that proper waste management of single-use plastics and fishing gears is urgently needed to mitigate the damage that plastic debris causes to marine wildlife.

High fecal carriage of blaCTX-M, blaCMY-2, and plasmid-mediated quinolone resistance genes among healthy Korean people in a metagenomic analysis.

To characterize the carriage of antibiotic resistance genes (ARGs) in the gut microbiome of healthy individuals. Fecal carriage of ARGs was investigated in 61 healthy individuals aged 30 to 59 years through whole metagenome sequencing of the gut microbiome and a targeted metagenomic approach. The number of ARGs in the gut microbiome was counted and normalized per million predicted genes (GPM). In the Korean population, the resistome ranged from 49.7 to 292.5 GPM (median 89.7). Based on the abundance of ARGs, the subjects were categorised into high (> 120 GPM), middle (60‒120 GPM), and low (< 60 GPM) ARG groups. Individuals in the high ARG group tended to visit hospitals more often (P = 0.065), particularly for upper respiratory tract infections (P = 0.066), and carried more blaCTX-M (P = 0.008). The targeted metagenome approach for bla and plasmid-mediated quinolone resistance (PMQR) genes revealed a high fecal carriage rate; 23% or 13.1% of the subjects carried blaCTX-M or blaCMY-2, respectively. Regarding PMQR genes, 59% of the subjects carried PMQR, and 83% of them harboured 2‒4 PMQR genes (qnrB 44.3%, qnrS 47.5% etc.). The presence of blaCTX-M correlated with ARG abundance in the gut resistome, whereas PMQR genes were irrelevant to other ARGs (P = 0.176). Fecal carriage of blaCTX-M and PMQR genes was broad and multiplexed among healthy individuals.

Relative importance of aqueous leachate versus particle ingestion as uptake routes for microplastic additives (hexabromocyclododecane) to mussels.

Microplastic pollution is emerging as a global environmental issue, and its potential for transferring hazardous chemicals to aquatic organisms is gaining attention. Studies have investigated the transfer of chemicals, mainly sorbed chemicals, through ingestion of microplastics by organisms, but limited information is available regarding chemical additives and uptake via the aqueous route through plastic leaching. In this study, we compared two bioaccumulation pathways of the additive hexabromocyclododecane (HBCD) by exposing mussels (Mytilus galloprovincialis) to two different sizes of expanded polystyrene (EPS): inedible size (4.2-5.5 mm) for leachate uptake and edible size (20-770 µm) for particle ingestion and leachate uptake. Over 10 days, the HBCD concentration increased significantly in mussels in the EPS exposure groups, indicating that EPS microplastic acts as a source of HBCD to mussels. The concentration and isomeric profiles of HBCD in mussels show that uptake through the aqueous phase is a more significant pathway for bioaccumulation of HBCD from EPS to mussels than particle ingestion. HBCD levels measured in EPS, leachate and exposed mussels from this study are environmentally relevant concentration. The fate and effects of chemical additives leached from plastic debris in ecosystem requires further investigation, as it may affect numerous environments and organisms through the aqueous phase.

Ecological risk assessment of microplastics in coastal, shelf, and deep sea waters with a consideration of environmentally relevant size and shape.

This study assessed the ecological risk posed by microplastics in surface and subsurface seawaters in coastal, continental shelf, and deep-sea areas of South Korea. The target microplastics for risk assessment were specified as only non-spherical type microplastics in the size range 20-300 µm, because this type was predominantly observed in our study areas, and adverse biological effects have previously been reported. Exposure data for non-spherical microplastics were obtained from a previous study or were measured for microplastics of sizes down to 20 µm. A predicted no-effect concentration (PNEC) of 12 particles/L was derived by employing a species sensitivity distribution approach. Then the results were compared to the in situ observed concentrations at each site. The detected microplastic concentrations did not exceed the derived PNEC, i.e., the current pollution levels of fragment and fiber microplastics in the size range 20-300 µm would not pose a significant threat to the marine ecosystem in South Korea. However, predictions are that microplastic pollution will increase to 50-fold by 2100 at the current rates, and in this scenario, the microplastic concentration is expected to far exceed the derived PNEC values for marine ecosystems. It is therefore urgent to take precautionary actions to prevent a further increase in microplastic concentrations in these environments.

Nationwide monitoring of microplastics in bivalves from the coastal environment of Korea.

