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1.
Int J Pharm ; 656: 124092, 2024 May 10.
Article in English | MEDLINE | ID: mdl-38583820

ABSTRACT

Corneal collagen crosslinking (CXL) is an effective method to halt the disease progression of keratoconus, a progressive corneal dystrophy leading to cone shaped cornea. Despite the efficacy of standard protocol, the concerning step of this procedure is epithelial debridement performed to facilitate the entry of riboflavin drug. Riboflavin, a key molecule in CXL protocol, is a sparsely permeable hydrophilic drug in corneal tissues. The present study has employed cell penetrating peptide (CPP), Tat2, to enhance the penetration of riboflavin molecule, and thereby improve currently followed CXL protocol. This study demonstrates approximately two-fold enhanced uptake of CPP riboflavin conjugate, Tat2riboflavin-5'Phosphate (RiTe conjugate), both in vitro and in vivo. Two different CXL protocols (Epi ON and Epi OFF) have been introduced and implemented in rabbit corneas using RiTe conjugate in the present study. The standard and RiTe conjugate mediated CXL procedures exhibited an equivalent extent of crosslinking in both the methods. Reduced keratocyte loss and no endothelial damage in RiTe conjugate mediated CXL further ascertains the safety of the proposed CXL protocols. Therefore, RiTe conjugate mediated CXL protocols present as potential alternatives to the standard keratoconus treatment in providing equally effective, less invasive and patient compliant treatment modality.


Subject(s)
Collagen , Cornea , Cross-Linking Reagents , Keratoconus , Riboflavin , Keratoconus/drug therapy , Keratoconus/metabolism , Animals , Rabbits , Collagen/metabolism , Riboflavin/pharmacology , Cross-Linking Reagents/chemistry , Cornea/metabolism , Cornea/drug effects , Cell-Penetrating Peptides , Photosensitizing Agents/pharmacology , Photosensitizing Agents/therapeutic use
2.
Biochim Biophys Acta Biomembr ; 1866(2): 184255, 2024 Feb.
Article in English | MEDLINE | ID: mdl-37995845

ABSTRACT

Cell penetrating peptides (CPP) with their intrinsic ability to penetrate plasma membranes facilitate intracellular uptake of various macromolecules. Although a substantial number of CPPs have been reported over the last three decades, the number is still inadequate when compared to the theoretically feasible peptides with similar physicochemical composition. Marine organisms, due to their hostile environment, are an immense source of several high-valued therapeutically relevant peptides. Various marine derived antibacterial, antimycotic and anticancer peptides have demonstrated improved activity in comparison to peptides of terrestrial origin. While a significant number of marine bioactive peptides exist, cell penetrating peptides from marine organisms remain unravelled. In this study, we report Engraulisin from Engraulis japonicus, a computationally derived novel cell penetrating peptide of marine origin. Engraulisin manifest successful uptake in mammalian cells at 5 µM concentration with negligible cytotoxicity observed through MTT assay. Analysis of its cellular uptake mechanism revealed significant inhibition at 4 °C suggesting endocytosis as the major route of cellular entry. Interestingly, the novel peptide also demonstrated selective antimicrobial activity against Methicillin-resistant Staphylococcus aureus (MRSA). Additionally, molecular dynamics simulation with POPC and POPG bilayer system unveiled significance of positively charged residues in forming a stable membrane interaction. Engraulisin represents a novel marine-derived cell penetrating peptide which can be explored for cellular delivery of pharmaceutically relevant molecules.


Subject(s)
Cell-Penetrating Peptides , Methicillin-Resistant Staphylococcus aureus , Animals , Cell-Penetrating Peptides/chemistry , Methicillin-Resistant Staphylococcus aureus/metabolism , Pharmaceutical Preparations/metabolism , Cell Membrane/metabolism , Anti-Bacterial Agents/chemistry , Mammals
3.
Proteins ; 91(9): 1222-1234, 2023 09.
Article in English | MEDLINE | ID: mdl-37283297

