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1.
Glob Change Biol Bioenergy ; 16(1): e13114, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38711671

ABSTRACT

Perennial bioenergy crops are a key tool in decarbonizing global energy systems, but to ensure the efficient use of land resources, it is essential that yields and crop longevity are maximized. Remedial shallow surface tillage is being explored in commercial Miscanthus plantations as an approach to reinvigorate older crops and to rectify poor establishment, improving yields. There are posited links, however, between tillage and losses in soil carbon (C) via increased ecosystem C fluxes to the atmosphere. As Miscanthus is utilized as an energy crop, changes in field C fluxes need to be assessed as part of the C balance of the crop. Here, for the first time, we quantify the C impacts of remedial tillage at a mature commercial Miscanthus plantation in Lincolnshire, United Kingdom. Net ecosystem C production based on eddy covariance flux observations and exported yield totalled 12.16 Mg C ha-1 over the 4.6 year period after tillage, showing the site functioned as a net sink for atmospheric carbon dioxide (CO2). There was no indication of negative tillage induced impacts on soil C stocks, with no difference 3 years post tillage in the surface (0-30 cm) or deep (0-70 cm) soil C stocks between the tilled Miscanthus field and an adjacent paired untilled Miscanthus field. Comparison to historic samples showed surface soil C stocks increased by 11.16 ± 3.91 Mg C ha-1 between pre (October 2011) and post tillage sampling (November 2016). Within the period of the study, however, the tillage did not result in the increased yields necessary to "pay back" the tillage induced yield loss. Rather the crop was effectively re-established, with progressive yield increases over the study period, mirroring expectations of newly planted sites. The overall impacts of remedial tillage will depend therefore, on the longer-term impacts on crop longevity and yields.

2.
Nature ; 593(7860): 548-552, 2021 05.
Article in English | MEDLINE | ID: mdl-33882562

ABSTRACT

Global peatlands store more carbon than is naturally present in the atmosphere1,2. However, many peatlands are under pressure from drainage-based agriculture, plantation development and fire, with the equivalent of around 3 per cent of all anthropogenic greenhouse gases emitted from drained peatland3-5. Efforts to curb such emissions are intensifying through the conservation of undrained peatlands and re-wetting of drained systems6. Here we report eddy covariance data for carbon dioxide from 16 locations and static chamber measurements for methane from 41 locations in the UK and Ireland. We combine these with published data from sites across all major peatland biomes. We find that the mean annual effective water table depth (WTDe; that is, the average depth of the aerated peat layer) overrides all other ecosystem- and management-related controls on greenhouse gas fluxes. We estimate that every 10 centimetres of reduction in WTDe could reduce the net warming impact of CO2 and CH4 emissions (100-year global warming potentials) by the equivalent of at least 3 tonnes of CO2 per hectare per year, until WTDe is less than 30 centimetres. Raising water levels further would continue to have a net cooling effect until WTDe is within 10 centimetres of the surface. Our results suggest that greenhouse gas emissions from peatlands drained for agriculture could be greatly reduced without necessarily halting their productive use. Halving WTDe in all drained agricultural peatlands, for example, could reduce emissions by the equivalent of over 1 per cent of global anthropogenic emissions.

3.
Biochim Biophys Acta Mol Cell Res ; 1866(9): 1475-1486, 2019 09.
Article in English | MEDLINE | ID: mdl-31220477

ABSTRACT

Sphingosine kinase 1 (SK1) converts sphingosine to the bioactive lipid sphingosine 1-phosphate (S1P). S1P binds to G-protein-coupled receptors (S1PR1-5) to regulate cellular events, including Ca2+ signaling. The SK1/S1P axis and Ca2+ signaling both play important roles in health and disease. In this respect, Ca2+ microdomains at the mitochondria-associated endoplasmic reticulum (ER) membranes (MAMs) are of importance in oncogenesis. Mitofusin 2 (MFN2) modulates ER-mitochondria contacts, and dysregulation of MFN2 is associated with malignancies. We show that overexpression of SK1 augments agonist-induced Ca2+ release from the ER resulting in increased mitochondrial matrix Ca2+. Also, overexpression of SK1 induces MFN2 fragmentation, likely through increased calpain activity. Further, expressing putative calpain-cleaved MFN2 N- and C-terminal fragments increases mitochondrial matrix Ca2+ during agonist stimulation, mimicking the SK1 overexpression in cells. Moreover, SK1 overexpression enhances cellular respiration and cell migration. Thus, SK1 regulates MFN2 fragmentation resulting in increased mitochondrial Ca2+ and downstream cellular effects.


