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1.
Phys Rev Lett ; 127(3): 033001, 2021 Jul 16.
Article in English | MEDLINE | ID: mdl-34328758

ABSTRACT

Isotope shifts of ^{223-226,228}Ra^{19}F were measured for different vibrational levels in the electronic transition A^{2}Π_{1/2}←X^{2}Σ^{+}. The observed isotope shifts demonstrate the particularly high sensitivity of radium monofluoride to nuclear size effects, offering a stringent test of models describing the electronic density within the radium nucleus. Ab initio quantum chemical calculations are in excellent agreement with experimental observations. These results highlight some of the unique opportunities that short-lived molecules could offer in nuclear structure and in fundamental symmetry studies.

2.
Rev Sci Tech ; 39(1): 283-288, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32729559

ABSTRACT

Veterinary certificates have been an integral component of animal and animal product trade for many years. These certificates are agreed to by trading partners during bilateral or multilateral negotiations on the trade of animals and animal products, and provide assurance that goods are free from specific diseases. Many countries seek to implement or adopt a more streamlined and secure method of information exchange, with some implementing the electronic exchange of certificates for cross-border trade. Such an exchange of data has many advantages over its paper counterpart, including a streamlined business process, better accessibility to information (particularly in advance of shipment arrival) and the reduction of fraudulent certificates. Although there are some challenges related to this initiative and important considerations to be taken into account for its implementation, many countries are becoming aware of its efficiencies, leading to more productive and mutually beneficial trading-partner relationships.


Les certificats vétérinaires sont une composante essentielle des échanges internationaux d'animaux et de produits d'origine animale depuis de nombreuses années. Il s'agit de certificats approuvés préalablement par les partenaires commerciaux lors de négociations bilatérales ou multilatérales relatives aux échanges d'animaux et de produits d'origine animale et qui apportent la garantie que les marchandises échangées sont indemnes de certaines maladies spécifiées. Plusieurs pays ont cherché à mettre en oeuvre ou à valider une procédure d'échange d'informations à la fois plus simple et plus sûre ; parmi eux certains ont mis en place un système de certification électronique pour les échanges transfrontaliers. Ce type de transmission de données présente de nombreux avantages par rapport à la délivrance de certificats papier : un processus opérationnel rationalisé, un meilleur accès à l'information (en particulier avant l'arrivée d'une cargaison) et un nombre réduit de certificats frauduleux. Bien que certains problèmes en lien avec cette initiative restent encore à résoudre et que plusieurs aspects importants devront être pris en compte lors de sa mise en oeuvre, un nombre croissant de pays prennent conscience du fait que les performances d'un tel système contribueront à des relations plus productives et mutuellement bénéfiques entre partenaires commerciaux.


Hace ya muchos años que los certificados veterinarios son un componente intrínseco del comercio de animales y productos de origen animal. Estos certificados, acordados por las partes en el curso de negociaciones bilaterales o multilaterales sobre ese tipo de comercio, aportan la garantía de que las mercancías están exentas de una u otra enfermedad. Muchos países están tratando de aplicar o adoptar un método más ágil y seguro para intercambiar información, y algunos están implantando el intercambio de certificados por vía electrónica para operaciones comerciales transfronterizas. Esta modalidad de transmisión de datos presenta muchas ventajas con respecto al uso del papel, en particular porque agiliza los procesos de trabajo, facilita el acceso a la información (en particular, antes de que llegue la mercancía) y reduce los casos de certificados fraudulentos. Aunque esta iniciativa no deja de presentar dificultades y hay importantes consideraciones que es preciso tener en cuenta para llevarla adelante, muchos países van cobrando conciencia de que trae consigo procesos más eficientes y se traduce en relaciones más productivas y mutuamente beneficiosas entre los socios comerciales.


