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1.
Clin Exp Immunol ; 180(3): 371-82, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25581259

ABSTRACT

Cytotoxic T lymphocyte antigen 4 (CTLA-4) immunoglobulin (Ig) is an important regulator of T cell activation and a fusion protein directed at CD80 and CD86; it blocks co-stimulatory signalling and T cell activation. We have taken advantage of a murine model of human primary biliary cirrhosis (PBC), mice expressing a transforming growth factor (TGF)-ß receptor II dominant negative (dnTGF-ßRII) transgene to address the potential therapeutic efficacy of CTLA-4 Ig. To mimic patients with PBC at different stages or duration of disease, we treated mice with either CTLA-4 Ig or control IgG three times weekly from 3 to 12 or 24 weeks of age, or from 12 to 24 weeks of age. CTLA-4 Ig treatment from 3 weeks of age significantly reduced liver inflammation to 12 weeks of age. Treatment initiated at 12 weeks of age also ameliorated the autoimmune cholangitis at 24 weeks of age. However, in mice treated at 3 weeks of age, suppression of liver inflammation was not sustained and colitis was aggravated when treatment was extended to 24 weeks of age. Our data indicate that, in dnTGF-ßRII mice, CTLA-4 Ig treatment has short-term beneficial effects on autoimmune cholangitis, but the effect varies according to duration of treatment and the time in which therapy was initiated. Further dissection of the events that lead to the reduction in therapeutic effectiveness of CTLA-4 Ig will be critical to determining whether such efforts can be applied to human PBC.


Subject(s)
Autoimmune Diseases/immunology , CTLA-4 Antigen/immunology , Cholangitis/immunology , Immunoglobulins/immunology , Animals , Autoantibodies/blood , Autoantibodies/immunology , Autoimmune Diseases/drug therapy , Autoimmune Diseases/pathology , Autoimmunity/drug effects , Cholangitis/drug therapy , Cholangitis/pathology , Disease Models, Animal , Immunoglobulin G/immunology , Immunoglobulins/administration & dosage , Immunoglobulins/pharmacology , Liver/drug effects , Liver/immunology , Liver/pathology , Lymphocyte Activation/immunology , Mice , Mice, Transgenic , Mitochondria/immunology , Protein Serine-Threonine Kinases/genetics , Receptor, Transforming Growth Factor-beta Type II , Receptors, Transforming Growth Factor beta/genetics , T-Lymphocyte Subsets/immunology , T-Lymphocyte Subsets/metabolism , Time Factors
2.
Clin Exp Immunol ; 178(2): 253-61, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25041369

ABSTRACT

Treatment of primary biliary cirrhosis (PBC) has lagged behind that of other autoimmune diseases. In this study we have addressed the potential utility of immunotherapy using regulatory T cells (Treg ) to treat murine autoimmune cholangitis. In particular, we have taken advantage of our ability to produce portal inflammation and bile duct cell loss by transfer of CD8(+) T cells from the dominant negative form of transforming growth factor beta receptor type II (dnTGF-ßRII) mice to recombination-activating gene (Rag)1(-/-) recipients. We then used this robust established adoptive transfer system and co-transferred CD8(+) T cells from dnTGF-ßRII mice with either C57BL/6 or dnTGF-ßRII forkhead box protein 3 (FoxP3(+) ) T cells. Recipient mice were monitored for histology, including portal inflammation and intralobular biliary cell damage, and also included a study of the phenotypical changes in recipient lymphoid populations and local and systemic cytokine production. Importantly, we report herein that adoptive transfer of Treg from C57BL/6 but not dnTGF-ßRII mice significantly reduced the pathology of autoimmune cholangitis, including decreased portal inflammation and bile duct damage as well as down-regulation of the secondary inflammatory response. Further, to define the mechanism of action that explains the differential ability of C57BL/6 Treg versus dnTGF-ßRII Treg on the ability to down-regulate autoimmune cholangitis, we noted significant differential expression of glycoprotein A repetitions predominant (GARP), CD73, CD101 and CD103 and a functionally significant increase in interleukin (IL)-10 in Treg from C57BL/6 compared to dnTGF-ßRII mice. Our data reflect the therapeutic potential of wild-type CD4(+) FoxP3(+) Treg in reducing the excessive T cell responses of autoimmune cholangitis, which has significance for the potential immunotherapy of PBC.


