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1.
Proc Natl Acad Sci U S A ; 98(20): 11218-23, 2001 Sep 25.
Article in English | MEDLINE | ID: mdl-11562470

ABSTRACT

Mitochondrial protein kinases (mPKs) are molecular switches that down-regulate the oxidation of branched-chain alpha-ketoacids and pyruvate. Elevated levels of these metabolites are implicated in disease states such as insulin-resistant Type II diabetes, branched-chain ketoaciduria, and primary lactic acidosis. We report a three-dimensional structure of a member of the mPK family, rat branched-chain alpha-ketoacid dehydrogenase kinase (BCK). BCK features a characteristic nucleotide-binding domain and a four-helix bundle domain. These two domains are reminiscent of modules found in protein histidine kinases (PHKs), which are involved in two-component signal transduction systems. Unlike PHKs, BCK dimerizes through direct interaction of two opposing nucleotide-binding domains. Nucleotide binding to BCK is uniquely mediated by both potassium and magnesium. Binding of ATP induces disorder-order transitions in a loop region at the nucleotide-binding site. These structural changes lead to the formation of a quadruple aromatic stack in the interface between the nucleotide-binding domain and the four-helix bundle domain, where they induce a movement of the top portion of two helices. Phosphotransfer induces further ordering of the loop region, effectively trapping the reaction product ADP, which explains product inhibition in mPKs. The BCK structure is a prototype for all mPKs and will provide a framework for structure-assisted inhibitor design for this family of kinases.


Subject(s)
Adenosine Diphosphate/metabolism , Adenosine Triphosphate/analogs & derivatives , Adenosine Triphosphate/metabolism , Mitochondria/enzymology , Protein Kinases/chemistry , Protein Kinases/metabolism , Amino Acid Sequence , Animals , Binding Sites , Cloning, Molecular , Crystallography, X-Ray , Diabetes Mellitus, Type 2/enzymology , Escherichia coli , Histidine Kinase , Humans , Models, Molecular , Molecular Sequence Data , Protein Structure, Secondary , Rats , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Homology, Amino Acid , Signal Transduction
2.
J Cell Biochem ; 82(2): 277-89, 2001.
Article in English | MEDLINE | ID: mdl-11527153

ABSTRACT

Platelet plasminogen activator inhibitor I (PAI-1), a trace alpha-granule protein, is a key physiological regulator of fibrinolysis. Because information on the packaging of PAI-1 into alpha-granules during megakaryocytopoiesis may reveal novel approaches for controlling hemostasis, this study investigated basal, plasmid-mediated, and alphavirus-mediated PAI-1 packaging into alpha-granules-like structures in the megakaryocytic cell line MEG-01. Differentiation of MEG-01 cells with phorbol myristate acetate (PMA) was observed to result in a four-fold increase in both secreted and cell-associated PAI-1 antigen over a four day period. Subcellular fractionation of PMA-treated MEG-01 cells on 45% self-forming Percoll gradients was employed to separate low density membrane and Golgi-rich fractions from a high density granule-containing region. A subsequent 30-60% pre-formed Percoll gradient was employed to remove contaminating lysosomes from the PAI-1/glycoprotein IIbIIIa-containing granules. Electron microscopy showed that these MEG-01 granules share a similar size distribution (350-600 nm) and morphology to platelet alpha-granules. PAI-1 (40 ng/mg protein) in isolated MEG-01 storage granules was approximately 10% of the levels present in isolated platelet alpha-granules. To elevate PAI-1 production/storage, two expression systems were investigated. Experiments with plasmids encoding PAI-1 and beta-galactosidase resulted in low transfection efficiency (0.001%). In contrast, Semliki Forest virus (SFV)-mediated gene transfer increased cellular PAI-1 by 31-fold (1,200 ng/10(6) cells at 10 MOI) in comparison to mock-infected cells. Pulse-chase experiments demonstrated that SFV/PAI-1 mediated gene expression could enhance PAI-1 storage 6-9-fold, reaching levels present within platelets. To document the ability of PAI-1 to be stored in a rapidly releasable form in MEG-01 cells, we isolated platelet-like particles from the media conditioned by the cells and examined secretagogue-induced release of PAI-1. Particles from SFV/PAI-1 infected cells display a 5-fold enhanced secretion of PAI-1 following treatment with ADP in comparison to particles incubated in the absence of secretagogue. These results suggest that SFV mediated gene expression in MEG-01 cells provides a useful framework for analyzing the production and storage of alpha-granule proteins.