ABSTRACT

The RNA-dependent RNA polymerase (RdRp) complex of SARS-CoV-2 lies at the core of its replication and transcription processes. The interfaces between holo-RdRp subunits are highly conserved, facilitating the design of inhibitors with high affinity for the interaction interface hotspots. We, therefore, take this as a model protein complex for the application of a structural bioinformatics protocol to design peptides that inhibit RdRp complexation by preferential binding at the interface of its core subunit nonstructural protein, nsp12, with accessory factor nsp7. Here, the interaction hotspots of the nsp7-nsp12 subunit of RdRp, determined from a long molecular dynamics trajectory, are used as a template. A large library of peptide sequences constructed from multiple hotspot motifs of nsp12 is screened in-silico to determine sequences with high geometric complementarity and interaction specificity for the binding interface of nsp7 (target) in the complex. Two lead designed peptides are extensively characterized using orthogonal bioanalytical methods to determine their suitability for inhibition of RdRp complexation. Binding affinity of these peptides to accessory factor nsp7, determined using a surface plasmon resonance (SPR) assay, is slightly better than that of nsp12: dissociation constant of 133nM and 167nM, respectively, compared to 473nM for nsp12. A competitive ELISA is used to quantify inhibition of nsp7-nsp12 complexation, with one of the lead peptides giving an IC50 of 25µM . Cell penetrability and cytotoxicity are characterized using a cargo delivery assay and MTT cytotoxicity assay, respectively. Overall, this work presents a proof-of-concept of an approach for rational discovery of peptide inhibitors of SARS-CoV-2 protein-protein interactions.


Subject(s)
COVID-19 , SARS-CoV-2 , Humans , Peptides/pharmacology , Amino Acid Sequence , RNA-Dependent RNA Polymerase
4.
Appl Microbiol Biotechnol ; 107(10): 3153-3181, 2023 May.
Article in English | MEDLINE | ID: mdl-37052636

ABSTRACT

Effective delivery of drug molecules to the target site is a challenging task. In the last decade, several innovations in the drug delivery system (DDS) have tremendously improved the therapeutic efficacy of drug molecules. Among various DDS, cell-penetrating peptides (CPPs) based DDS have gathered notable attention owing to their safety, efficacy, selectivity, specificity, and ease of synthesis. CPPs are emerging as an efficient and effective pharmaceutical nanocarriers-based platforms for successful management of various important human health disorders. Failure of several current chemotherapeutic strategies is attributed to low solubility, reduced bioavailability, and off-target delivery of several anti-cancer drugs. Similarly, development of therapeutics for vision-threatening disorders is challenged by the anatomical as well as physiological complexity of the eye. Such therapeutic challenges in cancer and ocular disease management can be overcome by developing cell-penetrating peptide (CPP) based peptide drug conjugates (PDCs). CPPs can be used to deliver various types of cargo molecules including nucleic acids, small molecules, and peptides/proteinaceous agents. In this review, we have briefly introduced CPPs and the linker strategies employed for the development of PDCs. Furthermore, recent studies employing CPP-based PDCs for cancer and ocular disease management have been discussed in detail highlighting their significance over conventional DDS. Later sections of the review are focused on the current status of clinical trials and future implications of CPP-based PDCs in vaccine development. KEY POINTS: • Cell-penetrating peptides (CPPs) can deliver a variety of cargo macromolecules via covalent and non-covalent conjugation. • CPP-based peptide drug conjugates (PDCs) can overcome drawbacks of conventional drug delivery methods such as biocompatibility, solubility, stability, and specificity. • Various PDCs are in clinical trial phase for cancer and ocular therapeutics.


Subject(s)
Cell-Penetrating Peptides , Neoplasms , Nucleic Acids , Humans , Drug Delivery Systems/methods , Pharmaceutical Preparations , Neoplasms/drug therapy
5.
Pharmaceutics ; 15(2)2023 Feb 16.
Article in English | MEDLINE | ID: mdl-36839994

ABSTRACT

We investigate the role of Tachyplesin (Tpl), a marine antimicrobial cell-penetrating peptide, as an anti-HBV agent. Our findings, using confocal microscopy and flow cytometry, demonstrate the internalization of FITC-Tpl in both Huh7 and HepG2 cell lines. Further, our results show that Tpl inhibits the expression of HBV proteins, including hepatitis B surface antigen (HBsAg) and hepatitis B 'e' antigen (HBeAg) in cell supernatants of human liver cell lines transfected with 1.3× pHBV. Interestingly Tpl also reduces levels of HBV pre-core RNA and HBV pregenomic RNA, suggesting that Tpl-mediated inhibition occurs at the early stages of HBV replication, including viral transcription. In addition, Tpl led to a significant reduction in levels of hepatitis B virion secretion. In sum, here we demonstrate the potent anti-HBV activity of Tpl at non-cytotoxic concentrations indicating the potential of Tpl to emerge as an effective therapeutic peptide against HBV.