Subject(s)
GTP Phosphohydrolases/metabolism , Mitochondria/metabolism , Mitochondrial Proteins/metabolism , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Calcium/metabolism , Cell Movement , Cell Proliferation , Endoplasmic Reticulum/metabolism , HeLa Cells , Humans , Lysophospholipids , Mitochondria/pathology , Signal Transduction , Sphingosine/analogs & derivatives , Sphingosine-1-Phosphate Receptors
4.
Transl Psychiatry ; 3: e338, 2013 Dec 17.
Article in English | MEDLINE | ID: mdl-24346136

ABSTRACT

Adolescence is a period of heightened susceptibility to psychiatric disorders of medial prefrontal cortex (mPFC) dysfunction and cognitive impairment. mPFC dopamine (DA) projections reach maturity only in early adulthood, when their control over cognition becomes fully functional. The mechanisms governing this protracted and unique development are unknown. Here we identify dcc as the first DA neuron gene to regulate mPFC connectivity during adolescence and dissect the mechanisms involved. Reduction or loss of dcc from DA neurons by Cre-lox recombination increased mPFC DA innervation. Underlying this was the presence of ectopic DA fibers that normally innervate non-cortical targets. Altered DA input changed the anatomy and electrophysiology of mPFC circuits, leading to enhanced cognitive flexibility. All phenotypes only emerged in adulthood. Using viral Cre, we demonstrated that dcc organizes mPFC wiring specifically during adolescence. Variations in DCC may determine differential predisposition to mPFC disorders in humans. Indeed, DCC expression is elevated in brains of antidepressant-free subjects who committed suicide.


Subject(s)
Dopaminergic Neurons/metabolism , Genes, DCC/physiology , Mental Disorders/genetics , Prefrontal Cortex/growth & development , Adolescent , Adolescent Development/physiology , Animals , Case-Control Studies , Genetic Predisposition to Disease , Haploinsufficiency , Humans , Male , Mice , Neural Pathways/growth & development , Neural Pathways/metabolism , Prefrontal Cortex/cytology , Prefrontal Cortex/metabolism , Self-Injurious Behavior/genetics , Suicide
5.
Nucleic Acids Res ; 40(13): 6109-21, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22453275

ABSTRACT

Mitochondrial ribosomes and translation factors co-purify with mitochondrial nucleoids of human cells, based on affinity protein purification of tagged mitochondrial DNA binding proteins. Among the most frequently identified proteins were ATAD3 and prohibitin, which have been identified previously as nucleoid components, using a variety of methods. Both proteins are demonstrated to be required for mitochondrial protein synthesis in human cultured cells, and the major binding partner of ATAD3 is the mitochondrial ribosome. Altered ATAD3 expression also perturbs mtDNA maintenance and replication. These findings suggest an intimate association between nucleoids and the machinery of protein synthesis in mitochondria. ATAD3 and prohibitin are tightly associated with the mitochondrial membranes and so we propose that they support nucleic acid complexes at the inner membrane of the mitochondrion.


Subject(s)
Mitochondria/genetics , Mitochondrial Proteins/biosynthesis , Nucleoproteins/physiology , Protein Biosynthesis , ATPases Associated with Diverse Cellular Activities , Adenosine Triphosphatases/metabolism , Cell Cycle Proteins/physiology , Cell Line, Tumor , DNA, Mitochondrial/metabolism , HEK293 Cells , Humans , Membrane Proteins/metabolism , Mitochondrial Proteins/metabolism , Mitochondrial Proteins/physiology , Nuclear Proteins/physiology , Prohibitins , RNA/analysis , RNA/isolation & purification , RNA, Messenger/analysis , RNA, Mitochondrial , Repressor Proteins/physiology , Ribosomes/metabolism
6.
Nucleic Acids Res ; 40(13): 6097-108, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22447445

ABSTRACT

The bacterial homologue of C4orf14, YqeH, has been linked to assembly of the small ribosomal subunit. Here, recombinant C4orf14 isolated from human cells, co-purified with the small, 28S subunit of the mitochondrial ribosome and the endogenous protein co-fractionated with the 28S subunit in sucrose gradients. Gene silencing of C4orf14 specifically affected components of the small subunit, leading to decreased protein synthesis in the organelle. The GTPase of C4orf14 was critical to its interaction with the 28S subunit, as was GTP. Therefore, we propose that C4orf14, with bound GTP, binds to components of the 28S subunit facilitating its assembly, and GTP hydrolysis acts as the release mechanism. C4orf14 was also found to be associated with human mitochondrial nucleoids, and C4orf14 gene silencing caused mitochondrial DNA depletion. In vitro C4orf14 is capable of binding to DNA. The association of C4orf14 with mitochondrial translation factors and the mitochondrial nucleoid suggests that the 28S subunit is assembled at the mitochondrial nucleoid, enabling the direct transfer of messenger RNA from the nucleoid to the ribosome in the organelle.