Bivalves are useful bioindicators of microplastic contamination in the marine environment for several reasons, such as extensive filter feeding activity, broad geographical distribution, and limited movement capability. This study conducted a nationwide monitoring of microplastic pollution along the Korean coasts using filter-feeding bivalves (including oyster, mussel, and Manila clam) as bioindicators to identify the national contamination level and characteristics of microplastics. Seawater sample was collected from the same sampling stations of oyster and mussel for comparison. Microplastics were widely distributed in both coastal bivalves and waters with mean concentrations of 0.33 ± 0.23 n/g (1.21 ± 0.68 n/individual) in oyster/mussel, 0.43 ± 0.32 n/g (2.19 ± 1.20 n/individual) in Manila clam, and 1400 ± 560 n/m3 in seawater. Despite the lack of significant relationship in the abundance of microplastics, their dominant features such as size, shape, color and polymer type were similar between bivalves and seawater. Fragments (69% for oyster/mussel, 72% for Manila clam, and 77% for seawater), particles smaller than 300 µm (96% for oyster/mussel, 83% for Manila clam, and 84% for seawater) and colorless (79% for oyster/mussel, 85% for Manila clam, 75% for seawater) were the dominant shape, size and color, respectively. The major polymer types were polypropylene, polyethylene, and polyester. The microplastic level in bivalves was relatively high in urbanized areas with a wide diversity of polymer types compared with those in non-urbanized areas, and the proportion of polystyrene in the Korean samples was abundant compared with other regions due to wide use of polystyrene products in Korea. Our result suggests that microplastic contamination is widespread in the Korean coastal environment, and bivalves can reflect the microplastic pollution characteristics of the surrounding waters where they live.

Barriers to translational research in Sjögren's syndrome with childhood onset: challenges of recognising and diagnosing an orphan rheumatic disease.

Sjögren's syndrome was considered for many years a disease of adulthood, characterised by immune infiltration of exocrine glands, leading to dryness (eg, dry mouth and eyes), which is a cardinal symptom. As of the last 20 years, it became apparent that although the disease is very rare in children, its clinical presentation differs from that of adults, posing substantial challenges to the recognition, diagnosis, and classification of patients with childhood-onset Sjögren's syndrome. This Viewpoint explores comparative classification criteria for children (not validated) and adults with Sjögren's syndrome, as well as differences in the clinical presentation of childhood-onset versus adult-onset Sjögren's syndrome, offering ideas about how we can improve the diagnosis of Sjögren's syndrome in children. A review of the role of medical history and clinical assessment, serology, glandular function assessment, and imaging, as well as salivary and lachrymal gland biopsy in the diagnosis of children with Sjögren's syndrome is included. Additionally, we provide suggestions about further research and registry data collection that is required to address the unmet needs of these patients.

Quantitative characterization of Clostridioides difficile population in the gut microbiome of patients with C. difficile infection and their association with clinical factors.

Objective was to analyse bacterial composition and abundance of Clostridioides difficile in gut microbiome of patients with C. difficile infection (CDI) in association with clinical characteristics. Whole metagenome sequencing of gut microbiome of 26 CDI patients was performed, and the relative abundance of C. difficile and its toxin genes was measured. Clinical characteristics of the patients were obtained through medical records. A strong correlation between the abundance of C. difficile and tcdB genes in CDI patients was found. The relative abundance of C. difficile in the gut microbiome ranged from undetectable to 2.8% (median 0.089). Patients with fever exhibited low abundance of C. difficile in their gut, and patients with fewer C. difficile organisms required long-term anti-CDI treatment. Abundance of Bifidobacterium and Bacteroides negatively correlated with that of C. difficile at the genus level. CDI patients were clustered using the bacterial composition of the gut: one with high population of Enterococcus (cluster 1, n = 12) and another of Bacteroides or Lactobacillus (cluster 2, n = 14). Cluster1 showed significantly lower bacterial diversity and clinical cure at the end of treatment. Additionally, patients with CDI exhibited increased ARGs; notably, blaTEM, blaSHV and blaCTX-M were enriched. C. difficile existed in variable proportion of the gut microbiome in CDI patients. CDI patients with Enterococcus-rich microbiome in the gut had lower bacterial diversity and poorer clinical cure.

Antibiotic resistomes discovered in the gut microbiomes of Korean swine and cattle.

BACKGROUND: Antibiotics administered to farm animals have led to increasing prevalence of resistance genes in different microbiomes and environments. While antibiotic treatments help cure infectious diseases in farm animals, the possibility of spreading antibiotic resistance genes into the environment and human microbiomes raises significant concerns. Through long-term evolution, antibiotic resistance genes have mutated, thereby complicating the resistance problems. RESULTS: In this study, we performed deep sequencing of the gut microbiomes of 36 swine and 41 cattle in Korean farms, and metagenomic analysis to understand the diversity and prevalence of antibiotic resistance genes. We found that aminoglycoside, ß-lactam, lincosamide, streptogramin, and tetracycline were the prevalent resistance determinants in both swine and cattle. Tetracycline resistance was abundant and prevalent in cattle and swine. Specifically, tetQ, tetW, tetO, tet32, and tet44 were the 5 most abundant and prevalent tetracycline resistance genes. Their prevalence was almost 100% in swine and cattle. While tetQ was similarly abundant in both swine and cattle, tetW was more abundant in swine than in cattle. Aminoglycoside was the second highest abundant resistance determinant in swine, but not in cattle. In particular, ANT(6) and APH(3'') were the dominant resistance gene families in swine. ß-lactam was also an abundant resistance determinant in both swine and cattle. Cfx was the major contributing gene family conferring resistance against ß-lactams. CONCLUSIONS: Antibiotic resistome was more pervasive in swine than in cattle. Specifically, prevalent antibiotic resistance genes (prevalence >50%) were found more in swine than in cattle. Genomic investigation of specific resistance genes from the gut microbiomes of swine and cattle in this study should provide opportunities to better understand the exchange of antibiotic resistance genes in farm animals.