Subject(s)
Autoimmune Diseases/immunology , Autoimmune Diseases/therapy , Cholangitis/immunology , Cholangitis/therapy , Immunotherapy, Adoptive , T-Lymphocytes, Regulatory/immunology , Animals , Autoimmune Diseases/pathology , Cholangitis/pathology , Cytokines/biosynthesis , Disease Models, Animal , Forkhead Transcription Factors/metabolism , Immunophenotyping , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Phenotype , Spleen/cytology , Spleen/immunology , Spleen/metabolism , T-Lymphocyte Subsets/immunology , T-Lymphocyte Subsets/metabolism , T-Lymphocytes, Regulatory/metabolism
3.
Gene Ther ; 21(2): 212-8, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24352195

ABSTRACT

Dendritic cells (DC) targeting vaccines require high efficiency for uptake, followed by DC activation and maturation. We used magnetic vectors comprising polyethylenimine (PEI)-coated superparamagnetic iron oxide nanoparticles, with hyaluronic acid (HA) of different molecular weights (<10 and 900 kDa) to reduce cytotoxicity and to facilitate endocytosis of particles into DCs via specific surface receptors. DNA encoding Plasmodium yoelii merozoite surface protein 1-19 and a plasmid encoding yellow fluorescent gene were added to the magnetic complexes with various % charge ratios of HA: PEI. The presence of magnetic fields significantly enhanced DC transfection and maturation. Vectors containing a high-molecular-weight HA with 100% charge ratio of HA: PEI yielded a better transfection efficiency than others. This phenomenon was attributed to their longer molecular chains and higher mucoadhesive properties aiding DNA condensation and stability. Insights gained should improve the design of more effective DNA vaccine delivery systems.


Subject(s)
Ferric Compounds/metabolism , Hyaluronic Acid/pharmacology , Polyethyleneimine/chemistry , Polyethyleneimine/metabolism , Vaccines, DNA/administration & dosage , Vaccines, DNA/chemistry , Animals , Antigens, Protozoan/genetics , Dendritic Cells , Ferric Compounds/chemistry , Genetic Vectors , Magnetic Phenomena , Mice, Inbred C57BL , Nanoparticles/administration & dosage , Nanoparticles/adverse effects , Nanoparticles/chemistry , Plasmodium yoelii/genetics , Transfection
4.
Clin Exp Immunol ; 174(3): 364-71, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23981074

ABSTRACT

While there have been significant advances in our understanding of the autoimmune responses and the molecular nature of the target autoantigens in primary biliary cirrhosis (PBC), unfortunately these data have yet to be translated into new therapeutic agents. We have taken advantage of a unique murine model of autoimmune cholangitis in which mice expressing a dominant negative form of transforming growth factor ß receptor II (dnTGFßRII), under the control of the CD4 promoter, develop an intense autoimmune cholangitis associated with serological features similar to human PBC. CD40-CD40 ligand (CD40L) is a major receptor-ligand pair that provides key signals between cells of the adaptive immune system, prompting us to determine the therapeutic potential of treating autoimmune cholangitis with anti-CD40L antibody (anti-CD40L; MR-1). Four-week-old dnTGFßRII mice were injected intraperitoneally with either anti-CD40L or control immunoglobulin (Ig)G at days 0, 2, 4 and 7 and then weekly until 12 or 24 weeks of age and monitored for the progress of serological and histological features of PBC, including rigorous definition of liver cellular infiltrates and cytokine production. Administration of anti-CD40L reduced liver inflammation significantly to 12 weeks of age. In addition, anti-CD40L initially lowered the levels of anti-mitochondrial autoantibodies (AMA), but these reductions were not sustained. These data indicate that anti-CD40L delays autoimmune cholangitis, but the effect wanes over time. Further dissection of the mechanisms involved, and defining the events that lead to the reduction in therapeutic effectiveness will be critical to determining whether such efforts can be applied to PBC.


Subject(s)
Antibodies, Monoclonal/therapeutic use , Autoimmune Diseases/therapy , CD40 Ligand/immunology , Cholangitis/therapy , Mitochondria/immunology , Animals , Antibodies, Monoclonal/immunology , Autoantigens/immunology , Autoimmune Diseases/immunology , Autoimmunity/immunology , CD4 Antigens/genetics , CD40 Antigens/immunology , CD40 Antigens/metabolism , CD40 Ligand/metabolism , Cholangitis/immunology , Cytokines/metabolism , Disease Models, Animal , Disease Progression , Genotype , Liver/cytology , Liver/metabolism , Liver Cirrhosis, Biliary/immunology , Mice , Mice, Inbred C57BL , Promoter Regions, Genetic/genetics , Receptors, Transforming Growth Factor beta/immunology
5.
Clin Exp Immunol ; 172(1): 95-103, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23480189