Subject(s)
Commerce , International Cooperation , Animals
3.
Sci Rep ; 10(1): 12306, 2020 Jul 23.
Article in English | MEDLINE | ID: mdl-32704132

ABSTRACT

This work reports on the application of a novel electric field-ionization setup for high-resolution laser spectroscopy measurements on bunched fast atomic beams in a collinear geometry. In combination with multi-step resonant excitation to Rydberg states using pulsed lasers, the field ionization technique demonstrates increased sensitivity for isotope separation and measurement of atomic parameters over previous non-resonant laser ionization methods. The setup was tested at the Collinear Resonance Ionization Spectroscopy experiment at ISOLDE-CERN to perform high-resolution measurements of transitions in the indium atom from the [Formula: see text] and [Formula: see text] states to [Formula: see text]p [Formula: see text]P and [Formula: see text]F Rydberg states, up to a principal quantum number of [Formula: see text]. The extracted Rydberg level energies were used to re-evaluate the ionization potential of the indium atom to be [Formula: see text]. The nuclear magnetic dipole and nuclear electric quadrupole hyperfine structure constants and level isotope shifts of the [Formula: see text] and [Formula: see text] states were determined for [Formula: see text]In. The results are compared to calculations using relativistic coupled-cluster theory. A good agreement is found with the ionization potential and isotope shifts, while disagreement of hyperfine structure constants indicates an increased importance of electron correlations in these excited atomic states. With the aim of further increasing the detection sensitivity for measurements on exotic isotopes, a systematic study of the field-ionization arrangement implemented in the work was performed at the same time and an improved design was simulated and is presented. The improved design offers increased background suppression independent of the distance from field ionization to ion detection.

4.
Nature ; 581(7809): 396-400, 2020 05.
Article in English | MEDLINE | ID: mdl-32461650

ABSTRACT

Molecular spectroscopy offers opportunities for the exploration of the fundamental laws of nature and the search for new particle physics beyond the standard model1-4. Radioactive molecules-in which one or more of the atoms possesses a radioactive nucleus-can contain heavy and deformed nuclei, offering high sensitivity for investigating parity- and time-reversal-violation effects5,6. Radium monofluoride, RaF, is of particular interest because it is predicted to have an electronic structure appropriate for laser cooling6, thus paving the way for its use in high-precision spectroscopic studies. Furthermore, the effects of symmetry-violating nuclear moments are strongly enhanced5,7-9 in molecules containing octupole-deformed radium isotopes10,11. However, the study of RaF has been impeded by the lack of stable isotopes of radium. Here we present an experimental approach to studying short-lived radioactive molecules, which allows us to measure molecules with lifetimes of just tens of milliseconds. Energetically low-lying electronic states were measured for different isotopically pure RaF molecules using collinear resonance ionisation at the ISOLDE ion-beam facility at CERN. Our results provide evidence of the existence of a suitable laser-cooling scheme for these molecules and represent a key step towards high-precision studies in these systems. Our findings will enable further studies of short-lived radioactive molecules for fundamental physics research.

5.
J Hosp Infect ; 103(2): 151-155, 2019 Oct.
Article in English | MEDLINE | ID: mdl-30995491

ABSTRACT

Antimicrobial-resistant Gram-negative bacteria are a major cause of morbidity and mortality in hospitalized neonates in South and South-East Asia. This study aimed to determine the dynamics of colonization with antimicrobial-resistant Gram-negative bacteria amongst patients in a neonatal intensive care unit (NICU) in Thailand. From 97 enrolled patients, 52% were colonized by an extended-spectrum ß-lactamase (ESBL) organism at some point during their stay and 64% were colonized by a carbapenem-resistant organism. Rapid acquisition of ESBL-positive and carbapenem-resistant organisms was found. Once colonized with an antibiotic-resistant organism, patients remained colonized for the remainder of their NICU stay.