A close relationship between microplastic contamination and coastal area use pattern.

Human activity is thought to affect the abundance and contamination characteristics of microplastics (MPs) in the environment, which may in turn affect aquatic species. However, few studies have examined the impact of coastal area use pattern on characteristics of MPs in coastal regions. In this study, we investigated MP contamination of abiotic matrices (seawater and sediment) and biotic matrices (bivalves and polychaetes) in three coastal regions characterized by different types of human activity, covering urban, aquafarm, and rural areas. MP abundance was higher in sediment from the urban site than in that from the rural site, but similar to that from the aquafarm site. In the abiotic matrices, different MP polymer compositions were observed among the three sites. Diverse polymers were found in marine matrices from the urban site, implying diverse MP sources in highly populated and industrialized areas. Polystyrene was more abundant in the aquafarm site, reflecting the wide use of expanded polystyrene aquaculture buoys. Polypropylene was more abundant at the rural site, probably due to the use of polypropylene ropes and nets in fishing activity. MP accumulation profiles in marine invertebrates showed trends similar to those exhibited by abiotic matrices, reflecting coastal area use patterns. These results indicate that marine MPs are generated from both land- and marine-based sources, and that the abiotic and biotic marine matrices reflect the MP characteristics.

Abundance and characteristics of microplastics in market bivalves from South Korea.

Microplastic contamination in marine organisms is a growing environmental issue with implications for seafood safety. Among marine organisms, shellfish are considered to be an important route of human exposure to microplastics because they filter a large volume of seawater while feeding and, thus, accumulate microplastics from seawater; furthermore, they are consumed whole, without gut removal. In this study, a market survey was carried out to understand microplastic contamination in domestic bivalves sold in fishery markets in three major cities of South Korea. Four popular bivalve species, oyster (Crassostrea gigas), mussel (Mytilus edulis), Manila clam (Tapes philippinarum) and scallop (Patinopecten yessoensis), were selected as monitoring species, which together account for 79-84% of total shellfish consumption in Korea. The mean concentration of microplastics in these four species was 0.15 ±â€¯0.20 n/g and 0.97 ±â€¯0.74 n/individual. Fragments and particles smaller than 300 µm were dominant shape and size, accounting for 76% and 65% of total microplastics, respectively. Polyethylene (PE), polypropylene (PP), polystyrene (PS), and polyester were the major polymer types. Interestingly, differing polymer compositions were observed according to the culture methods and habitat characteristics of each species. PS was found in high proportions in oysters and mussels cultured in the upper layer of the water column, while the proportions decreased and those of polyester increased in Manila clams and scallops that were cultured in intertidal sediments or the middle and bottom layers of the water column. The annual dietary intake of microplastics by the Korean population via shellfish consumption was estimated as 212 n/person·year. Our results suggested that microplastic pollution is widespread in commercial bivalves and we recommend a systematic and integrative market-basket survey to clarify the current status of human exposure to microplastics.

Diverse Distribution of Resistomes in the Human and Environmental Microbiomes.

The routine therapeutic use of antibiotics has caused resistance genes to be disseminated across microbial populations. In particular, bacterial strains having antibiotic resistance genes are frequently observed in the human microbiome. Moreover, multidrug-resistant pathogens are now widely spread, threatening public health. Such genes are transferred and spread among bacteria even in different environments. Advances in high throughput sequencing technology and computational algorithms have accelerated investigation into antibiotic resistance genes of bacteria. Such studies have revealed that the antibiotic resistance genes are located close to the mobility-associated genes, which promotes their dissemination. An increasing level of information on genomic sequences of resistome should expedite research on drug-resistance in our body and environment, thereby contributing to the development of public health policy. In this review, the high prevalence of antibiotic resistance genes and their exchange in the human and environmental microbiome is discussed with respect to the genomic contents. The relationships among diverse resistomes, related bacterial species, and the antibiotics are reviewed. In addition, recent advances in bioinformatics approaches to investigate such relationships are discussed.