Subject(s)
DNA, Mitochondrial/metabolism , GTP Phosphohydrolases/metabolism , Mitochondria/genetics , Ribosome Subunits, Small, Eukaryotic/metabolism , Cell Line, Tumor , GTP Phosphohydrolases/chemistry , GTP Phosphohydrolases/isolation & purification , Guanosine Triphosphate/metabolism , HEK293 Cells , Humans
7.
J Comp Neurol ; 518(16): 3237-53, 2010 Aug 15.
Article in English | MEDLINE | ID: mdl-20575069

ABSTRACT

In the adult rodent forebrain, astrocyte-like neural stem cells reside within the subventricular zone (SVZ) and give rise to progenitors and neuroblasts, which then undergo chain migration along the rostral migratory stream (RMS) to the olfactory bulb, where they mature into fully functional interneurons. Neurogenesis also occurs in the adult human SVZ, where neural precursors similar to the rodent astrocyte-like stem cell and neuroblast have been identified. A migratory pathway equivalent to the rodent RMS has also recently been described for the human forebrain. In the embryo, the guidance receptor neogenin and its ligands netrin-1 and RGMa regulate important neurogenic processes, including differentiation and migration. We show in this study that neogenin is expressed on neural stem cells (B cells), progenitor cells (C cells), and neuroblasts (A cells) in the adult mouse SVZ and RMS. We also show that netrin-1 and RGMa are ideally placed within the neurogenic niche to activate neogenin function. Moreover, we find that neogenin and RGMa are also present in the neurogenic regions of the human adult forebrain. We show that neogenin is localized to cells displaying stem cell (B cell)-like characteristics within the adult human SVZ and RMS and that RGMa is expressed by the same or a closely apposed cell population. This study supports the hypothesis that, as in the embryo, neogenin regulates fundamental signalling pathways important for neurogenesis in the adult mouse and human forebrain.


Subject(s)
Membrane Proteins/metabolism , Prosencephalon/anatomy & histology , Prosencephalon/metabolism , Receptors, Cell Surface/metabolism , Adult , Aged , Aged, 80 and over , Animals , Cell Movement , Female , GPI-Linked Proteins , Humans , Male , Membrane Proteins/genetics , Mice , Mice, Inbred C57BL , Middle Aged , Nerve Growth Factors/genetics , Nerve Growth Factors/metabolism , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Netrin Receptors , Netrin-1 , Neurogenesis , Prosencephalon/embryology , Prosencephalon/growth & development , Receptors, Cell Surface/genetics , Stem Cell Niche , Stem Cells/cytology , Stem Cells/metabolism , Tumor Suppressor Proteins/genetics , Tumor Suppressor Proteins/metabolism , Young Adult
8.
Neuroscience ; 157(3): 637-43, 2008 Dec 02.
Article in English | MEDLINE | ID: mdl-18854206

ABSTRACT

At the optic chiasm retinal fibers either cross the midline, or remain uncrossed. Here we trace hemispheric pathways through the marmoset chiasm and show that fibers from the lateral optic nerve pass directly toward the ipsilateral optic tract without any significant change in fiber order and without approaching the midline, while those from medial regions of the nerve decussate directly. Anterograde labeling from one eye shows that the two hemispheric pathways remain segregated through the proximal nerve and chiasm with the uncrossed confined laterally. Retrograde labeling from the optic tract confirms this. This clearly demonstrates that hemispheric pathways are segregated through the primate chiasm. Previous chiasmatic studies have been undertaken mainly on rodents and ferrets. In these species there is a major change in fiber order pre-chiasmatically, where crossed and uncrossed fibers mix, reflecting their embryological history when all fibers approach the midline prior to their commitment to innervate either hemisphere. This pattern was thought to be common to placental mammals. In marsupials there is no change in fiber order and uncrossed fibers remain confined laterally through nerve and chiasm, again, reflecting their developmental history when all uncrossed fibers avoid the midline. Recently it has been shown that this distinction is not a true dichotomy between placental mammals and marsupials, as fiber order in tree shrews and humans mirrors the marsupial pattern. Architectural differences in the mature chiasm probably reflect different developmental mechanisms regulating pathway choice. Our results therefore suggest that both the organization and development of the primate optic chiasm differ markedly from that revealed in rodents and carnivores.