6.
FEBS Open Bio ; 13(3): 519-531, 2023 03.
Article in English | MEDLINE | ID: mdl-36683396

ABSTRACT

Visceral leishmaniasis (VL) is among the most neglected tropical diseases in the world. Drug cell permeability is essential for killing the intracellular residing parasites responsible for VL, making cell-permeating peptides a logical choice to address VL. Unfortunately, the limited biological stability of peptides restricts their usage. Sequence-specific oligo-N-substituted glycines ('peptoids') are a class of peptide mimics that offers an excellent alternative to peptides in terms of ease of synthesis and good biostability. We tested peptoids against the parasite Leishmania donovani in both forms, that is, intracellular amastigotes and promastigotes. N-alkyl hydrophobic chain addition (lipidation) and bromination of oligopeptoids yielded compounds with good antileishmanial activity against both forms, showing the promise of these antiparasitic peptoids as potential drug candidates to treat VL.


Subject(s)
Leishmania donovani , Leishmaniasis, Visceral , Peptoids , Humans , Leishmaniasis, Visceral/drug therapy , Leishmaniasis, Visceral/parasitology , Peptoids/pharmacology , Peptoids/therapeutic use , Biomimetics , Peptides
7.
Appl Microbiol Biotechnol ; 106(13-16): 5249-5259, 2022 Aug.
Article in English | MEDLINE | ID: mdl-35821432

ABSTRACT

Reports on chloroplast-targeted protein delivery using cell-penetrating peptides are scarce. In this study, a novel peptide-based macromolecule delivery strategy targeting chloroplasts was successfully developed in wheat mesophyll protoplasts. A peptide derived from the signal sequence of the chloroplast-targeted protein of ferredoxin-thioredoxin reductase catalytic chain of Spinacia oleracea with UniProtKB Id-P41348 exhibits properties of cellular internalization. DNase I was efficiently delivered into the chloroplast using 10 µM cTP with an efficiency of more than 90%. This cell-penetrating peptide-mediated approach offers various advantages over the existing chloroplast targeting methods, such as non-invasiveness, biocompatibility, low-toxicity, and target-specific delivery. The present study shows that peptide-based strategies hold tremendous potential in the field of chloroplast biotechnology. KEY POINTS: • Screening of database of chloroplast targeting peptides in order to develop an efficient cell-penetrating peptide termed as cTP. • cTP efficiently crosses the cell barrier and demonstrated chloroplast-localization. • cTP can be incorporated as a promising strategy for delivering macromolecules for crop improvement.


Subject(s)
Cell-Penetrating Peptides , Cell-Penetrating Peptides/metabolism , Chloroplasts/metabolism , Protein Sorting Signals , Protoplasts/metabolism
8.
Biochim Biophys Acta Biomembr ; 1864(7): 183895, 2022 07 01.
Article in English | MEDLINE | ID: mdl-35271828

ABSTRACT

Mycobacterium tuberculosis is an etiological agent of tuberculosis (TB) known to be a highly contagious disease and is the major cause of mortality from a single infectious agent worldwide. Emergence of multi-drug resistant and extremely drug resistant strains of M. tuberculosis has made TB management extremely challenging eliciting the urgent need for alternative therapeutics. Peptide based therapeutic strategies are an emerging area that can be employed as a prospective alternative to the currently existing therapeutic regime for TB treatment. Here, we are reporting the anti-mycobacterial activity of two peptides, Tachyplesin and CyLoP-1, derived from marine horseshoe crab and snake toxin respectively, with potent anti-mycobacterial activity against various mycobacterium species. Both the peptides exhibit appreciable antimicrobial and anti-biofilm activities against mycobacterium species with minimum cytotoxicity towards macrophage cells. They are also effective in eliminating mycobacterium cells from infected macrophage cells. Tachyplesin acts on mycobacterium cells in a lytic manner with outer membrane disruption confirmed by propidium iodide uptake with slight membrane depolarization and reactive oxygen species (ROS) production. CyLoP-1, on the other hand, does not rupture the mycobacterium cells even at high concentrations. It seems to follow intracellular pathway of killing mycobacterium cells by production of more ROS and membrane depolarization. Both the peptides do not lead to apoptotic way of mycobacterium cell death. These results suggest an effective peptide-based antimicrobial strategy for development of future anti-TB therapeutics.