Subject(s)
Cytoplasmic Granules/metabolism , Gene Expression Regulation, Viral , Genetic Vectors/genetics , Megakaryocytes/virology , Plasminogen Activator Inhibitor 1/metabolism , Semliki forest virus/genetics , Adenosine Diphosphate/pharmacology , Animals , Biomarkers , Blood Platelets/drug effects , Blood Platelets/metabolism , Cell Differentiation/drug effects , Cell Line , Cricetinae , Genetic Vectors/physiology , Glucuronidase/analysis , Kidney , Megakaryocytes/drug effects , Megakaryocytes/metabolism , Megakaryocytes/ultrastructure , Mesocricetus , Plasminogen Activator Inhibitor 1/genetics , Platelet Activation/drug effects , Platelet Glycoprotein GPIIb-IIIa Complex/analysis , Protein Disulfide-Isomerases/analysis , Recombinant Fusion Proteins/biosynthesis , Semliki forest virus/physiology , Subcellular Fractions/metabolism , Tetradecanoylphorbol Acetate/pharmacology , Transfection , beta-Galactosidase/biosynthesis , von Willebrand Factor/analysis
3.
Thromb Haemost ; 85(6): 1079-85, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11434688

ABSTRACT

Platelets release large quantities of plasminogen activator inhibitor 1 (PAI-1) that plays an important role in maintaining the integrity of fibrin-rich thrombi. In addition, tissue-type plasminogen activator (t-PA), a key physiological regulator of fibrinolysis, has been detected in platelet alpha-granules at low abundance. This information raises the possibility of enhancing t-PA expression in megakaryocytes as a means to enhance the fibrinolytic properties of platelet alpha-granules and target PAs directly to fibrin clots. This study was initiated to investigate adenovirus (Ad)-mediated expression and packaging of t-PA into alpha-granules-like structures in the megakaryocytic cell line MEG-01. Ad/t-PA infection of phorbol myristate acetate (PMA)-differentiated MEG-01 cells increased cellular t-PA levels by 120 fold (1580 +/- 130 ng/10(6) cells at 5 MOI) in comparison to non-or Ad/beta-gal-infected cells. Fluorescence-activated cell sorter (FACS) analysis indicates that Ad/t-PA-infected cells yielded a homogenous shift in the t-PA staining profile with a 4-fold shift in mean fluorescence in comparison to non- or Ad/beta-gal-infected cells. For the isolation of alpha-granule-like structures, MEG-01 cell homogenates were fractionated by differential centrifugation and two consecutive Percoll density gradients. Fibrin autography of storage granules revealed a prominent lytic zone at Mr 66 kD comigrating with free t-PA. Quantitative analyses indicate that a 16-fold elevation in t-PA antigen within storage granules in comparison to non- or Ad/beta-gal-infected cells. To document the ability of t-PA to be stored in a rapidly-releasable form in these cells, we isolated platelet-like particles from the supernatant of differentiated cells and determined that particles from Ad/t-PA-infected cells display a 4-8 fold enhanced secretion of t-PA following treatment with the clasical secretagogue calcium ionphore 23187, ADP, or thrombin. Confocal immunofluoresence microscopy analysis indicates that Ad/t-PA mediated productive expression of t-PA in murine megakaryocytes. These data provide support for the concept of increasing the expression of t-PA in megakaryocytes as a means to alter the hemostatic properties of alpha-granules.


Subject(s)
Adenoviridae/genetics , Fibrinolytic Agents/metabolism , Megakaryocytes/metabolism , Tissue Plasminogen Activator/metabolism , Animals , Bone Marrow Cells/cytology , Cell Differentiation/drug effects , Cytoplasmic Granules/metabolism , Megakaryocytes/ultrastructure , Mice , Microscopy, Fluorescence , Plasminogen Activator Inhibitor 1/metabolism , Platelet Glycoprotein GPIIb-IIIa Complex/analysis , Tetradecanoylphorbol Acetate/pharmacology , Tissue Plasminogen Activator/drug effects , Tissue Plasminogen Activator/genetics , Transduction, Genetic
4.
J Biol Chem ; 276(39): 36550-6, 2001 Sep 28.
Article in English | MEDLINE | ID: mdl-11448970

ABSTRACT

Maple syrup urine disease (MSUD) is a metabolic disorder associated with often-fatal ketoacidosis, neurological derangement, and mental retardation. In this study, we identify and characterize two novel type IB MSUD mutations in Israeli patients, which affect the E1beta subunit in the decarboxylase (E1) component of the branched-chain alpha-ketoacid dehydrogenase complex. The recombinant mutant E1 carrying the prevalent S289L-beta (TCG --> TTG) mutation in the Druze kindred exists as a stable inactive alphabeta heterodimer. Based on the human E1 structure, the S289L-beta mutation disrupts the interactions between Ser-289-beta and Glu-290-beta', and between Arg-309-beta and Glu-290-beta', which are essential for native alpha(2)beta(2) heterotetrameric assembly. The R133P-beta (CGG --> CCG) mutation, on the other hand, is inefficiently expressed in Escherichia coli as heterotetramers in a temperature-dependent manner. The R133P-beta mutant E1 exhibits significant residual activity but is markedly less stable than the wild-type, as measured by thermal inactivation and free energy change of denaturation. The R133P-beta substitution abrogates the coordination of Arg-133-beta to Ala-95-beta, Glu-96-beta, and Ile-97-beta, which is important for strand-strand interactions and K(+) ion binding in the beta subunit. These findings provide new insights into folding and assembly of human E1 and will facilitate DNA-based diagnosis for MSUD in the Israeli population.