Subject(s)
Carrier State/epidemiology , Drug Resistance, Bacterial , Gram-Negative Bacteria/drug effects , Gram-Negative Bacteria/isolation & purification , Gram-Negative Bacterial Infections/epidemiology , Intensive Care Units, Neonatal , Carrier State/microbiology , Female , Gram-Negative Bacterial Infections/microbiology , Humans , Infant , Infant, Newborn , Longitudinal Studies , Male , Thailand/epidemiology , beta-Lactamases/genetics
6.
J Hosp Infect ; 100(2): 165-175, 2018 Oct.
Article in English | MEDLINE | ID: mdl-29775628

ABSTRACT

BACKGROUND: Multi-modal interventions are effective in increasing hand hygiene (HH) compliance among healthcare workers, but it is not known whether such interventions are cost-effective outside high-income countries. AIM: To evaluate the cost-effectiveness of multi-modal hospital interventions to improve HH compliance in a middle-income country. METHODS: Using a conservative approach, a model was developed to determine whether reductions in meticillin-resistant Staphylococcus aureus bloodstream infections (MRSA-BSIs) alone would make HH interventions cost-effective in intensive care units (ICUs). Transmission dynamic and decision analytic models were combined to determine the expected impact of HH interventions on MRSA-BSI incidence and evaluate their cost-effectiveness. A series of sensitivity analyses and hypothetical scenarios making different assumptions about transmissibility were explored to generalize the findings. FINDINGS: Interventions increasing HH compliance from a 10% baseline to ≥20% are likely to be cost-effective solely through reduced MRSA-BSI. Increasing compliance from 10% to 40% was estimated to cost US$2515 per 10,000 bed-days with 3.8 quality-adjusted life-years (QALYs) gained in a paediatric ICU (PICU) and US$1743 per 10,000 bed-days with 3.7 QALYs gained in an adult ICU. If baseline compliance is not >20%, the intervention is always cost-effective even with only a 10% compliance improvement. CONCLUSION: Effective multi-modal HH interventions are likely to be cost-effective due to preventing MRSA-BSI alone in ICU settings in middle-income countries where baseline compliance is typically low. Where compliance is higher, the cost-effectiveness of interventions to improve it further will depend on the impact on hospital-acquired infections other than MRSA-BSI.


Subject(s)
Behavior Therapy/methods , Cost-Benefit Analysis , Cross Infection/prevention & control , Guideline Adherence/trends , Hand Hygiene/trends , Health Personnel , Staphylococcal Infections/prevention & control , Behavior Therapy/economics , Cross Infection/economics , Developing Countries , Disease Transmission, Infectious/economics , Disease Transmission, Infectious/prevention & control , Hospitals , Humans , Incidence , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Staphylococcal Infections/economics , Staphylococcal Infections/microbiology
7.
J Hosp Infect ; 95(3): 245-252, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27658666

ABSTRACT

BACKGROUND: Meticillin-resistant Staphylococcus aureus (MRSA) is frequently endemic in healthcare settings and may be transmitted by person-to-person spread. Asymptomatic MRSA carriers are potential, unsuspected sources for transmission and some of them may be identified by admission screening. AIM: To assess whether rapid point-of-care screening (POCS) for MRSA at hospital admission may be associated with a reduction in MRSA acquisition rates when compared with slower laboratory-based methods. METHODS: A cluster-randomized cross-over trial was conducted in four admission wards of an acute London tertiary care hospital. Polymerase chain reaction-based POCS screening was compared with conventional culture screening. Patients were screened on ward admission and discharge, and the MRSA acquisition rate on the admission wards was calculated as the primary outcome measure. RESULTS: In all, 10,017 patients were included; 4978 in the control arm, 5039 in the POCS arm. The MRSA carriage rate on admission was 1.7%. POCS reduced the median reporting time from 40.4 to 3.7 h (P < 0.001). MRSA was acquired on the admission wards by 23 (0.46%) patients in the control arm and by 24 (0.48%) in the intervention arm, acquisition rates of 5.39 and 4.60 per 1000 days respectively. After taking account of predefined confounding factors, the adjusted incidence rate ratio (IRR) for change in trend for MRSA acquisition was 0.961 (95% confidence interval: 0.766-1.206). The adjusted IRR for step change for MRSA acquisition was 0.98 (0.304-3.162). CONCLUSION: POCS produces a significantly faster result but has no effect on MRSA acquisition on admission wards compared with culture screening. Where compliance with infection prevention and control is high and MRSA carriage is low, POCS has no additional impact on MRSA acquisition rates over the first one to four days of admission compared with conventional culture screening.