Subject(s)
Brain Mapping , Functional Laterality/physiology , Optic Chiasm/anatomy & histology , Visual Pathways/anatomy & histology , Amino Acids/metabolism , Animals , Callithrix , Collagen/metabolism , Horseradish Peroxidase/metabolism , Tritium/metabolism , Visual Pathways/physiology
9.
Brain Res Bull ; 70(4-6): 270-7, 2006 Oct 16.
Article in English | MEDLINE | ID: mdl-17027762

ABSTRACT

Previous studies have suggested that nocturnal and diurnal species of rodents differ in their circadian responses to light including phase shifts and early gene expression. Rhabdomys pumilio, the four-striped field mouse, is diurnal both in nature and in the laboratory. We studied in this species the response of the suprachiasmatic nucleus (SCN) to light stimuli at different time periods using light-induced expression of Fos as marker of neuronal activity. Fos induction in the SCN was investigated using immunohistochemistry and quantitative image analysis. The animals were exposed to a 15 min light pulse with monochromatic green light at different circadian times throughout a 24-h cycle. Animals maintained in constant darkness served as controls. R. pumilio exhibited an endogenous Fos rhythm in the SCN during constant darkness with highest expression during the subjective day at circadian time (CT) 2 and CT10. Photic stimulation resulted in significant Fos induction in the SCN at CT6, CT14, CT18 and CT22, compared to controls kept in constant darkness, with a peak of expression at CT22, i.e. during late subjective night, mainly due to expression in the ventral SCN. In tract tracing experiments based on the use of cholera toxin subunit B, we found that retinal fibres innervate mainly the contralateral ventral SCN. The intergeniculate leaflet received bilateral retinal innervation with overlap between ipsilateral and contralateral fibres. Altogether the data show that the rodent R. pumilio is a unique diurnal model for chronobiological studies.


Subject(s)
Gene Expression/radiation effects , Light , Oncogene Proteins v-fos/metabolism , Retina/physiology , Suprachiasmatic Nucleus/radiation effects , Animals , Circadian Rhythm/physiology , Functional Laterality/physiology , Immunohistochemistry/methods , Male , Mice , Photic Stimulation/methods , Retina/radiation effects , Time Factors , Visual Pathways/anatomy & histology , Visual Pathways/radiation effects
10.
Neuroscience ; 142(3): 703-16, 2006 Oct 27.
Article in English | MEDLINE | ID: mdl-16908105

ABSTRACT

Many studies have demonstrated a role for netrin-1-deleted in colorectal cancer (DCC) interactions in both axon guidance and neuronal migration. Neogenin, a member of the DCC receptor family, has recently been shown to be a chemorepulsive axon guidance receptor for the repulsive guidance molecule (RGM) family of guidance cues [Rajagopalan S, Deitinghoff L, Davis D, Conrad S, Skutella T, Chedotal A, Mueller B, Strittmatter S (2004) Neogenin mediates the action of repulsive guidance molecule. Nat Cell Biol 6:755-762]. Here we show that neogenin is present on neural progenitors, including neurogenic radial glia, in the embryonic mouse forebrain suggesting that neogenin expression is a hallmark of neural progenitor populations. Neogenin-positive progenitors were isolated from embryonic day 14.5 forebrain using flow cytometry and cultured as neurospheres. Neogenin-positive progenitors gave rise to neurospheres displaying a high proliferative and neurogenic potential. In contrast, neogenin-negative forebrain cells did not produce long-term neurosphere cultures and did not possess a significant neurogenic potential. These observations argue strongly for a role for neogenin in neural progenitor biology. In addition, we also observed neogenin on parvalbumin- and calbindin-positive interneuron neuroblasts that were migrating through the medial and lateral ganglionic eminences, suggesting a role for neogenin in tangential migration. Therefore, neogenin may be a multi-functional receptor regulating both progenitor activity and neuroblast migration in the embryonic forebrain.