Subject(s)
Anti-Infective Agents , Mycobacterium tuberculosis , Tuberculosis , Anti-Infective Agents/pharmacology , Antimicrobial Cationic Peptides/pharmacology , Antitubercular Agents/pharmacology , DNA-Binding Proteins , Humans , Peptides, Cyclic , Prospective Studies , Reactive Oxygen Species , Tuberculosis/drug therapy
9.
Int J Mol Sci ; 22(18)2021 Sep 21.
Article in English | MEDLINE | ID: mdl-34576320

ABSTRACT

A group of seven peptides from spider venom with diverse sequences constitute the latarcin family. They have been described as membrane-active antibiotics, but their lipid interactions have not yet been addressed. Using circular dichroism and solid-state 15N-NMR, we systematically characterized and compared the conformation and helix alignment of all seven peptides in their membrane-bound state. These structural results could be correlated with activity assays (antimicrobial, hemolysis, fluorescence vesicle leakage). Functional synergy was not observed amongst any of the latarcins. In the presence of lipids, all peptides fold into amphiphilic α-helices as expected, the helices being either surface-bound or tilted in the bilayer. The most tilted peptide, Ltc2a, possesses a novel kind of amphiphilic profile with a coiled-coil-like hydrophobic strip and is the most aggressive of all. It indiscriminately permeabilizes natural membranes (antimicrobial, hemolysis) as well as artificial lipid bilayers through the segregation of anionic lipids and possibly enhanced motional averaging. Ltc1, Ltc3a, Ltc4a, and Ltc5a are efficient and selective in killing bacteria but without causing significant bilayer disturbance. They act rather slowly or may even translocate towards intracellular targets, suggesting more subtle lipid interactions. Ltc6a and Ltc7, finally, do not show much antimicrobial action but can nonetheless perturb model bilayers.


Subject(s)
Pore Forming Cytotoxic Proteins/chemistry , Pore Forming Cytotoxic Proteins/metabolism , Spider Venoms/chemistry , Amino Acid Sequence , Animals , Antimicrobial Cationic Peptides/chemistry , Cell Membrane/metabolism , Circular Dichroism , Hydrophobic and Hydrophilic Interactions , Lipid Bilayers/chemistry , Magnetic Resonance Spectroscopy
10.
Eur J Pharm Biopharm ; 166: 216-226, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34214635

ABSTRACT

Delivery of therapeutics to the ocular tissues is challenging due to various anatomical and physiological barriers imposed. Cell penetrating peptides (CPPs) have emerged as potent drug nanocarriers that have been shown to overcome these barriers and enhance bioavailability of therapeutic macromolecules in deep ocular tissues. In the present study, an ocular targeting CPP has been designed by exploring potential targets of anterior ocular tissues in particular receptors, transporters and glycosaminoglycans (GAGs). The novel 11 mer peptide sequence, Corneal Targeting Sequence 1 (CorTS 1), has been developed by modifying leucine rich repeat (LRR) motif ensuring that it interacts with small leucine rich proteoglycans and collagen present in the corneal stroma. CorTS 1 exhibited dose dependent cellular translocation from 5 µM in Human Corneal Epithelial cell line (HCE) with no cytotoxicity. CorTS 1 was also found to deliver protein cargo inside HCE cells. Ex vivo tissue penetration study of CorTS 1 demonstrated in goat eyes revealed an augmented accumulation of peptide in the stromal region of cornea than in aqueous humor. Interestingly, CorTS 1 showed an antimicrobial activity against MRSA and Fusarium dimerum. Therefore, CorTS 1 can be a promising candidate with dual traits of antimicrobial agent and nanocarrier for ocular drugs.


Subject(s)
Anti-Infective Agents/pharmacology , Cell-Penetrating Peptides/pharmacology , Cornea , Nanoparticle Drug Delivery System/pharmacology , Administration, Ophthalmic , Animals , Biological Availability , Biological Transport, Active , Collagen/metabolism , Cornea/drug effects , Cornea/metabolism , Drug Carriers , Drug Delivery Systems/methods , Fusarium/drug effects , Goats , Methicillin-Resistant Staphylococcus aureus/drug effects , Small Leucine-Rich Proteoglycans/metabolism
11.
Biochim Biophys Acta Biomembr ; 1863(8): 183629, 2021 08 01.
Article in English | MEDLINE | ID: mdl-33933430