Subject(s)
Carrier State/diagnosis , Diagnostic Tests, Routine/methods , Mass Screening/methods , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Point-of-Care Systems , Staphylococcal Infections/diagnosis , Adult , Aged , Bacteriological Techniques/methods , Carrier State/microbiology , Cross-Over Studies , Female , Humans , London , Male , Middle Aged , Polymerase Chain Reaction , Staphylococcal Infections/microbiology , Tertiary Care Centers , Time Factors
8.
Phys Rev Lett ; 117(7): 073202, 2016 Aug 12.
Article in English | MEDLINE | ID: mdl-27563960

ABSTRACT

We report experiments in which positronium (Ps) atoms were guided using inhomogeneous electric fields. Ps atoms in Rydberg-Stark states with principal quantum number n=10 and electric dipole moments up to 610 D were prepared via two-color two-photon optical excitation in the presence of a 670 V cm^{-1} electric field. The Ps atoms were created at the entrance of a 0.4 m long electrostatic quadrupole guide, and were detected at the end of the guide via annihilation gamma radiation. When the lasers were tuned to excite low-field-seeking Stark states, a fivefold increase in the number of atoms reaching the end of the guide was observed, whereas no signal was detected when high-field-seeking states were produced. The data are consistent with the calculated geometrical guide acceptance.

9.
Phys Rev Lett ; 115(18): 183401, 2015 Oct 30.
Article in English | MEDLINE | ID: mdl-26565466

ABSTRACT

We show that the annihilation dynamics of excited positronium (Ps) atoms can be controlled using parallel electric and magnetic fields. To achieve this, Ps atoms were optically excited to n=2 sublevels in fields that were adjusted to control the amount of short-lived and long-lived character of the resulting mixed states. Inclusion of the former offers a practical approach to detection via annihilation radiation, whereas the increased lifetimes due to the latter can be exploited to optimize resonance-enhanced two-photon excitation processes (e.g., 1^{3}S→2^{3}P→nS/nD), either by minimizing losses through intermediate state decay, or by making it possible to separate the excitation laser pulses in time. In addition, photoexcitation of mixed states with a 2^{3}S_{1} component represents an efficient route to producing long-lived pure 2^{3}S_{1} atoms via single-photon excitation.

10.
Rev Sci Instrum ; 86(10): 103101, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26520934

ABSTRACT

We describe a pulsed positron beam that is optimised for positronium (Ps) laser-spectroscopy experiments. The system is based on a two-stage Surko-type buffer gas trap that produces 4 ns wide pulses containing up to 5 × 10(5) positrons at a rate of 0.5-10 Hz. By implanting positrons from the trap into a suitable target material, a dilute positronium gas with an initial density of the order of 10(7) cm(-3) is created in vacuum. This is then probed with pulsed (ns) laser systems, where various Ps-laser interactions have been observed via changes in Ps annihilation rates using a fast gamma ray detector. We demonstrate the capabilities of the apparatus and detection methodology via the observation of Rydberg positronium atoms with principal quantum numbers ranging from 11 to 22 and the Stark broadening of the n = 2 → 11 transition in electric fields.

11.
Phys Rev Lett ; 114(17): 173001, 2015 May 01.
Article in English | MEDLINE | ID: mdl-25978227

ABSTRACT

Rydberg positronium (Ps) atoms have been prepared in selected Stark states via two-step (1s→2p→nd/ns) optical excitation. Two methods have been used to achieve Stark-state selection: a field ionization filter that transmits the outermost states with positive Stark shifts, and state-selected photoexcitation in a strong electric field. The former is demonstrated for n=17 and 18 while the latter is performed for n=11 in a homogeneous electric field of 1.9 kV/cm. The observed spectral intensities and their dependence on the polarization of the laser radiation are in agreement with calculations that include the perturbations of the intermediate n=2 manifold. Our results pave the way for the generation of Rydberg Ps atoms with large electric dipole moments that are required for the realization of schemes to control their motion using inhomogeneous electric fields, an essential feature of some proposed Ps free-fall measurements requiring focused beams of long-lived atoms.