Subject(s)
Cell Movement/physiology , Gene Expression Regulation, Developmental/physiology , Membrane Proteins/metabolism , Neurons/physiology , Prosencephalon/cytology , Stem Cells/physiology , Animals , Blastomeres/physiology , Blotting, Western/methods , Cells, Cultured , Embryo, Mammalian , Excitatory Amino Acid Transporter 1/metabolism , Flow Cytometry/methods , Immunoprecipitation/methods , Intermediate Filament Proteins/metabolism , Mice , Microtubule-Associated Proteins/metabolism , Nerve Tissue Proteins/metabolism , Nestin , Proliferating Cell Nuclear Antigen/metabolism , Tubulin/metabolism
11.
Neuroscience ; 133(2): 555-60, 2005.
Article in English | MEDLINE | ID: mdl-15878641

ABSTRACT

Mole-rats are strictly subterranean rodents that are rarely exposed to environmental light. They are well adapted to their environment and have reduced eyes and a severely regressed visual system. It has been shown, however, that mole-rats do exhibit endogenous circadian rhythms that can be entrained, suggesting an intact and functional circadian system. To determine whether light is the entraining agent in these animals, Fos expression in response to light pulses at different circadian times was investigated to obtain phase response curves. Light is integrated effectively in the suprachiasmatic nucleus of the Cape mole-rat (Georychus capensis), and Fos expression is gated according to the phase of the circadian clock. The Fos response in the Cape mole-rat was comparable to that of aboveground rodents. In contrast, the highveld mole-rat (Cryptomys hottentotus pretoriae) was less sensitive to light and did not show a selective Fos response according to the phase of the circadian cycle. Social species appear to be less sensitive to light than their solitary counterparts, which compares well with results from locomotor activity studies.


Subject(s)
Circadian Rhythm/radiation effects , Light , Oncogene Proteins v-fos/metabolism , Social Behavior , Suprachiasmatic Nucleus/radiation effects , Analysis of Variance , Animals , Circadian Rhythm/physiology , Diagnostic Imaging/methods , Fluorescent Antibody Technique/methods , Gene Expression Regulation/radiation effects , Mole Rats/classification , Photic Stimulation/methods , Species Specificity , Suprachiasmatic Nucleus/metabolism , Time Factors
12.
Neuroscience ; 131(3): 671-81, 2005.
Article in English | MEDLINE | ID: mdl-15730872

ABSTRACT

DCC (deleted in colorectal cancer)-the receptor of the netrin-1 neuronal guidance factor-is expressed and is active in the central nervous system (CNS) during development, but is down-regulated during maturation. The substantia nigra contains the highest level of netrin-1 mRNA in the adult rodent brain, and corresponding mRNA for DCC has also been detected in this region but has not been localized to any particular neuron type. In this study, an antibody raised against DCC was used to determine if the protein was expressed by adult dopamine neurons, and identify their distribution and projections. Significant DCC-immunoreactivity was detected in midbrain, where it was localized to ventrally displaced A9 dopamine neurons in the substantia nigra, and ventromedial A10 dopamine neurons predominantly situated in and around the interfascicular nucleus. Strong immunoreactivity was not detected in dopamine neurons found elsewhere, or in non-dopamine-containing neurons in the midbrain. Terminal fields selectively labeled with DCC antibody corresponded to known nigrostriatal projections to the dorsolateral striatal patches and dorsomedial shell of the accumbens, and were also detected in prefrontal cortex, septum, lateral habenular and ventral pallidum. The unique distribution of DCC-immunoreactivity in adult ventral midbrain dopamine neurons suggests that netrin-1/DCC signaling could function in plasticity and remodeling previously identified in dopamine projection pathways. In particular, a recent report that DCC is regulated through the ubiquitin-proteosome system via Siah/Sina proteins, is consistent with a potential involvement in genetic and sporadic forms of Parkinson's disease.


Subject(s)
Brain/cytology , Cell Adhesion Molecules/metabolism , Dopamine/metabolism , Gene Expression Regulation/physiology , Neural Pathways/metabolism , Neurons/metabolism , Tumor Suppressor Proteins/metabolism , Animals , Brain/metabolism , Calbindins , Cell Adhesion Molecules/genetics , Cell Adhesion Molecules/immunology , DCC Receptor , Fluorescent Antibody Technique/methods , Male , Mice , Mice, Inbred C57BL , Nerve Growth Factors/metabolism , Netrin-1 , Rats , Rats, Wistar , Receptors, Cell Surface , Receptors, Opioid, mu/metabolism , S100 Calcium Binding Protein G/metabolism , Tumor Suppressor Proteins/genetics , Tumor Suppressor Proteins/immunology , Tyrosine 3-Monooxygenase/metabolism
13.
Neuroscience ; 115(4): 1323-33, 2002.
Article in English | MEDLINE | ID: mdl-12453500