Subject(s)
Ketone Oxidoreductases/chemistry , Ketone Oxidoreductases/genetics , Maple Syrup Urine Disease/genetics , Multienzyme Complexes/chemistry , Multienzyme Complexes/genetics , Mutation , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Alleles , Arginine/chemistry , Blotting, Western , Cell Line , Child , Child, Preschool , Chromatography, Gel , Dimerization , Dose-Response Relationship, Drug , Escherichia coli/metabolism , Family Health , Female , Glutamic Acid/chemistry , Guanidine/pharmacology , Heterozygote , Homozygote , Humans , Israel , Kinetics , Male , Models, Molecular , Plasmids/metabolism , Protein Binding , Sequence Analysis, DNA , Serine/chemistry , Temperature , Time Factors
5.
Hum Gene Ther ; 12(4): 439-45, 2001 Mar 01.
Article in English | MEDLINE | ID: mdl-11242535

ABSTRACT

Gene therapy utilizing leukocytes is an unexplored therapeutic strategy for targeting tissue-type plasminogen activator (t-PA) to fibrin and sites of inflammation. In this study, five cationic lipids were observed to enhance the adenovirus (Ad)-mediated expression of t-PA in human peripheral blood mononuclear cells (PBMCs) in a dose-dependent manner between 1000 and 15,000 lipid molecules per Ad particle (efficiency:LipofectAMINE > GenePORTER > Effectene > SuperFect > DMRIE-C). PBMCs treated with Ad/t-PA * LipofectAMINE complexes displayed elevated t-PA expression over a 4-day period and the t-PA-expressing cells facilitated the lysis of plasma clots in vitro. Functional and immunologic assays revealed that the Ad * LipofectAMINE infection protocol did not affect monocyte adhesion in vitro or elevate the expression of procoagulant activity, interleukin 8, or tumor necrosis factor alpha. The potential of this system was documented with an in vivo rat model system that involved the injection of lipopolysaccharide into the peritoneal cavity to induce an inflammatory response. Infusion of Ad/t-PA-infected rat PBMCs into the vasculature of lipopolysaccharide-treated animals was found to increase local fibrinolytic activity by 4-fold. These data provide a framework for utilizing adenovirus to transfer genes into PBMCs.


Subject(s)
Adenoviridae/genetics , Fibrinolysis/physiology , Gene Transfer Techniques , Leukocytes, Mononuclear/metabolism , Lipopolysaccharides/pharmacology , Tissue Plasminogen Activator/genetics , Animals , Dose-Response Relationship, Drug , Enzyme-Linked Immunosorbent Assay , Gene Expression , Genetic Vectors/genetics , Humans , Interleukin-8/metabolism , Leukocytes, Mononuclear/drug effects , Monocytes/metabolism , Rats , Rats, Wistar , Tissue Plasminogen Activator/biosynthesis , Tumor Necrosis Factor-alpha/metabolism
6.
J Biol Chem ; 276(6): 4168-74, 2001 Feb 09.
Article in English | MEDLINE | ID: mdl-11069910

ABSTRACT

The human mitochondrial branched-chain alpha-ketoacid decarboxylase/dehydrogenase (BCKD) is a heterotetrameric (alpha(2)beta(2)) thiamine diphosphate (TDP)-dependent enzyme. The recently solved human BCKD structure at 2.7 A showed that the two TDP-binding pockets are located at the interfaces between alpha and beta' subunits and between alpha' and beta subunits. In the present study, we show that the E76A-beta' mutation results in complete inactivation of BCKD. The result supports the catalytic role of the invariant Glu-76-beta' residue in increasing basicity of the N-4' amino group during the proton abstraction from the C-2 atom on the thiazolium ring. A substitution of His-146-beta' with Ala also renders the enzyme completely inactive. The data are consistent with binding of the alpha-ketoacid substrate by this residue based on the Pseudomonas BCKD structure. Alterations in Asn-222-alpha, Tyr-224-alpha, or Glu-193-alpha, which coordinates to the Mg(2+) ion, result in an inactive enzyme (E193A-alpha) or a mutant BCKD with markedly higher K(m) for TDP and a reduced level of the bound cofactor (Y224A-alpha and N222S-alpha). Arg-114-alpha, Arg-220-alpha, and His-291-alpha interact with TDP by directly binding to phosphate oxygens of the cofactor. We show that natural mutations of these residues in maple syrup urine disease (MSUD) patients (R114W-alpha and R220W-alpha) or site-directed mutagenesis (H291A-alpha) also result in an inactive or partially active enzyme, respectively. Another MSUD mutation (T166M-alpha), which affects one of the residues that coordinate to the K(+) ion on the alpha subunit, also causes inactivation of the enzyme and an attenuated ability to bind TDP. In addition, fluorescence measurements establish that Trp-136-beta in human BCKD is the residue quenched by TDP binding. Thus, our results define the functional roles of key amino acid residues in human BCKD and provide a structural basis for MSUD.