ABSTRACT

The phagocytic clearance of apoptotic cells is critical for tissue homeostasis; a number of non-professional phagocytic cells, including epithelial cells, can both take up and process apoptotic bodies, including the release of anti-inflammatory mediators. These observations are particularly important in the case of human intrahepatic biliary cells (HiBEC), because such cells are themselves a target of destruction in primary biliary cirrhosis, the human autoimmune disease. To address the apoptotic ability of HiBECs, we have focused on their ability to phagocytize apoptotic blebs from autologous HiBECs. In this study we report that HiBEC cells demonstrate phagocytic function from autologous HiBEC peers accompanied by up-regulation of the chemokines CCL2 [monocyte chemotactic protein-1 (MCP-1)] and CXCL8 [interleukin (IL)-8]. In particular, HiBEC cells express the phagocytosis-related receptor phosphatidylserine receptors (PSR), implying that HiBECs function through the 'eat-me' signal phosphatidylserine expressed by apoptotic cells. Indeed, although HiBEC cells acquire antigen-presenting cell (APC) function, they do not change the expression of classic APC function surface markers after engulfment of blebs, both with and without the presence of Toll-like receptor (TLR) stimulation. These results are important not only for understanding of the normal physiological function of HiBECs, but also explain the inflammatory potential and reduced clearance of HiBEC cells following the inflammatory cascade in primary biliary cirrhosis.


Subject(s)
Apoptosis , Bile Ducts, Intrahepatic/immunology , Epithelial Cells/immunology , Macrophages/immunology , Phagocytosis , Animals , Bile Acids and Salts/pharmacology , Bile Ducts, Intrahepatic/cytology , Cells, Cultured , Chemokine CCL2/genetics , Chemokine CCL2/immunology , Epithelial Cells/cytology , Epithelial Cells/drug effects , Gene Expression , Humans , Interleukin-8/genetics , Interleukin-8/immunology , Lipopolysaccharides/pharmacology , Liver Cirrhosis, Biliary/immunology , Liver Cirrhosis, Biliary/pathology , Macrophages/cytology , Macrophages/drug effects , Mice , Phosphatidylserines/immunology , Phosphatidylserines/metabolism , Poly I-C/pharmacology , Receptors, Cell Surface/genetics , Receptors, Cell Surface/immunology , Signal Transduction , Toll-Like Receptors/genetics , Toll-Like Receptors/immunology , Up-Regulation
6.
Clin Exp Immunol ; 166(1): 110-20, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21910728

ABSTRACT

A void in understanding primary biliary cirrhosis (PBC) is the absence of appropriate animal models. Our laboratory has studied a murine model of autoimmune cholangitis induced following immunization with 2-octynoic acid (2OA), an antigen identified following extensive quantitative structural activity relationship (QSAR) analysis, using human autoantibodies and three-dimensional analysis of the mitochondrial autoantigen, the E2 subunit of the pyruvate dehydrogenase complex (PDC-E2). Mice immunized with 2OA coupled to bovine serum albumin (BSA) develop anti-mitochondrial antibodies (AMAs) of the identical specificity as humans with PBC, and in addition develop inflammatory portal cell infiltrates in liver. However, the natural history of disease is less severe than in humans and does not include fibrosis. Data from human and autoimmune murine models suggest that environmental and/or infectious agents can exacerbate autoimmune reactions, and a model of PBC has been described in which polyinosinic-polycytidylic acid (poly I:C), a viral RNA mimetic and Toll-like receptor 3 (TLR-3) agonist induces low-titre AMAs and in mild portal infiltrates. We took advantage of our established model to determine whether immunization with 2OA-BSA coupled with poly I:C alters the disease process. Indeed, the addition of poly I:C produces a profound exacerbation of autoimmune cholangitis, including a significant increase in CD8(+) infiltrating T cells, as well as a marked increase of proinflammatory cytokines. In addition, mice have evidence of fibrosis. These findings lend support to the concept that besides breakdown of self-tolerance, there is a requirement of a second 'hit' during the breakdown process that leads to disease which more faithfully mimics human PBC.


Subject(s)
Autoimmune Diseases/immunology , Cholangitis/immunology , Dihydrolipoyllysine-Residue Acetyltransferase/adverse effects , Disease Models, Animal , Fatty Acids, Monounsaturated/adverse effects , Liver Cirrhosis, Biliary/immunology , Liver/immunology , Mitochondrial Proteins/adverse effects , Poly I-C/adverse effects , Toll-Like Receptor 3/immunology , Animals , Autoantibodies/blood , Autoantibodies/immunology , Autoantigens/adverse effects , Autoantigens/chemistry , Autoantigens/immunology , Autoimmune Diseases/chemically induced , Autoimmune Diseases/pathology , Cattle , Cholangitis/chemically induced , Cholangitis/pathology , Cytokines/biosynthesis , Cytokines/immunology , Dihydrolipoyllysine-Residue Acetyltransferase/chemistry , Dihydrolipoyllysine-Residue Acetyltransferase/immunology , Fatty Acids, Monounsaturated/chemistry , Fatty Acids, Monounsaturated/immunology , Female , Humans , Immunization , Liver/drug effects , Liver/pathology , Liver Cirrhosis, Biliary/chemically induced , Liver Cirrhosis, Biliary/pathology , Male , Mice , Mice, Inbred C57BL , Mitochondria/immunology , Mitochondrial Proteins/chemistry , Mitochondrial Proteins/immunology , Poly I-C/chemistry , Poly I-C/immunology , Serum Albumin/chemistry , Toll-Like Receptor 3/agonists , Toll-Like Receptor 3/metabolism
7.
Clin Exp Immunol ; 155(3): 577-86, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19094117