ABSTRACT

The aim of this study is to characterize calbindin-positive photoreceptors and their opsin content in the retina of nocturnal prosimians (Microcebus murinus), New World monkeys (Callithrix jacchus), Old World monkeys (Macaca fascicularis), and humans. To identify the calbindin and opsin content of cones, combined multiple labeling with different fluorescent probes, antibodies directed against calbindin, short, and mid-long wavelength opsins, and lectin peanut agglutinin cytochemistry were used. With the exception of Microcebus, calbindin is present in the cones of all primates but is absent from rods. The distribution of calbindin is similar in human and macaque cones, with dense label in the inner segment, cell body, axon and cone pedicle. Cones in marmoset also show dense staining in the cell body, axon and pedicle but only light label in the inner segment. Primate cone outer segments do not contain calbindin. In the primates studied, three patterns of calbindin and opsin localization are observed. In macaque and marmoset all short and mid-long wavelength cones contain calbindin. In humans, all mid-long wavelength cones contain calbindin whereas all short wavelength cones are devoid of calbindin as confirmed by confocal microscopy. In the nocturnal prosimian Microcebus none of the mid-long or short wavelength cones contain calbindin. In addition to primates, calbindin is absent in cones of other nocturnal species but is present in cones of diurnal species suggesting a difference in the role of calbindin possibly related to the adaptational states or other photoreceptor properties.


Subject(s)
Neural Pathways/metabolism , Primates/metabolism , Retinal Cone Photoreceptor Cells/metabolism , Retinal Rod Photoreceptor Cells/metabolism , Rod Opsins/metabolism , S100 Calcium Binding Protein G/metabolism , Vision, Ocular/physiology , Adult , Aged , Animals , Axons/metabolism , Axons/ultrastructure , Calbindins , Callithrix , Cheirogaleidae , Dark Adaptation/physiology , Dendrites/metabolism , Dendrites/ultrastructure , Female , Humans , Immunohistochemistry , Macaca fascicularis , Male , Middle Aged , Neural Pathways/cytology , Peanut Agglutinin , Primates/anatomy & histology , Retinal Cone Photoreceptor Cells/cytology , Retinal Rod Photoreceptor Cells/cytology
14.
J Biol Rhythms ; 17(2): 121-36, 2002 Apr.
Article in English | MEDLINE | ID: mdl-12002159

ABSTRACT

The induction of the proto-oncogene c-fos, and its phosphoprotein product Fos, has been extensively used to study the effects of light on the circadian pacemaker in the suprachiasmatic nucleus (SCN). Experimental approaches to the quantification of Fos induction have mainly been based on immunohistochemistry and subsequent measure of Fos immunoreactivity (IR) in sections of the SCN. In this study, the authors compare several methods of quantification using optical density image analysis or counts of Fos-IR labeled cells. To assess whether optical density measures using image analysis reflect the amount of Fos in brain tissue, the authors developed standards of known concentrations of Fos protein in an agar matrix. The agar standards were sectioned and treated simultaneously with sections of the SCN from animals exposed to different levels of irradiance. Optical density was found to be proportional to the quantity of Fos in the sections, indicating that this measure accurately reflects relative levels of Fos protein induction. Quantification by optical density analysis allows an objective measure in which the various parameters, conditions of illumination, and threshold can be maintained constant throughout the analysis. Counting cells by visual observation is more subjective because threshold values cannot be precisely defined and can vary according to the observer, illumination, degree of label, and other factors. In addition, cell counts involving direct visual observation, automated cell counts, or stereological methods do not take into account the difference in the density of label between cells, thus giving equal weight to lightly or densely stained cells. These measures are more or less weakly correlated with measures of optical density and thus do not accurately reflect the amount of bound Fos protein in the tissue sections. In contrast, labeled surface area as measured by image analysis shows a linear relationship with optical density. The main outcome of this study is that computer-assisted image analysis provides an accurate and rapid method to determine the relative amount of Fos protein in the SCN and the effects of light on intracellular signaling mechanisms involved in the circadian clock.