Subject(s)
Ketone Oxidoreductases/metabolism , Mitochondria/enzymology , Multienzyme Complexes/metabolism , Potassium/metabolism , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Binding Sites , Catalytic Domain , Humans , Ketone Oxidoreductases/chemistry , Ketone Oxidoreductases/genetics , Models, Molecular , Multienzyme Complexes/chemistry , Multienzyme Complexes/genetics , Mutagenesis , Oxygen/metabolism , Protein Conformation
10.
Am J Hum Genet ; 67(3): 750-4, 2000 Sep.
Article in English | MEDLINE | ID: mdl-10915611

ABSTRACT

A child with maple syrup urine disease type 2 (MSUD2) was found to be homozygous for a 10-bp MSUD2-gene deletion on chromosome 1. Both purported parents were tested, and neither carries the gene deletion. Polymorphic simple-sequence repeat analyses at 15 loci on chromosome 1 and at 16 loci on other chromosomes confirmed parentage and revealed that a de novo mutation prior to maternal meiosis I, followed by nondisjunction in maternal meiosis II, resulted in an oocyte with two copies of the de novo mutant allele. Fertilization by a sperm that did not carry a paternal chromosome 1 or subsequent mitotic loss of the paternal chromosome 1 resulted in the propositus inheriting two mutant MSUD2 alleles on two maternal number 1 chromosomes.


Subject(s)
Chromosomes, Human, Pair 1/genetics , Genes, Recessive/genetics , Maple Syrup Urine Disease/genetics , Meiosis/genetics , Mutation/genetics , Alleles , Child , Crossing Over, Genetic/genetics , Female , Gene Deletion , Genotype , Humans , Male , Mitosis/genetics , Models, Genetic , Nondisjunction, Genetic , Nuclear Family , Oocytes/metabolism , Polymorphism, Genetic/genetics , Spermatozoa/metabolism
11.
J Biol Chem ; 275(39): 30512-9, 2000 Sep 29.
Article in English | MEDLINE | ID: mdl-10903321

ABSTRACT

We showed previously that the rat branched-chain alpha-ketoacid dehydrogenase (BCKD) kinase is capable of autophosphorylation. However, despite its sequence similarity to bacterial histidine protein kinases, BCKD kinase does not function as a histidine protein kinase. In the present study, we report that the rat BCKD kinase exists as a homotetramer of M(r) = 185,000, based on results of gel filtration and dynamic light scattering. This is in contrast to the related mammalian pyruvate dehydrogenase kinase isozymes that occur as homodimers. The tetrameric assembly of BCKD kinase was confirmed by the presence of four 5'-adenylyl-imidodiphosphate-binding sites (K(D) = 4.1 x 10(-6)m) per molecule of the kinase. Incubation of the BCKD kinase with increasing concentrations of urea resulted in dissociation of the tetramer to dimers and eventually to monomers as separated on a sucrose density gradient. Both tetramers and dimers, but not the monomer, maintained the conformation capable of binding ATP and undergoing autophosphorylation. BCKD kinase depends on a fully lipoylated transacylase for maximal activity, but the interaction between the kinase and the transacylase is impeded in the presence of high salt concentrations. Alterations of conserved residues in the ATP-binding domain led to a marked reduction or complete loss in the catalytic efficiency of the BCKD kinase. The results indicate that BCKD kinase, similar to pyruvate dehydrogenase kinase isozymes, belongs to the superfamily of ATPase/kinase.