ABSTRACT

Visceral leishmaniasis is one of the neglected tropical diseases caused by an intracellular parasite, Leishmania donovani. Drug resistance, adverse side effects and long treatment regimes are important limitations in achieving the effective elimination of visceral leishmaniasis. In the absence of any vaccine, chemotherapy remains a viable treatment for leishmaniasis. For effective killing of leishmania parasite, the drug molecule needs to cross the cell membrane. In the present study, marine membrane-active peptide Tachyplesin has been used against Leishmania donovani. Further, the mechanism of action and importance of cysteine amino acids of Tachyplesin in anti-leishmanial activity has been assessed. The cargo-carrying ability of Tachyplesin in L. donovani has been established. Thus, dual-use of Tachyplesin as an anti-leishmanial peptide as well as a cargo delivery vehicle makes the marine peptide an attractive therapeutic target against visceral leishmaniasis.


Subject(s)
Antimicrobial Cationic Peptides/pharmacology , DNA-Binding Proteins/pharmacology , Leishmania donovani/drug effects , Leishmaniasis, Visceral/drug therapy , Peptides, Cyclic/pharmacology , Peptides/pharmacology , Antimicrobial Cationic Peptides/chemistry , Antimicrobial Cationic Peptides/genetics , Cell Membrane/drug effects , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , Humans , Leishmania donovani/pathogenicity , Leishmaniasis, Visceral/genetics , Leishmaniasis, Visceral/parasitology , Leishmaniasis, Visceral/pathology , Peptides/chemistry , Peptides/genetics , Peptides, Cyclic/chemistry , Peptides, Cyclic/genetics
12.
Arch Biochem Biophys ; 702: 108822, 2021 05 15.
Article in English | MEDLINE | ID: mdl-33722536

ABSTRACT

Capsids of several RNA viruses are reported to have unconventional roles attributed to their subcellular trafficking property. The capsid of CHIKV is also found to localize in the nucleus, but the rationale is not yet clear. To understand the role of the nuclear-localized capsid, we examined the nucleic acid binding and cargo delivery activity of the CHIKV capsid. We used bacterially purified capsid protein to probe the binding affinity with CHIKV genome-specific and non-specific nucleic acids. We found that the capsid was able to bind non-specifically to different forms of nucleic acids. The successful transfection of GFP-tagged plasmid DNA by CHIKV capsid protein shows the DNA delivery ability of the protein. Further, we selected and investigated the DNA binding and cargo delivery activity of commercially synthesized Nuclear Localization Signal sequences (NLS 1 and NLS2) of capsid protein. Both peptides showed comparable DNA binding affinity, however, only the NLS1 peptide was capable of delivering plasmid DNA inside the cell. Furthermore, the cellular uptake study using the FITC-labelled NLS1 peptide was performed to highlight the membrane penetrating ability. Structural analysis was performed using circular dichroism and NMR spectroscopy to elucidate the transfection ability of the NLS1 peptides. Our findings suggest that the capsid of CHIKV might influence cellular trafficking in the infected cell via non-specific interactions. Our study also indicates the significance of NLS sequences in the multifunctionality of CHIKV capsid protein.


Subject(s)
Capsid Proteins/chemistry , Capsid Proteins/metabolism , Chikungunya virus/metabolism , DNA/metabolism , Nuclear Localization Signals , Amino Acid Sequence , Biological Transport , Models, Molecular , Protein Domains
13.
Int J Pharm ; 600: 120484, 2021 May 01.
Article in English | MEDLINE | ID: mdl-33737097

ABSTRACT

Natamycin is the only FDA approved drug that is used as a first line of treatment for fungal keratitis caused by filamentous fungi, however natamycin is known for poor corneal penetration. Cell penetrating peptides (CPPs) are emerging nanocarriers for the enhanced delivery of various macromolecules owing to their distinct cellular translocation ability. In the present study, tissue penetration ability and antifungal efficacy of CPP (Tat2) conjugated natamycin has been investigated and compared with natamycin alone in vivo. Results show that Tat2natamycin exhibits five- fold higher ocular penetration than natamycin alone when given topically. Complete resolution of fungal keratitis in 44% of the animals in Tat2natamycin treated group as compared to only 13% of the animals in natamycin treated group further highlights its increased antifungal efficacy. Hence, this conjugate is a promising antifungal molecule with enhanced ocular penetration as well as antifungal efficacy against selected fungal species.