12.
Nat Commun ; 5: 5208, 2014 Oct 10.
Article in English | MEDLINE | ID: mdl-25302567

ABSTRACT

Plasmids are important drivers of bacterial evolution, but it is challenging to understand how plasmids persist over the long term because plasmid carriage is costly. Classical models predict that horizontal transfer is necessary for plasmid persistence, but recent work shows that almost half of plasmids are non-transmissible. Here we use a combination of mathematical modelling and experimental evolution to investigate how a costly, non-transmissible plasmid, pNUK73, can be maintained in populations of Pseudomonas aeruginosa. Compensatory adaptation increases plasmid stability by eliminating the cost of plasmid carriage. However, positive selection for plasmid-encoded antibiotic resistance is required to maintain the plasmid by offsetting reductions in plasmid frequency due to segregational loss. Crucially, we show that compensatory adaptation and positive selection reinforce each other's effects. Our study provides a new understanding of how plasmids persist in bacterial populations, and it helps to explain why resistance can be maintained after antibiotic use is stopped.


Subject(s)
Plasmids/genetics , Pseudomonas aeruginosa/genetics , Adaptation, Physiological , Anti-Bacterial Agents/pharmacology , Gene Transfer, Horizontal , Plasmids/metabolism , Pseudomonas aeruginosa/drug effects , Pseudomonas aeruginosa/physiology
14.
J Hosp Infect ; 85(1): 33-44, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23911111

ABSTRACT

BACKGROUND: The benefits of universal meticillin-resistant Staphylococcus aureus (MRSA) admission screening, compared with screening targeted patient groups and the additional impact of discharge screening, are uncertain. AIMS: To quantify the impact of MRSA screening plus decolonization treatment on MRSA infection rates. To compare universal with targeted screening policies, and to evaluate the additional impact of screening and decolonization on discharge. METHODS: A stochastic, individual-based model of MRSA transmission was developed that included patient movements between general medical and intensive care unit (ICU) wards, and between the hospital and community, informed by 18 months of individual patient data from a 900-bed tertiary care hospital. We simulated the impact of universal and targeted [for ICU, acute care of the elderly (ACE) or readmitted patients] MRSA screening and decolonization policies, both on admission and discharge. FINDINGS: Universal admission screening plus decolonization resulted in 77% (95% confidence interval: 76-78) reduction in MRSA infections over 10 years. Screening only ACE specialty or ICU patients yielded 62% (61-63) and 66% (65-67) reductions, respectively. Targeted policies reduced the number of screens by up to 95% and courses of decolonization by 96%. In addition to screening on admission, screening on discharge had little impact, with a maximum 7% additional reduction in infection. CONCLUSIONS: Compared with universal screening, targeted screening substantially reduced the amount of screening and decolonization required to achieve only 12% lower reduction in infection. Targeted screening and decolonization could lower the risk of resistance emerging as well as offer a more efficient use of resources.


Subject(s)
Carrier State/diagnosis , Carrier State/drug therapy , Cross Infection/prevention & control , Mass Screening/methods , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Staphylococcal Infections/diagnosis , Staphylococcal Infections/drug therapy , Carrier State/microbiology , Diagnostic Tests, Routine/methods , Disease Transmission, Infectious/prevention & control , Health Services Research , Humans , Infection Control/methods , Staphylococcal Infections/microbiology , Staphylococcal Infections/transmission
15.
J Hosp Infect ; 79(3): 222-6, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21763033

ABSTRACT

Antibiotics and antiseptics have the potential to influence carriage and transmission of meticillin-resistant Staphylococcus aureus (MRSA), although effects are likely to be complex, particularly in a setting where multiple agents are used. Here admission and weekly MRSA screens and daily antibiotic and antiseptic prescribing data from 544 MRSA carriers on an intensive care unit (ICU) are used to determine the effect of these agents on short-term within-host MRSA carriage dynamics. Longitudinal data were analysed using Markov models allowing patients to move between two states: MRSA positive (detectable MRSA carriage) and MRSA negative (no detectable carriage). The effect of concurrent systemic antibiotic and topical chlorhexidine (CHX) on movement between these states was assessed. CHX targeted to MRSA screen carriage sites increased transition from culture positive to negative and there was also weaker evidence that it decreased subsequent transition from negative back to positive. In contrast, there was only weak and inconsistent evidence that any antibiotic influenced transition in either direction. For example, whereas univariate analysis found quinolones to be strongly associated with both increased risk of losing and then reacquiring MRSA carriage over time intervals of one day, no effect was seen with weekly models. Similar studies are required to determine the generalisability of these findings.