Subject(s)
Adenosine Triphosphatases/metabolism , Adenosine Triphosphate/metabolism , Protein Kinases/metabolism , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Acyltransferases/metabolism , Adenosine Triphosphatases/chemistry , Adenosine Triphosphatases/genetics , Amino Acid Sequence , Animals , Binding Sites , Conserved Sequence , Dihydrolipoamide Dehydrogenase/metabolism , Ketone Oxidoreductases/metabolism , Models, Molecular , Molecular Sequence Data , Molecular Weight , Multienzyme Complexes/metabolism , Mutagenesis, Site-Directed , Potassium Chloride/pharmacology , Protein Denaturation , Protein Kinases/chemistry , Protein Kinases/genetics , Protein Structure, Quaternary , Pyruvate Dehydrogenase (Lipoamide) , Pyruvate Dehydrogenase Complex/metabolism , Rats , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Urea
12.
Structure ; 8(3): 277-91, 2000 Mar 15.
Article in English | MEDLINE | ID: mdl-10745006

ABSTRACT

BACKGROUND: Mutations in components of the extraordinarily large alpha-ketoacid dehydrogenase multienzyme complexes can lead to serious and often fatal disorders in humans, including maple syrup urine disease (MSUD). In order to obtain insight into the effect of mutations observed in MSUD patients, we determined the crystal structure of branched-chain alpha-ketoacid dehydrogenase (E1), the 170 kDa alpha(2)beta(2) heterotetrameric E1b component of the branched-chain alpha-ketoacid dehydrogenase multienzyme complex. RESULTS: The 2.7 A resolution crystal structure of human E1b revealed essentially the full alpha and beta polypeptide chains of the tightly packed heterotetramer. The position of two important potassium (K(+)) ions was determined. One of these ions assists a loop that is close to the cofactor to adopt the proper conformation. The second is located in the beta subunit near the interface with the small C-terminal domain of the alpha subunit. The known MSUD mutations affect the functioning of E1b by interfering with the cofactor and K(+) sites, the packing of hydrophobic cores, and the precise arrangement of residues at or near several subunit interfaces. The Tyr-->Asn mutation at position 393-alpha occurs very frequently in the US population of Mennonites and is located in a unique extension of the human E1b alpha subunit, contacting the beta' subunit. CONCLUSIONS: Essentially all MSUD mutations in human E1b can be explained on the basis of the structure, with the severity of the mutations for the stability and function of the protein correlating well with the severity of the disease for the patients. The suggestion is made that small molecules with high affinity for human E1b might alleviate effects of some of the milder forms of MSUD.


Subject(s)
Ketone Oxidoreductases/chemistry , Maple Syrup Urine Disease/enzymology , Multienzyme Complexes/chemistry , Multienzyme Complexes/deficiency , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Amino Acid Sequence , Coenzymes/metabolism , Crystallography, X-Ray , Humans , Ketone Oxidoreductases/genetics , Maple Syrup Urine Disease/genetics , Models, Molecular , Molecular Sequence Data , Multienzyme Complexes/genetics , Mutation , Potassium/chemistry , Protein Binding , Protein Conformation , Pseudomonas putida/enzymology , Sequence Homology, Amino Acid
13.
J Biol Chem ; 274(15): 10395-404, 1999 Apr 09.
Article in English | MEDLINE | ID: mdl-10187829

ABSTRACT

The decarboxylase component (E1) of the human mitochondrial branched chain alpha-ketoacid dehydrogenase multienzyme complex (approximately 4-5 x 10(3) kDa) is a thiamine pyrophosphate-dependent enzyme, comprising two 45.5-kDa alpha subunits and two 37.8-kDa beta subunits. In the present study, His6-tagged E1 alpha2 beta2 tetramers (171 kDa) denatured in 8 M urea were competently reconstituted in vitro at 23 degrees C with an absolute requirement for chaperonins GroEL/GroES and Mg-ATP. Unexpectedly, the kinetics for the recovery of E1 activity was very slow with a rate constant of 290 M-1 s-1. Renaturation of E1 with a similarly slow kinetics was also achieved using individual GroEL-alpha and GroEL-beta complexes as combined substrates. However, the beta subunit was markedly more prone to misfolding than the alpha in the absence of GroEL. The alpha subunit was released as soluble monomers from the GroEL-alpha complex alone in the presence of GroES and Mg-ATP. In contrast, the beta subunit discharged from the GroEL-beta complex readily rebound to GroEL when the alpha subunit was absent. Analysis of the assembly state showed that the His6-alpha and beta subunits released from corresponding GroEL-polypeptide complexes assembled into a highly structured but inactive 85.5-kDa alpha beta dimeric intermediate, which subsequently dimerized to produce the active alpha2 beta2 tetrameter. The purified alpha beta dimer isolated from Escherichia coli lysates was capable of binding to GroEL to produce a stable GroEL-alpha beta ternary complex. Incubation of this novel ternary complex with GroES and Mg-ATP resulted in recovery of E1 activity, which also followed slow kinetics with a rate constant of 138 M-1 s-1. Dimers were regenerated from the GroEL-alpha beta complex, but they needed to interact with GroEL/GroES again, thereby perpetuating the cycle until the conversion from dimers to tetramers was complete. Our study describes an obligatory role of chaperonins in priming the dimeric intermediate for subsequent tetrameric assembly, which is a slow step in the reconstitution of E1 alpha2 beta2 tetramers.