Subject(s)
Cell-Penetrating Peptides , Eye Infections, Fungal , Keratitis , Animals , Antifungal Agents/therapeutic use , Eye Infections, Fungal/drug therapy , Keratitis/drug therapy , Natamycin
14.
Int J Pharm ; 572: 118789, 2019 Dec 15.
Article in English | MEDLINE | ID: mdl-31726199

ABSTRACT

The levels of microRNAs (miRNAs) are altered in various diseases including glioblastoma (GBM) and this alteration may have widespread effects on various hallmarks of cancer cells. MiR210 is overexpressed in GBM and functions as an oncogenic miRNA. Anti-miR210 therapy holds great promise but its efficient delivery remains a major challenge. Our work here explores a novel role of Tachyplesin (Tpl), a cell-penetrating antimicrobial peptide, as a nanocarrier for anti-miR210. Tpl electrostatically interacts with anti-miR210 at 1:25 and 1:50 (anti-miR:Tpl) weight ratios to form a complex and efficiently delivers anti-miR210 inside GBM cells cultured as 2D and 3D spheroid model. Treatment of GBM cells with the complex significantly inhibited miR210 levels (~90%), proliferation, migration and spheroid formation ability and induced apoptosis as evident by increased levels of caspase 3/7 and ROS. GBM cells pre-treated with anti-miR210:Tpl complex were also found to be sensitive to TMZ mediated action. Uptake of the complex in GBM cells induced the levels of miR210 targeted tumor suppressor genes, NeuroD2 and HIF3A. Overall, our work reveals a novel and efficient miRNA delivery ability of Tpl in glioma cells, holding a great promise for treatment of GBM and potentially for other cancers.


Subject(s)
Antagomirs/pharmacology , Antimicrobial Cationic Peptides/metabolism , Antineoplastic Agents/pharmacology , Brain Neoplasms/drug therapy , Cell-Penetrating Peptides/metabolism , DNA-Binding Proteins/metabolism , Drug Carriers , Glioblastoma/drug therapy , MicroRNAs/antagonists & inhibitors , Peptides, Cyclic/metabolism , Antagomirs/chemistry , Antagomirs/genetics , Antagomirs/metabolism , Antimicrobial Cationic Peptides/chemistry , Antineoplastic Agents/chemistry , Antineoplastic Agents/metabolism , Antineoplastic Agents, Alkylating/pharmacology , Apoptosis/drug effects , Brain Neoplasms/genetics , Brain Neoplasms/metabolism , Brain Neoplasms/pathology , Caspase 3/metabolism , Caspase 7/metabolism , Cell Line, Tumor , Cell Movement/drug effects , Cell Proliferation/drug effects , Cell-Penetrating Peptides/chemistry , DNA-Binding Proteins/chemistry , Drug Compounding , Gene Expression Regulation, Neoplastic , Glioblastoma/genetics , Glioblastoma/metabolism , Glioblastoma/pathology , Humans , MicroRNAs/genetics , MicroRNAs/metabolism , Peptides, Cyclic/chemistry , Reactive Oxygen Species/metabolism , Signal Transduction , Temozolomide/pharmacology
15.
Plant Physiol Biochem ; 127: 343-354, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29655154

ABSTRACT

Drought is one of the severe abiotic stress that affects the productivity of rice, an important staple crop that is consumed all over the world. The traits responsible for enhancing or adapting drought resistance in rice plants can be selected and studied to improve their growth under stress conditions. Experiments have been conducted on indica rice varieties comprising Sahabhagidhan as drought tolerant variety and IR64, MTU1010 categorized as drought sensitive varieties. Various root related biochemical and morphological traits such as root length, relative water content (RWC), xylem number, xylem area, proline content, and malondialdehyde content have been investigated for a comparative study of the plant response to drought stress in different rice varieties. The results of differential root transcriptome analysis have revealed that there is a notable difference in gene expression of OsPIP2;5 and OsNIP2;1 in various indica varieties of rice at different time periods of stress. The present work aims at assessing the correlation between genotypic and phenotypic traits that can contribute towards the emerging field of rice phenomics.