ABSTRACT

Our laboratory has suggested that loss of tolerance to pyruvate dehydrogenase (PDC-E2) leads to an anti-mitochondrial antibody response and autoimmune cholangitis, similar to human primary biliary cirrhosis (PBC). We have suggested that this loss of tolerance can be induced either via chemical xenobiotic immunization or exposure to select bacteria. Our work has also highlighted the importance of genetic susceptibility. Using the non-obese diabetic (NOD) congenic strain 1101 (hereafter referred to as NOD.1101 mice), which has chromosome 3 regions from B6 introgressed onto a NOD background, we exposed animals to 2-octynoic acid (2OA) coupled to bovine serum albumin (BSA). 2OA has been demonstrated previously by a quantitative structural activity relationship to react as well as or better than lipoic acid to anti-mitochondrial antibodies. We demonstrate herein that NOD.1101 mice immunized with 2OA-BSA, but not with BSA alone, develop high titre anti-mitochondrial antibodies and histological features, including portal infiltrates enriched in CD8(+) cells and liver granulomas, similar to human PBC. We believe this model will allow the rigorous dissection of early immunogenetic cause of biliary damage.


Subject(s)
Autoimmune Diseases/immunology , Cholangitis/immunology , Disease Models, Animal , Animals , Autoantibodies/blood , Autoantibodies/immunology , Cytokines/blood , Enzyme-Linked Immunosorbent Assay/methods , Fatty Acids, Monounsaturated/pharmacology , Female , Flow Cytometry , Genetic Predisposition to Disease , Immunization , Immunoglobulin A/blood , Immunoglobulin G/blood , Immunoglobulin M/blood , Immunophenotyping , Liver Cirrhosis, Biliary/immunology , Male , Mice , Mice, Inbred C57BL , Mice, Inbred NOD , Mitochondria, Liver/immunology , Serum Albumin, Bovine/pharmacology , Xenobiotics/pharmacology
8.
Gene Ther ; 16(2): 200-10, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19037242

ABSTRACT

This study initially sought to investigate the immunostimulatory properties of recombinant adeno-associated virus (rAAV) with a view to developing a genetic vaccine for malaria using muscle as a target tissue. To augment humoral immunity, the AAV-encoded antigen was genetically fused with CTLA4-Ig, a recombinant molecule that binds B7 costimulatory molecules. At 10(9) vg, CTLA4-Ig fusion promoted the humoral immune response 100-fold and was dependent on CTLA4-Ig binding with B7 costimulatory molecules, confirming plasmid DNA models using this strategy. In distinct contrast, 10(12)-10(13) vg of rAAV1 specifically induced long-lived humoral tolerance through a mechanism that is independent of CTLA4-Ig binding with B7. This finding was unexpected, as rAAV delivery to muscle, unlike liver, has shown that this tissue provides a highly immunogenic environment for induction of humoral immunity against rAAV transgene products. An additional unpredicted consequence of antigen fusion with CTLA4-Ig was the enhancement of antigen expression by approximately one log, an effect mapped to the hinge and Fc domain of IgG(1,) but not involving antigen dimerization or the neonatal Fc receptor. Collectively, these findings significantly advance the potential of rAAV both as a vaccine or immunotherapeutic platform for the induction of antigen-specific humoral immunity or tolerance and as a gene therapeutic delivery system.


Subject(s)
Dependovirus/genetics , Genetic Vectors , Immune Tolerance/immunology , Immunoconjugates/immunology , Immunosuppressive Agents/immunology , Abatacept , Animals , Antibodies, Protozoan/biosynthesis , Antigens, Protozoan/immunology , B7-1 Antigen/metabolism , Dose-Response Relationship, Immunologic , Epitopes/immunology , Female , Gene Transfer Techniques , Immunoconjugates/administration & dosage , Immunosuppressive Agents/administration & dosage , Injections, Intramuscular , Membrane Proteins/immunology , Mice , Mice, Inbred BALB C , Protozoan Proteins/immunology , Transgenes/immunology , Vaccines, DNA/immunology
9.
Infect Immun ; 72(10): 5840-9, 2004 Oct.
Article in English | MEDLINE | ID: mdl-15385485