Subject(s)
Chaperonin 10/metabolism , Chaperonin 60/metabolism , Chaperonins/metabolism , Pyruvate Decarboxylase/metabolism , Centrifugation, Density Gradient , Dimerization , Humans , Protein Conformation , Protein Denaturation , Protein Folding , Urea
14.
J Biol Chem ; 273(21): 13110-8, 1998 May 22.
Article in English | MEDLINE | ID: mdl-9582350

ABSTRACT

The E1 decarboxylase component of the human branched-chain ketoacid dehydrogenase complex comprises two E1alpha (45.5 kDa) and two E1beta (37.5 kDa) subunits forming an alpha2 beta2 tetramer. In patients with type IA maple syrup urine disease, the E1alpha subunit is affected, resulting in the loss of E1 and branched-chain ketoacid dehydrogenase catalytic activities. To study the effect of human E1alpha missense mutations on E1 subunit assembly, we have developed a pulse-chase labeling protocol based on efficient expression and assembly of human (His)6-E1alpha and untagged E1beta subunits in Escherichia coli in the presence of overexpressed chaperonins GroEL and GroES. Assembly of the two 35S-labeled E1 subunits was indicated by their co-extraction with Ni2+-nitrilotriacetic acid resin. The nine E1alpha maple syrup urine disease mutants studied showed aberrant kinetics of assembly with normal E1beta in the 2-h chase compared with the wild type and can be classified into four categories of normal (N222S-alpha and R220W-alpha), moderately slow (G245R-alpha), slow (G204S-alpha, A240P-alpha, F364C-alpha, Y368C-alpha, and Y393N-alpha), and no (T265R-alpha) assembly. Prolonged induction in E. coli grown in the YTGK medium or lowering of induction temperature from 37 to 28 degreesC (in the case of T265R-alpha), however, resulted in the production of mutant E1 proteins. Separation of purified E1 proteins by sucrose density gradient centrifugation showed that the wild-type E1 existed entirely as alpha2 beta2 tetramers. In contrast, a subset of E1alpha missense mutations caused the occurrence of exclusive alphabeta dimers (Y393N-alpha and F364C-alpha) or of both alpha2beta2 tetramers and lower molecular weight species (Y368C-alpha and T265R-alpha). Thermal denaturation at 50 degreesC indicated that mutant E1 proteins aggregated more rapidly than wild type (rate constant, 0.19 min-1), with the T265R-alpha mutant E1 most severely affected (rate constant, 4.45 min-1). The results establish that the human E1alpha mutations in the putative thiamine pyrophosphate-binding pocket that are studied, with the exception of G204S-alpha, have no effect on E1 subunit assembly. The T265R-alpha mutation adversely impacts both E1alpha folding and subunit interactions. The mutations involving the C-terminal aromatic residues impede both the kinetics of subunit assembly and the formation of the native alpha2 beta2 structure.


Subject(s)
Ketone Oxidoreductases/metabolism , Maple Syrup Urine Disease/enzymology , Multienzyme Complexes/metabolism , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Amino Acid Sequence , Animals , Catalysis , Chaperonin 10/metabolism , Chaperonin 60/metabolism , Electrophoresis, Gel, Pulsed-Field , Humans , Ketone Oxidoreductases/genetics , Ketone Oxidoreductases/isolation & purification , Kinetics , Maple Syrup Urine Disease/genetics , Molecular Sequence Data , Multienzyme Complexes/genetics , Multienzyme Complexes/isolation & purification , Mutation , Recombinant Proteins/genetics , Sequence Homology, Amino Acid
15.
J Clin Invest ; 100(3): 736-44, 1997 Aug 01.
Article in English | MEDLINE | ID: mdl-9239422

ABSTRACT

Maple syrup urine disease (MSUD) or branched-chain alpha-ketoaciduria is an autosomally inherited disorder in the catabolism of branched-chain amino acids leucine, isoleucine, and valine. The disease is characterized by severe ketoacidosis, mental retardation, and neurological impairments. MSUD can be classified into genetic subtypes according to the genes of the branched-chain alpha-ketoacid dehydrogenase (BCKD) complex which are affected in patients. We describe here four intronic deletions and an intronic nucleotide substitution in the E2 transacylase gene of type II MSUD, in which the E2 subunit of the BCKD complex is deficient. These new E2 mutations comprise an internal 3.2-kb deletion in intron 4 (causing a 17-bp insertion in mRNA), an internal 12-bp (ttaccttgttac) deletion in intron 4 (creating a 10-bp insertion), a 10-bp (catttctaG) deletion in intron 10/ exon 11 junction (leading to a 21-bp deletion), a 2-bp deletion in the exon 5/intron 5 junction (ATgt--> A-t) (resulting in the skipping of exon 5), and a G to A transition at nucleotide -7 of intron 9 (causing a 6-bp insertion). These intronic mutations were initially detected by secondary alterations in the mutant E2 mRNA, as a result of aberrant splicing. The 3.2-kb deletion in intron 4 was determined by the amplification of the entire intron from both a normal subject (11.2 kb) and a homozygous patient (8 kb) by long PCR, followed by subcloning and sequencing of regions flanking the deletion. Similar methods were used to identify and characterize the other intronic alterations. Our results depict heretofore undescribed splicing errors caused by the deletion of internal intronic segments, and provide an approach for detecting this class of novel and rare human mutation. The association of the thiamine-responsive phenotype with a subset of the type II MSUD patients studied is also discussed.