Subject(s)
Gene Expression Regulation, Plant , Genotype , Oryza , Phenotype , Plant Proteins , Stress, Physiological , Dehydration/genetics , Dehydration/metabolism , Gene Expression Profiling , Oryza/genetics , Oryza/metabolism , Plant Proteins/biosynthesis , Plant Proteins/genetics
16.
Eur J Pharm Sci ; 115: 43-49, 2018 Mar 30.
Article in English | MEDLINE | ID: mdl-29329747

ABSTRACT

Cell-penetrating peptides (CPPs) and antimicrobial peptides (AMPs) share certain physicochemical parameters such as amphipathicity, hydrophobicity, cationicity and pI, due to which these two groups of peptides also exhibit overlapping functional characteristics. In our current work, we have evaluated antimicrobial properties of cell-penetrating peptides derived from Latarcin1. Latarcin derived peptide (LDP) exhibited antimicrobial activity against representative microorganisms tested and bactericidal effect against methicillin resistant Staphylococcus aureus (MRSA), which was used as model organism of study in the present work. However, LDP exhibited cytotoxicity against HeLa cells. Further, nuclear localization sequence (NLS) was fused to LDP and interestingly, LDP-NLS showed antimicrobial effect against bacteria, showed bactericidal effect against MRSA and also did not exhibit cytotoxicity in HeLa cells till the highest concentrations tested. Thus, our results inferred that fusion of NLS to LDP significantly reduced cytotoxicity of LDP against HeLa cells (Ponnappan and Chugh, 2017) and exhibited significantly higher cell-penetrating activity in MRSA in comparison to LDP alone. Consolidated results of uptake assays, time-kill assays and PI membrane damage assays show that LDP killed MRSA mainly by membrane damage, where as LDP-NLS might have intracellular targets. Owing to its cell-penetrating activity in HeLa cells and antimicrobial activity against MRSA, LDP-NLS efficiently inhibited intracellular infection of MRSA in HeLa cells as observed in invasion assays. Hence, our results suggest that LDP-NLS is a dual action peptide with AMP and CPP activity and could be potential candidate as peptide antibiotic and drug delivery vector in both mammalian and bacterial cells.


Subject(s)
Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Cell-Penetrating Peptides/chemistry , Cell-Penetrating Peptides/pharmacology , Cell Line, Tumor , Drug Delivery Systems/methods , HeLa Cells , Humans , Methicillin-Resistant Staphylococcus aureus/drug effects , Microbial Sensitivity Tests/methods
17.
Biochim Biophys Acta Biomembr ; 1860(2): 250-256, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29108892

ABSTRACT

Cell-penetrating peptides and antimicrobial peptides share physicochemical characteristics and mechanisms of interaction with biological membranes, hence, termed as membrane active peptides. The present study aims at evaluating AMP activity of CPPs. LDP-NLS and LDP are Latarcin 1 derived cell-penetrating peptides and in the current study we have evaluated antifungal and cell-penetrating properties of these CPPs in Fusarium solani. We observed that LDP-NLS and LDP exhibited excellent antifungal activity against the fungus. Cellular uptake experiments with LDP-NLS and LDP showed that LDP-NLS acted as a CPP but LDP uptake into fungal spores and hyphae was negligible. CPP and AMP activity of mutated version of LDP-NLS was also evaluated and it was observed that both the activities of the peptide were compromised, signifying the importance of arginines and lysines present in LDP-NLS for initial interaction of membrane active peptides with biological membranes. Dextrans and Propidium Iodide uptake studies revealed that the mode of entry of LDP-NLS into fungal hyphae is through pore formation. Also, both LDP-NLS and LDP showed no cytotoxicity when infiltered into leaf tissues. Overall, our results suggest that LDP-NLS and LDP are selectively cytotoxic to F. solani and can be a potent peptide based antifungal agents.


Subject(s)
Antifungal Agents/pharmacology , Antimicrobial Cationic Peptides/pharmacology , Cell-Penetrating Peptides/pharmacology , Fusarium/drug effects , Spider Venoms/pharmacology , Amino Acid Sequence , Antifungal Agents/chemistry , Antimicrobial Cationic Peptides/chemistry , Cell Survival/drug effects , Cell-Penetrating Peptides/chemistry , Fusarium/physiology , Hyphae/drug effects , Hyphae/physiology , Microbial Sensitivity Tests , Phaseolus/cytology , Phaseolus/drug effects , Plant Leaves/cytology , Plant Leaves/drug effects , Spider Venoms/chemistry , Spores, Fungal/drug effects , Spores, Fungal/growth & development
18.
Eur J Pharm Biopharm ; 114: 145-153, 2017 May.
Article in English | MEDLINE | ID: mdl-28159722