ABSTRACT

Immunization with merozoite surface protein 4/5 (MSP4/5), the murine malaria homologue of Plasmodium falciparum MSP4 and MSP5, has been shown to protect mice against challenge by parasites expressing the homologous form of the protein. The gene encoding MSP4/5 was sequenced from a number of Plasmodium yoelii isolates in order to assess the level of polymorphism in the protein. The gene was found to be highly conserved among the 13 P. yoelii isolates sequenced, even though many of the same isolates showed pronounced variability in their MSP1(19) sequences. Nonsynonymous mutations were detected only for the isolates Plasmodium yoelii nigeriensis N67 and Plasmodium yoelii killicki 193L and 194ZZ. Immunization and challenge of BALB/c mice showed that the heterologous MSP4/5 proteins were able to confer a level of protection against lethal Plasmodium yoelii yoelii YM challenge infection similar to that induced by immunization with the homologous MSP4/5 protein. To explore the limits of heterologous protection, mice were immunized with recombinant MSP4/5 protein from Plasmodium berghei ANKA and Plasmodium chabaudi adami DS and challenged with P. y. yoelii YM. Interestingly, significant protection was afforded by P. berghei ANKA MSP4/5, which shows 81% sequence identity with P. y. yoelii YM MSP4/5, but it was abolished upon reduction and alkylation. Significant protection was not observed for mice immunized with recombinant P. c. adami DS MSP4/5, which shows 55.7% sequence identity with P. y. yoelii YM MSP4/5. This study demonstrates the robustness of MSP4/5 in conferring protection against variant forms of the protein in a murine challenge system, in contrast to the situation found for other asexual-stage proteins, such as MSP1(19) and AMA1.


Subject(s)
Antigens, Protozoan/immunology , Malaria/prevention & control , Malaria/parasitology , Membrane Proteins/immunology , Plasmodium yoelii/immunology , Protozoan Proteins/immunology , Amino Acid Sequence , Animals , Antibodies, Protozoan/immunology , Antigens, Protozoan/chemistry , Antigens, Protozoan/genetics , Antigens, Protozoan/isolation & purification , Escherichia coli/genetics , Female , Malaria/immunology , Malaria Vaccines/chemistry , Malaria Vaccines/genetics , Malaria Vaccines/immunology , Membrane Proteins/chemistry , Membrane Proteins/genetics , Membrane Proteins/isolation & purification , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Plasmodium/chemistry , Plasmodium/classification , Plasmodium/genetics , Plasmodium/immunology , Plasmodium yoelii/chemistry , Plasmodium yoelii/classification , Plasmodium yoelii/genetics , Polymorphism, Genetic/genetics , Protozoan Proteins/chemistry , Protozoan Proteins/genetics , Protozoan Proteins/isolation & purification , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/isolation & purification , Sequence Analysis, DNA , Species Specificity , Survival Rate
10.
Vaccine ; 21(21-22): 3030-42, 2003 Jun 20.
Article in English | MEDLINE | ID: mdl-12798647

ABSTRACT

The enhancement of immunogenicity of malarial DNA vaccines is important if they are to have practical application in protecting against blood-stage malaria. Here we describe three different DNA vaccine vector types used in conjunction with the blood-stage merozoite surface protein 4/5 (MSP4/5), the murine homologue of Plasmodium falciparum MSP4 and MSP5, in an attempt to enhance survival against lethal Plasmodium chabaudi adami DS blood-stage challenge. MSP4/5 was inserted into VR1020 (secretory), monocyte-chemotactic protein-3 (MCP-3) (chemoattractant), and cytotoxic T-lymphocyte antigen 4 (CTLA4) (lymph node targeting) vectors. Mice were immunized intradermally via gene-gun, IM injection, or boosting with recombinant MSP4/5 protein. Antibody responses after boosting were predominantly of the IgG1 and IgE isotypes, with low avidity antibodies produced in DNA primed groups. Despite antibody responses comparable to recombinant protein immunization, boosting mice primed with antigens encoded by MCP-3 and CTLA4 vectors did not enhance survival compared to vector control groups. Gene-gun vaccination using VR1020/MSP4/5 followed by recombinant MSP4/5 boosting, or gene-gun DNA vaccination alone using MCP-3/MSP4/5, resulted in enhanced survival compared to empty vector control mice. The results suggest that the enhancement of survival against lethal blood-stage malaria challenge after utilizing MSP4/5 DNA vaccination is therefore highly dependent on the route and type of vaccine vector employed.