Subject(s)
Acyltransferases/genetics , Ketone Oxidoreductases/genetics , Maple Syrup Urine Disease/genetics , Multienzyme Complexes/genetics , Mutation , Thiamine/metabolism , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Acyltransferases/deficiency , Base Sequence , DNA Primers , Humans , Introns , Maple Syrup Urine Disease/metabolism , Molecular Sequence Data , RNA Splicing , RNA, Messenger/genetics , Thiamine/therapeutic use
16.
Virology ; 229(1): 57-67, 1997 Mar 03.
Article in English | MEDLINE | ID: mdl-9123878

ABSTRACT

The switch from transcription to replication of the VSV genome is coupled to assembly of nascent chains and involves an unspecified change in the P-L polymerase complex when it reaches the leader-N gene junction. PoIR VSV mutants, in contrast to wild-type virus, read through this first gene junction at high frequency without concurrent assembly, and they show altered ATP requirements for transcription in vitro. The mutation(s) responsible for the poIR phenotype segregates to the N-RNA template fraction. We report here that both poIR1 and poIR2 mutants display severe growth restriction in mouse L cells but not in BHK cells. Four of six poIR1 revertant viruses, originating from rare plaques on L cells, showed wild-type characteristics for growth, readthrough of leader-N gene junction, and ATP utilization, while two showed partial and quantitatively parallel coreversion of all properties. Sequence analysis of N and P genes of poIR mutants and revertants provided proof that a single mutation in the N protein, Arg179 to His, is responsible for the poIR phenotype. PoIR1, but not poIR2, also displayed a phenotypically silent GA-to-GG change in the N-P intergenic dinucleotide sequence Five of six revertants retained the poIR1 N protein mutation and showed no change in their P gene. We conclude that the L protein likely contains second-site suppressors of the poIR phenotype, and we propose that the switch from transcription to replication is modulated by an ATP-dependent interaction between the template-associated N protein and the L subunit of the P L polymerase complex.


Subject(s)
Adenosine Triphosphate/metabolism , Vesicular stomatitis Indiana virus/genetics , Animals , Cell Line , Cricetinae , L Cells/virology , Mice , Poly A/metabolism , Vesicular stomatitis Indiana virus/physiology , Viral Plaque Assay , Virus Replication
17.
J Virol ; 71(2): 1466-75, 1997 Feb.
Article in English | MEDLINE | ID: mdl-8995672

ABSTRACT

The vesicular stomatitis virus (VSV) polymerase is thought to initiate transcription of its genome by first copying a small leader RNA complementary to the 3' end of the template. The polR VSV mutants, in contrast to wild-type virus, frequently read through the leader termination site during transcription in vitro. To shed light on polymerase termination and reinitiation events at the crucial leader-N gene junction, we employed RNase protection assays to precisely measure molar ratios of leader, N, and readthrough transcript accumulation in vitro. Wild-type virus synthesized essentially equimolar amounts of leader and N transcripts, but, unexpectedly, the polR1 mutant yielded about twice as much N mRNA as leader (ratio of 1.9 +/- 0.1). Primer extension assays ruled out an increase in abortive N transcript synthesis for polR1. Transcription entailed multiple rounds of synthesis, with transcript ratios remaining the same after 0.5 or 2 h of synthesis, ruling out a significant contribution from polymerases "pre-positioned" at the N gene. No significant degradation of either leader or N transcripts was observed after incubating purified products with virions. Our data lead us to conclude that transcription can initiate internally at the N gene, at least in the case of polR1 VSV. We propose, however, that productive internal initiation of transcription is a fundamental property of the VSV polymerase and that of related viruses. A model postulating two distinct polymerase complexes, one for leader synthesis and one for internal initiation, is presented.