Subject(s)
Anti-Bacterial Agents/administration & dosage , Anti-Infective Agents, Local/administration & dosage , Carrier State/drug therapy , Chlorhexidine/administration & dosage , Methicillin-Resistant Staphylococcus aureus/drug effects , Staphylococcal Infections/drug therapy , Administration, Topical , Anti-Bacterial Agents/pharmacology , Anti-Infective Agents, Local/pharmacology , Carrier State/microbiology , Chlorhexidine/pharmacology , Culture Media , Humans , Intensive Care Units , Markov Chains , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Nasal Cavity/microbiology , Odds Ratio , Staphylococcal Infections/microbiology , Treatment Outcome
16.
J Evol Biol ; 23(11): 2346-55, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20825540

ABSTRACT

Many organisms modify their physiological functions by acclimating to changes in their environment. Recent studies of thermal physiology have been influenced by verbal models that fail to consider the selective advantage of acclimation and thus make no predictions about variation in acclimation capacity. We used a quantitative model of optimal plasticity to generate predictions about the capacity of Drosophila melanogaster to acclimate to developmental temperature. This model predicts that the ability to acclimate thermal sensitivity should evolve when temperature varies greatly among generations. Based on the model, we expected that flies from the highly seasonal environment of New Jersey would acclimate thermal sensitivity more than would flies from the less seasonal environment of Florida. When raised at constant and fluctuating temperatures, flies from these populations failed to adjust their thermal optima in the way predicted by the model, suggesting that current assumptions about functional and genetic constraints should be reconsidered.


Subject(s)
Acclimatization/physiology , Drosophila melanogaster/physiology , Models, Biological , Temperature , Analysis of Variance , Animals , Female , Fertility/physiology , Florida , New Jersey
17.
N Engl J Med ; 360(1): 20-31, 2009 Jan 01.
Article in English | MEDLINE | ID: mdl-19118302

ABSTRACT

BACKGROUND: Selective digestive tract decontamination (SDD) and selective oropharyngeal decontamination (SOD) are infection-prevention measures used in the treatment of some patients in intensive care, but reported effects on patient outcome are conflicting. METHODS: We evaluated the effectiveness of SDD and SOD in a crossover study using cluster randomization in 13 intensive care units (ICUs), all in The Netherlands. Patients with an expected duration of intubation of more than 48 hours or an expected ICU stay of more than 72 hours were eligible. In each ICU, three regimens (SDD, SOD, and standard care) were applied in random order over the course of 6 months. Mortality at day 28 was the primary end point. SDD consisted of 4 days of intravenous cefotaxime and topical application of tobramycin, colistin, and amphotericin B in the oropharynx and stomach. SOD consisted of oropharyngeal application only of the same antibiotics. Monthly point-prevalence studies were performed to analyze antibiotic resistance. RESULTS: A total of 5939 patients were enrolled in the study, with 1990 assigned to standard care, 1904 to SOD, and 2045 to SDD; crude mortality in the groups at day 28 was 27.5%, 26.6%, and 26.9%, respectively. In a random-effects logistic-regression model with age, sex, Acute Physiology and Chronic Health Evaluation (APACHE II) score, intubation status, and medical specialty used as covariates, odds ratios for death at day 28 in the SOD and SDD groups, as compared with the standard-care group, were 0.86 (95% confidence interval [CI], 0.74 to 0.99) and 0.83 (95% CI, 0.72 to 0.97), respectively. CONCLUSIONS: In an ICU population in which the mortality rate associated with standard care was 27.5% at day 28, the rate was reduced by an estimated 3.5 percentage points with SDD and by 2.9 percentage points with SOD. (Controlled Clinical Trials number, ISRCTN35176830.)