Subject(s)
Antigens, Protozoan/immunology , Malaria Vaccines/immunology , Malaria/immunology , Membrane Proteins/immunology , Plasmodium chabaudi/immunology , Protozoan Proteins/immunology , Vaccines, DNA/immunology , Animals , Antibodies, Protozoan/blood , Antigens, Protozoan/biosynthesis , Antigens, Protozoan/genetics , Biolistics , COS Cells , Chlorocebus aethiops , Female , Genetic Vectors , Immunization Schedule , Immunoglobulin E/immunology , Immunoglobulin G/immunology , Malaria/prevention & control , Malaria Vaccines/genetics , Membrane Proteins/biosynthesis , Membrane Proteins/genetics , Mice , Mice, Inbred BALB C , Plasmids , Plasmodium chabaudi/genetics , Protozoan Proteins/biosynthesis , Protozoan Proteins/genetics , Survival Analysis , Vaccines, DNA/genetics
12.
Mol Biochem Parasitol ; 118(2): 139-45, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11738704

ABSTRACT

The torrent of sequence information unleashed by the various genome sequencing projects, including that of Plasmodium falciparum, will lead to an unprecedented increase in the data available for research purposes. The scientific community is struggling to develop ways to assimilate this information and ensure that it is fully analysed in a way that enables rapid development of new therapeutic and diagnostic advances. This is particularly so for the field of tropical medicine where many of the scientists have had limited training in the area of Bioinformatics and may be further hampered by poor access to the sequence data. A number of collections of malaria genome sequence are available, each with their own advantages and disadvantages, however further improvements in these information resources are needed. In particular, there would be great benefit in integrating genomic sequence and functional genomics results with the large amount of pre-existing knowledge related to parasite biology and immunological interactions with the host. Attempts to achieve this include the PlasmoDB database, and the lessons learned in this effort could be of great utility to other organism-specific databases.


Subject(s)
Computational Biology , Genome, Protozoan , Plasmodium falciparum/genetics , Animals , Databases, Genetic , Humans , Information Storage and Retrieval , Internet , Malaria/parasitology
13.
Mol Biochem Parasitol ; 118(2): 175-86, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11738708

ABSTRACT

A method has been developed for discovering patterns in DNA sequences. Loosely based on the well-known Lempel Ziv model for text compression, the model detects repeated sequences in DNA. The repeats can be forward or inverted, and they need not be exact. The method is particularly useful for detecting distantly related sequences, and for finding patterns in sequences of biased nucleotide composition, where spurious patterns are often observed because the bias leads to coincidental nucleotide matches. We show here the utility of the method by applying it to genomic sequences of Plasmodium falciparum. A single scan of chromosomes 2 and 3 of P. falciparum, using our method and no other a priori information about the sequences, reveals regions of low complexity in both telomeric and central regions, long repeats in the subtelomeric regions, and shorter repeat areas in dense coding regions. Application of the method to a recently sequenced contig of chromosome 10 that has a particularly biased base composition detects a long internal repeat more readily than does the conventional dot matrix plot. Space requirements are linear, so the method can be used on large sequences. The observed repeat patterns may be related to large-scale chromosomal organization and control of gene expression. The method has general application in detecting patterns of potential interest in newly sequenced genomic material.


Subject(s)
Computational Biology/methods , DNA, Protozoan/genetics , Genome, Protozoan , Information Theory , Plasmodium falciparum/genetics , Repetitive Sequences, Nucleic Acid/genetics , Algorithms , Animals , Chromosomes/genetics , Markov Chains , Models, Genetic , Models, Statistical , Probability , Sequence Analysis, DNA , Telomere
14.
Mol Biochem Parasitol ; 118(1): 41-8, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11704272

ABSTRACT

We describe an unusual tryptophan-rich protein of Plasmodium falciparum that contains threonine-rich repeats. The protein is encoded by a 2.5 kb gene with a two-exon structure including a short AT-rich intron that is spliced out of the mature message. The 5' end of the gene encodes a hydrophobic region, which is assumed to be a signal peptide. The peptide sequence is characterised by a tryptophan-rich region and a block of degenerate threonine repeats. The protein is synthesised throughout the asexual life cycle and has an apparent molecular weight of approximately 94 kDa. It has a variable molecular weight in different strains of P. falciparum. Length polymorphisms can be found in the intron region and the second exon. Four single nucleotide mutations are localised in the tryptophan-rich region and two were found in the threonine-repeat block. Homology searches based on gene structure and amino acid sequence revealed a relationship with a P. yoelii antigen that has been used successfully in vaccine studies. Thus, this P. falciparum antigen should be considered an additional candidate for assessment in vaccination against the asexual blood-stages of P. falciparum.