Subject(s)
Immunohistochemistry/methods , Oncogene Proteins v-fos/metabolism , Suprachiasmatic Nucleus/metabolism , 3,3'-Diaminobenzidine , Agar , Animals , Avidin , Biotin , Cell Count , Coloring Agents , Image Interpretation, Computer-Assisted , Immunoenzyme Techniques , Male , Mice , Mice, Inbred C3H , Oncogene Proteins v-fos/chemistry , Photic Stimulation , Reference Standards , Suprachiasmatic Nucleus/chemistry , Surface Properties
15.
Neuroscience ; 105(2): 403-12, 2001.
Article in English | MEDLINE | ID: mdl-11672607

ABSTRACT

In mammals, a number of anatomical and functional changes occur in the circadian timing system with aging. In certain species, aging can be modified by various factors which induce a number of pathological changes. In a small primate, the gray mouse lemur (Microcebus murinus), long-term acceleration of seasonal rhythms by exposing the animals to a shortened photoperiodic regime (up to 2.5 times the natural photoperiodic regime) alters longevity, based on survival curves and morphological changes. This provides a model for challenging the idea that modifications of the circadian pacemaker are related to chronological (years) versus biological (photoperiodic cycles) age. To assess the effect of aging and accelerated aging on the circadian pacemaker of this primate, we measured body weight variations, the daily rhythm in urine 6-sulfatoxymelatonin and the light-induced expression of the immediate early gene (Fos) in the suprachiasmatic nucleus of mouse lemurs that had been exposed to different photoperiodic cycles. Urine samples were collected throughout the day and urine 6-sulfatoxymelatonin levels were measured by radioimmunoassay. Light-induced Fos expression in the suprachiasmatic nucleus was studied by exposing the animals to a 15-min monochromatic pulse of light (500 nm) at saturating or sub-saturating levels of irradiance (10(11) or 10(14) photons/cm(2)/s) during the dark phase. The classical pattern of 6-sulfatoxymelatonin excretion was significantly altered in aged mouse lemurs which failed to show a nocturnal peak. Fos expression following exposure to low levels of irradiance was reduced by 88% in the suprachiasmatic nucleus of aged mouse lemurs. Exposure to higher irradiance levels showed similar results, with a reduction of 66% in Fos expression in the aged animals. Animals subjected to artificially accelerated aging demonstrated the same alterations in melatonin production and Fos response to light as animals that had been maintained in a routine photoperiodic cycle. Our data indicate that there are dramatic changes in melatonin production and in the cellular response to photic input in the suprachiasmatic nucleus of aged mouse lemurs, and that these alterations depend on the number of expressed seasonal cycles rather than on a fixed chronological age. These results provide new insights into the mechanisms underlying artificial accelerated aging at the level of the molecular mechanisms of the biological clock.


Subject(s)
Aging/physiology , Cheirogaleidae/metabolism , Gene Expression Regulation/physiology , Melatonin/analogs & derivatives , Melatonin/urine , Photoperiod , Proto-Oncogene Proteins c-fos/metabolism , Suprachiasmatic Nucleus/metabolism , Animals , Body Weight/physiology , Cheirogaleidae/anatomy & histology , Circadian Rhythm/physiology , Immunohistochemistry , Melatonin/metabolism , Photic Stimulation , Seasons , Suprachiasmatic Nucleus/cytology
16.
J Comp Neurol ; 438(4): 490-504, 2001 Oct 01.
Article in English | MEDLINE | ID: mdl-11559903

ABSTRACT

Strepsirrhines are of considerable interest for understanding the evolution of cone photoreceptors because they represent the most ancestral living primates. The retina of nocturnal Strepsirrhines is reported to contain a single population of medium/long wavelength (MW/LW) cones whereas short wavelength (SW) cones are totally absent. The area centralis of nocturnal Strepsirrhines also lacks the degree of central specialization seen in the fovea of diurnal primates. In this study of a nocturnal Strepsirrhine, the gray mouse lemur (Microcebus murinus), we used specific antibodies that recognize SW and MW/LW opsins to determine the presence of different cone subtypes and their distribution in relation to that of rods and ganglion cells. The results are compared to two diurnal Haplorhine species, a New World (Callithrix jacchus) and an Old World (Macaca fascicularis) monkey. In the mouse lemur, both antibodies to MW/LW cone opsin (COS-1 and CERN956) label the same population of cones. A small proportion of SW cones is only stained by the JH455 antiserum whereas the monoclonal OS-2 antibody shows negative staining. These two antibodies label the same SW cone population in other primates. The extracellular matrix of all cones is also labeled by the peanut agglutinin (PNA) lectin. In mouse lemur retinal wholemounts, peak cone density is localized at the area centralis and ranged from 7,500 to 8,000 cones/mm(2). SW cones represent less than 0.2 % of the total cone population and are mainly located in the nasal part of the retina. SW cones show an irregular distribution and densities never exceed 49 cones/mm(2). The distribution of neurons in the ganglion cell layer shows a distinct centroperipheral gradient with a peak of 28,000 cells/mm(2) at the area centralis. Rod distribution shows a centroperipheral gradient with the peak (850,000 rods/mm(2)) including and extending slightly dorsal to the area centralis. The theoretical spatial resolution of the mouse lemur (4.9 cycles/degree) is slightly lower to that of other nocturnal primates. The densities of rods, cones, and ganglion cell layer neurons represent a compromise between spatial resolution and sensitivity for both photopic and scotopic vision.