Subject(s)
Bacteremia/prevention & control , Cross Infection/prevention & control , Decontamination , Gastrointestinal Tract/microbiology , Oropharynx/microbiology , APACHE , Aged , Anti-Bacterial Agents/therapeutic use , Bacteremia/epidemiology , Critical Illness/mortality , Critical Illness/therapy , Cross Infection/epidemiology , Cross-Over Studies , Female , Gram-Negative Bacteria/isolation & purification , Humans , Infection Control/methods , Intensive Care Units , Logistic Models , Male , Middle Aged , Respiration, Artificial
19.
J R Soc Interface ; 4(15): 745-54, 2007 Aug 22.
Article in English | MEDLINE | ID: mdl-17360254

ABSTRACT

BACKGROUND: Antibiotic-resistant nosocomial pathogens can arise in epidemic clusters or sporadically. Genotyping is commonly used to distinguish epidemic from sporadic vancomycin-resistant enterococci (VRE). We compare this to a statistical method to determine the transmission characteristics of VRE. METHODS AND FINDINGS: A structured continuous-time hidden Markov model (HMM) was developed. The hidden states were the number of VRE-colonized patients (both detected and undetected). The input for this study was weekly point-prevalence data; 157 weeks of VRE prevalence. We estimated two parameters: one to quantify the cross-transmission of VRE and the other to quantify the level of VRE colonization from sporadic sources. We compared the results to those obtained by concomitant genotyping and phenotyping. We estimated that 89% of transmissions were due to ward cross-transmission while 11% were sporadic. Genotyping found that 90% had identical glycopeptide resistance genes and 84% were identical or nearly identical on pulsed-field gel electrophoresis (PFGE). There was some evidence, based on model selection criteria, that the cross-transmission parameter changed throughout the study period. The model that allowed for a change in transmission just prior to the outbreak and again at the peak of the outbreak was superior to other models. This model estimated that cross-transmission increased at week 120 and declined after week 135, coinciding with environmental decontamination. SIGNIFICANCE: We found that HMMs can be applied to serial prevalence data to estimate the characteristics of acquisition of nosocomial pathogens and distinguish between epidemic and sporadic acquisition. This model was able to estimate transmission parameters despite imperfect detection of the organism. The results of this model were validated against PFGE and glycopeptide resistance genotype data and produced very similar results. Additionally, HMMs can provide information about unobserved events such as undetected colonization.


Subject(s)
Disease Outbreaks , Enterococcus faecalis/metabolism , Enterococcus faecium/metabolism , Gram-Positive Bacterial Infections/epidemiology , Markov Chains , Vancomycin Resistance , Algorithms , Cluster Analysis , Disease Transmission, Infectious , Electrophoresis, Gel, Pulsed-Field , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/transmission , Humans , Models, Statistical
20.
J Antimicrob Chemother ; 59(5): 833-40, 2007 May.
Article in English | MEDLINE | ID: mdl-17387116

ABSTRACT

The quality of research in hospital epidemiology (infection control) must be improved to be robust enough to influence policy and practice. In order to raise the standards of research and publication, a CONSORT equivalent for these largely quasi-experimental studies has been prepared by the authors of two relevant systematic reviews, following consultation with learned societies, editors of journals and researchers. It consists of a 22 item checklist, and a summary table. The emphasis is on transparency to improve the quality of reporting and on the use of appropriate statistical techniques. The statement has been endorsed by a number of professional special interest groups and societies. Like CONSORT, ORION should be considered a 'work in progress', which requires ongoing dialogue for successful promotion and dissemination. The statement is therefore offered for further public discussion. Journals and research councils are strongly recommended to incorporate it into their submission and reviewing processes. Feedback to the authors is encouraged and the statement will be revised in 2 years.


Subject(s)
Cross Infection/prevention & control , Disease Notification/standards , Disease Outbreaks/prevention & control , Guidelines as Topic , Infection Control/standards , Disease Notification/statistics & numerical data , Humans , Infection Control/statistics & numerical data
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