Subject(s)
Gene Expression Regulation, Viral , Genes, Viral , RNA, Viral/genetics , Vesicular stomatitis Indiana virus/genetics , Mutation , Transcription, Genetic
19.
J Nutr ; 125(6 Suppl): 1766S-1772S, 1995 06.
Article in English | MEDLINE | ID: mdl-7782943

ABSTRACT

Maple syrup urine disease (MSUD) or branched-chain ketoaciduria is caused by a deficiency of the branched-chain alpha-keto acid dehydrogenase (BCKAD) complex. This results in the accumulation of the branched-chain amino acids (BCAA) and branched-chain alpha-keto acids (BCKA), which often produce severe neurological damage and mental retardation. The present studies focus on mutations in the E1 alpha gene of the BCKAD complex and their effects on the assembly of the E1 decarboxylase component of the enzyme complex. We have developed an efficient histidine-tagged bacterial expression system that allows the folding and assembly of E1 alpha and E1 beta subunits into the E1 heterotetramer (alpha 2 beta 2) in the presence of overexpressed chaperonins GroEL and GroES. The results of pulse-chase experiments with this bacterial expression system showed that a majority of the 15 known E1 alpha mutations, including the prevalent Y393N of Mennonite MSUD patients, decrease the rate of association of normal E1 beta with mutant E1 alpha. This results in limited or no assembly of mutant E1. It is concluded that the carboxy-terminal region of the E1 alpha subunit encoded by exons 7-9 is important for subunit interaction. To stably correct MSUD, we have developed a retroviral vector that contains a normal E1 alpha precursor complementary DNA. Transduction of cultured lymphoblasts from a Mennonite MSUD patient with this recombinant retroviral vector completely restored the rate of decarboxylation of BCKA. The normal decarboxylation activity in transduced MSUD cells remained stable without antibiotic selection during the 14-week study.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Gene Expression Regulation, Enzymologic , Gene Transfer Techniques , Ketone Oxidoreductases/genetics , Maple Syrup Urine Disease/genetics , Multienzyme Complexes/genetics , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Humans , Ketone Oxidoreductases/metabolism , Maple Syrup Urine Disease/therapy , Multienzyme Complexes/metabolism , Phenotype , Retroviridae/genetics
20.
J Clin Invest ; 95(3): 954-63, 1995 Mar.
Article in English | MEDLINE | ID: mdl-7883996

ABSTRACT

Maple syrup urine disease (MSUD) is caused by a deficiency of the mitochondrial branched-chain alpha-keta acid dehydrogenase (BCKAD) complex. The multienzyme complex comprises five enzyme components, including the E1 decarboxylase with a heterotetrameric (alpha 2 beta 2) structure. Four unrelated Hispanic-Mexican MSUD patients with the intermediate clinical phenotype were diagnosed 7 to 22 mo after birth during evaluation for developmental delay. Three of the four patients were found homozygous for G to A transition at base 895 (exon 7) of the E1 alpha locus, which changes Gly-245 to Arg (G245R) in that subunit. The remaining patient was homozygous for T to G transversion at base 1,253 in the E1 alpha gene, which converts Phe-364 to Cys (F364C) in the gene product. Transfection studies in E1 alpha-deficient lymphoblasts indicate that both G245R and F364C mutant E1 alpha subunits were unable to significantly reconstitute BCKAD activity. Western blotting showed that both mutant E1 alpha subunits in transfected cells failed to efficiently rescue the normal E1 beta through assembly. The putative assembly defect was confirmed by pulse-chase labeling of E1 subunits in a chaperone-augmented bacterial overexpression system. The kinetics of initial assembly of the G245R E1 alpha subunit with the normal E1 beta was shown to be slower than the normal E1 alpha. No detectable assembly of the F364C E1 alpha with normal E1 beta was observed during the 2 h chase. Small amounts of recombinant mutant E1 proteins were produced after 15 h induction with isopropyl thiogalactoside and exhibited very low or no E1 activity. Our study establishes that G245R and F364C mutations in the E1 alpha subunit disrupt both the E1 heterotetrameric assembly and function of the BCKAD complex. Moreover, the results suggest that the G245R mutant E1 alpha allele may be important in the Hispanic-Mexican population.


Subject(s)
Ketone Oxidoreductases/genetics , Maple Syrup Urine Disease/etiology , Maple Syrup Urine Disease/genetics , Mexican Americans/genetics , Multienzyme Complexes/genetics , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Base Sequence , Blotting, Northern , Blotting, Western , Cells, Cultured , Child , Child, Preschool , Cloning, Molecular , Decarboxylation , Exons/genetics , Female , Fibroblasts/cytology , Hemiterpenes , Homozygote , Humans , Infant , Keto Acids/metabolism , Ketone Oxidoreductases/deficiency , Male , Maple Syrup Urine Disease/classification , Molecular Sequence Data , Multienzyme Complexes/deficiency , Mutation , Sequence Analysis, DNA , Skin/cytology , United States
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