Subject(s)
Malaria Vaccines/genetics , Membrane Proteins/genetics , Plasmodium falciparum/immunology , Plasmodium yoelii/immunology , Protozoan Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , Malaria/prevention & control , Malaria Vaccines/immunology , Membrane Proteins/chemistry , Membrane Proteins/immunology , Molecular Sequence Data , Protozoan Proteins/chemistry , Protozoan Proteins/immunology , Sequence Analysis, DNA , Sequence Homology, Amino Acid
15.
Hepatology ; 34(4 Pt 1): 631-7, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11584357

ABSTRACT

The immunodominant antimitochondrial antibody (AMA) response in primary biliary cirrhosis (PBC) is directed against the E2 component of pyruvate dehydrogenase (PDC-E2). The nature of the clonal selection process is unclear, and to address this issue, we took advantage of a transgenic technology, XenoMouse, that contains 80% of the human immunoglobulin (Ig) variable gene repertoire and can produce high-affinity human antibodies to virtually any immunogen without evidence of clonal bias. We immunized mice with PDC-E2 to obtain 13 HmAbs, including 4 IgG(2) and 9 IgM isotypes. Immunoglobulin gene analysis was unique and demonstrated a clonal bias; the immunoglobulin gene usage was considerably different from other antibody responses analyzed in XenoMouse systems. Four of the 13 mAbs recognized the inner lipoyl domain of PDC-E2, 2 of 13 recognized the entire PDC-E2 molecule, 4 of 13 recognized PDC-E2 and OGDC-E2, 1 of 13 recognized OGDC only, 1 recognized BCOADC-E2 only, and 1 recognized an unidentified 100-kd mitochondrial protein. Immunohistochemical staining using these HmAbs produced mitochondrial staining of septal bile ducts in both PBC and control livers. Ig gene analysis showed that 7 of 13 HmAbs used the V(H)3 and 4 of 13 used VH4 gene repertoire, respectively. Three of 7 V(H)3 antibodies used the same Ig VH3-21 gene family found in human AMA from patients with PBC. The CDRs of these autoantibodies were slightly mutated when compared with the sequences present within the Ig germline genes. In conclusion, the XenoMouse not only recapitulates the unique specificity and restriction of PBC patients, but indicates that the autoantibodies are derived from a restricted clonal selection process. Such data suggest that the original immunogen leads to somatic mutation without subsequent development of determinant spreading.


Subject(s)
Antibodies, Monoclonal/immunology , Autoantigens/immunology , Genes, Immunoglobulin , Liver Cirrhosis, Biliary/immunology , Mitochondria/immunology , Pyruvate Dehydrogenase Complex/immunology , Amino Acid Sequence , Animals , Dihydrolipoyllysine-Residue Acetyltransferase , Immunization , Immunoglobulin Variable Region/genetics , Immunohistochemistry , Liver Cirrhosis, Biliary/etiology , Mice , Molecular Sequence Data
16.
Vaccine ; 19(32): 4661-8, 2001 Sep 14.
Article in English | MEDLINE | ID: mdl-11535314

ABSTRACT

The gene encoding the Plasmodium yoelii homologue of P. falciparum merozoite surface proteins 4 (MSP4) and 5 (MSP5) has been expressed in Escherichia coli and Saccharomyces cerevisiae. The protein contains a single epidermal growth factor (EGF)-like domain and is expressed in a form lacking the predicted N-terminal signal and glycosyl phosphatidylinositol (GPI) attachment sequences. The recombinant protein derived from E. coli (EcMSP4/5) was highly effective at protecting mice against lethal challenge with 10(5) parasites of the P. yoelii YM strain. In contrast, the protective efficacy of yeast-derived MSP4/5 (yMSP4/5) was considerably less. The antibody titres in both groups were significantly different with mice immunised with yeast-derived protein showing significantly lower pre-challenge antibody responses. There was a significant inverse correlation between antibody levels as measured by ELISA and peak parasitaemia. Mice immunised with EcMSP4/5 produced anti-PyMSP4/5 antibodies predominantly of the IgG2a and IgG2b isotypes, whereas, mice immunised with yMSP4/5 mainly produced antibodies of the IgG1 isotype. The differences in antibody titres and subtype distribution may account for the observed differences in protective efficacy of these protein preparations. Levels of protective efficacy of MSP4/5 were compared with that obtained using P. yoelii MSP1 produced in S. cerevisiae. Levels of protection induced by E. coli derived MSP4/5 were superior to those induced by MSP1 which in turn were better than those induced by yeast-derived MSP4/5.