Subject(s)
Cheirogaleidae/anatomy & histology , Color Perception/physiology , Retinal Cone Photoreceptor Cells/cytology , Retinal Ganglion Cells/cytology , Retinal Rod Photoreceptor Cells/cytology , Rod Opsins/metabolism , Animals , Callithrix/anatomy & histology , Callithrix/metabolism , Cheirogaleidae/metabolism , Circadian Rhythm/physiology , Immunohistochemistry , Light Signal Transduction/physiology , Macaca fascicularis/anatomy & histology , Macaca fascicularis/metabolism , Retinal Cone Photoreceptor Cells/metabolism , Retinal Ganglion Cells/metabolism , Retinal Rod Photoreceptor Cells/metabolism
18.
Mech Dev ; 103(1-2): 173-5, 2001 May.
Article in English | MEDLINE | ID: mdl-11335129

ABSTRACT

Over recent years the secreted guidance cue, netrin-1, and its receptor, DCC, have been shown to be an essential guidance system driving axon pathfinding within the developing vertebrate central nervous system (CNS). Mice lacking DCC exhibit severe defects in commissural axon extension towards the floor plate demonstrating that the DCC-netrin guidance system is largely responsible for directing axonal projections toward the ventral midline in the developing spinal cord (Fazeli et al., Nature 386 (1997) 796). In addition, these mutants lack several major commissures within the forebrain, including the corpus callosum and the hippocampal commissure. In contrast to the CNS, the role of the DCC guidance receptor in the development of the mammalian peripheral and enteric nervous systems (PNS and ENS) has not been investigated. Here we demonstrate using immunohistochemical analysis that the DCC receptor is present in the developing mouse PNS where it is found on spinal, segmental, and sciatic nerves, and in developing sensory ganglia and their associated axonal projections. In addition, DCC is present in the ENS throughout the early developmental phase.


Subject(s)
Cell Adhesion Molecules/metabolism , Nerve Growth Factors/metabolism , Peripheral Nervous System/embryology , Stomach/embryology , Stomach/innervation , Tumor Suppressor Proteins , Animals , Corpus Callosum/embryology , DCC Receptor , Hippocampus/embryology , Immunohistochemistry , Mice , Netrin-1 , Receptors, Cell Surface , Spinal Cord/embryology , Time Factors , Tissue Distribution
19.
Mech Dev ; 101(1-2): 245-8, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11231084

ABSTRACT

The netrin family of axon guidance cues has been shown to play a pivotal role in the guidance of a variety of axon projections during embryonic development, both in the vertebrate and invertebrate. While the guidance potential of netrin-1 has been examined in depth in many regions of the developing mouse brain very little information is available on the expression and activity of netrin-3. Here we show that the netrin-3 protein is present on motor neurons and subpopulations of neurons within sensory and sympathetic ganglia. Moreover, significant levels of netrin-3 protein were found to be associated with the axons projecting from these neurons suggesting a role for netrin-3 in axon pathfinding and fasciculation within the peripheral nervous system.


Subject(s)
Axons/metabolism , Brain/embryology , Nerve Tissue Proteins/biosynthesis , Neurons/metabolism , Animals , Immunohistochemistry , Mice , Molecular Sequence Data , Netrins , Neural Crest/embryology , Time Factors , Tissue Distribution , Trigeminal Ganglion/embryology
20.
Curr Protoc Neurosci ; Chapter 5: Unit 5.5, 2001 May.
Article in English | MEDLINE | ID: mdl-18428504

ABSTRACT

Antibodies are serum immunoglobulins with binding specificity for particular antigens, and polyclonal antibodies are particularly valuable for immunoprecipitation and immunoblotting. In this unit, the production of polyclonal antisera specific for protein antigens in rabbits, rats, mice, and hamsters is described. A support protocol is included for preparing serum from blood.


Subject(s)
Antigens/immunology , Immune Sera/biosynthesis , Immunoglobulins/biosynthesis , Animals , Antigens/genetics , Clone Cells/immunology , Clone Cells/metabolism , Cricetinae , Immune Sera/blood , Immune Sera/genetics , Immunoglobulins/genetics , Mice , Rabbits , Rats
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