ABSTRACT

Cell-penetrating peptides are short cationic peptides with inherent ability to cross the plasma membrane barrier as well as intracellularly deliver cargo molecules conjugated to them. Venoms from snakes, scorpions and spiders are rich in membrane-active peptides. Crotamine from snake venom as well as maurocalcine and imperatoxin isolated from scorpion venoms have been reported to possess cell-penetrating property in mammalian cells. Latarcins, a group of spider venom toxins, has also been reported to possess antimicrobial property. However, cell-penetrating ability of Latarcins is still not elucidated. This is the first report where cell-penetrating ability of a peptide derived from spider toxin, Latarcin 1 has been demonstrated. Interestingly, the structurally minimized sequence of Latarcin 1 (LDP - Latarcin-derived peptide) when conjugated with nuclear localization sequence from Simian Virus T40 antigen (LDP-NLS) translocates across cell membrane in HeLa cells. The chimeric LDP-NLS peptide also did not exhibit cytotoxicity towards mammalian cells in contrast to the LDP that showed lesser uptake and higher cytotoxicity. LDP-NLS also successfully delivered macromolecular protein cargo inside the cells.


Subject(s)
Antimicrobial Cationic Peptides/pharmacology , Cell Membrane Permeability/drug effects , Cell-Penetrating Peptides/pharmacology , Spider Venoms/pharmacology , Antigens, Viral/chemistry , Antimicrobial Cationic Peptides/toxicity , Cell Line , Cell-Penetrating Peptides/toxicity , Computer Simulation , Drug Delivery Systems , Endocytosis/drug effects , HeLa Cells , Humans , Macromolecular Substances/administration & dosage , Simian virus 40 , Spider Venoms/toxicity , beta-Galactosidase/metabolism
19.
Biochim Biophys Acta Biomembr ; 1859(2): 167-176, 2017 Feb.
Article in English | MEDLINE | ID: mdl-27836642

ABSTRACT

CyLoP-1 is a cysteine-rich cell-penetrating peptide derived from nuclear localization sequence of snake toxin, crotamine. The peptide has shown cytoplasmic uptake in mammalian cells at lower concentrations. In the present study, the cell-penetrating and antimicrobial activity of the peptide has been studied by employing mammalian cells, plant cells as well as bacterial and fungal pathogens. The study shows that the peptide acts as an effective CPP and a cargo-delivery vector for not only mammalian cells but also for plant cells. Besides this, the peptide also possesses antimicrobial activity against representative pathogens tested. It is shown to be effective in killing methicillin-resistant Staphylococcus aureus. We have observed that the presence of cysteine residues in the peptide play a major role in conferring cell-penetrating as well as antimicrobial activity to the peptide since there is a significant decline in these activities when cysteine residues are replaced with serine residues. Our findings are significant for the proposition that CyLoP-1 is an efficient membrane-active peptide with both cell-penetrating and antimicrobial activity. Hence, it can be further evaluated for its application in the field of drug-delivery, plant biotechnology and as a peptide-antibiotic.


Subject(s)
Anti-Infective Agents/pharmacology , Antimicrobial Cationic Peptides/pharmacology , Cell Membrane/metabolism , Cell-Penetrating Peptides/pharmacology , Oligopeptides/pharmacology , Animals , Cell Line, Tumor , Crotalid Venoms/metabolism , Crotalus/metabolism , Cysteine/metabolism , HeLa Cells , Humans , Methicillin-Resistant Staphylococcus aureus/drug effects , Microbial Sensitivity Tests/methods
20.
FEBS Lett ; 590(17): 2896-905, 2016 09.
Article in English | MEDLINE | ID: mdl-27461847

ABSTRACT

Mitochondrial malfunction under various circumstances can lead to a variety of disorders. Effective targeting of macromolecules (drugs) is important for restoration of mitochondrial function and treatment of related disorders. We have designed a novel cell-penetrating mitochondrial transit peptide (CpMTP) for delivery of macromolecules to mitochondria. Comparison between properties of cell-penetrating peptides (CPPs) and mitochondrial signal sequences enabled prediction of peptides with dual ability for cellular translocation and mitochondrial localization. Among the predicted peptides, CpMTP translocates across HeLa cells and shows successful delivery of noncovalently conjugated cargo molecules to mitochondria. CpMTP may have applications in transduction and transfection of mitochondria for therapeutics.


Subject(s)
Cell-Penetrating Peptides/metabolism , Drug Delivery Systems , Macromolecular Substances/metabolism , Mitochondria/metabolism , Amino Acid Sequence/genetics , Cell-Penetrating Peptides/genetics , Cell-Penetrating Peptides/therapeutic use , HeLa Cells , Humans , Macromolecular Substances/therapeutic use , Mitochondria/genetics , Transfection
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