Subject(s)
Antigens, Protozoan/immunology , Escherichia coli/metabolism , Malaria Vaccines/immunology , Malaria/prevention & control , Membrane Proteins/immunology , Plasmodium yoelii/immunology , Protozoan Proteins/immunology , Saccharomyces cerevisiae/metabolism , Animals , Antibodies, Protozoan/biosynthesis , Antibodies, Protozoan/immunology , Antigens, Protozoan/biosynthesis , Antigens, Protozoan/genetics , Antigens, Protozoan/isolation & purification , Female , Immunoglobulin G/biosynthesis , Immunoglobulin G/immunology , Immunoglobulin Isotypes/biosynthesis , Immunoglobulin Isotypes/immunology , Malaria/immunology , Malaria Vaccines/biosynthesis , Malaria Vaccines/genetics , Malaria Vaccines/isolation & purification , Membrane Proteins/biosynthesis , Membrane Proteins/genetics , Membrane Proteins/isolation & purification , Mice , Mice, Inbred BALB C , Parasitemia/immunology , Plasmodium yoelii/genetics , Protein Structure, Tertiary , Protozoan Proteins/biosynthesis , Protozoan Proteins/genetics , Protozoan Proteins/isolation & purification , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/immunology , Recombinant Fusion Proteins/isolation & purification , Species Specificity , Structure-Activity Relationship , Vaccination
17.
J Autoimmun ; 17(1): 89-98, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11488641

ABSTRACT

The characterization of differentially expressed genes provides a powerful tool for identifying molecules that may be involved in the pathogenesis of disease. We have used two independent techniques to identify overexpressed transcripts in bile duct cells and in liver from patients with primary biliary cirrhosis (PBC). In the first method, we used suppressive subtractive hybridization to compare mRNA from isolated PBC bile duct epithelial cells (BECs) to normal BECs and identified 71 clones as transcribed at higher levels in PBC-BECs. Amongst these clones, 62/71 had matches in a non-redundant nucleotide database and 9/71 had matches in an EST database. Of the 62 clones, 51/62 include a complexity of genes involved in cell proliferation, signal transduction, transcription regulation, RNA processing, carbohydrate metabolism and hypothetical/unknown proteins; 4/62 were identified as interstitial collagenase and collagenase precursors, 4/62 as ribosomal proteins, 3/62 as mitochondrial DNA. The mitochondrial cDNA sequences included cytochrome c oxidase, Wnt-13, and the pHL gene, a c-myc oncogene containing coxIII sequence. In the second method, we constructed cDNA libraries from three different PBC livers and sequenced a total of 12,324 independent clones. These 12,324 clones underwent virtual subtraction with 2,814,148 independent clones from Incyte LifeSeq libraries. Twenty one sequences were identified as unique to PBC liver. Collectively, these approaches identified a number of genes involved in signalling, RNA processing, mitochondrial function, inflammation, and fibrosis. Interestingly, both Wnt-13 and Notch transcripts are overexpressed in PBC liver. Further studies are needed to focus on the significance of these genes during the natural history of disease.


Subject(s)
Bile Ducts/metabolism , Epithelial Cells/metabolism , Gene Expression Regulation , Liver Cirrhosis, Biliary/genetics , Liver/metabolism , Bile Ducts/pathology , Epithelial Cells/pathology , Gene Expression Regulation/genetics , Gene Library , Humans , Liver/pathology , Liver Cirrhosis, Biliary/pathology , Nucleic Acid Hybridization/methods , RNA, Messenger/biosynthesis , Sequence Homology, Nucleic Acid
18.
J Immunol ; 167(5): 2956-63, 2001 Sep 01.
Article in English | MEDLINE | ID: mdl-11509645

ABSTRACT

In primary biliary cirrhosis (PBC), the major autoepitope recognized by both T and B cells is the inner lipoyl domain of the E2 component of pyruvate dehydrogenase. To address the hypothesis that PBC is induced by xenobiotic exposure, we took advantage of ab initio quantum chemistry and synthesized the inner lipoyl domain of E2 component of pyruvate dehydrogenase, replacing the lipoic acid moiety with synthetic structures designed to mimic a xenobiotically modified lipoyl hapten, and we quantitated the reactivity of these structures with sera from PBC patients. Interestingly, antimitochondrial Abs from all seropositive patients with PBC, but no controls, reacted against 3 of the 18 organic modified autoepitopes significantly better than to the native domain. By structural analysis, the features that correlated with autoantibody binding included synthetic domain peptides with a halide or methyl halide in the meta or para position containing no strong hydrogen bond accepting groups on the phenyl ring of the lysine substituents, and synthetic domain peptides with a relatively low rotation barrier about the linkage bond. Many chemicals including pharmaceuticals and household detergents have the potential to form such halogenated derivatives as metabolites. These data reflect the first time that an organic compound has been shown to serve as a mimeotope for an autoantigen and further provide evidence for a potential mechanism by which environmental organic compounds may cause PBC.


Subject(s)
Liver Cirrhosis, Biliary/etiology , Liver Cirrhosis, Biliary/immunology , Molecular Mimicry , Pyruvate Dehydrogenase Complex/immunology , Xenobiotics/immunology , Xenobiotics/toxicity , Amino Acid Sequence , Autoantibodies/biosynthesis , Autoantigens/chemistry , Epitopes/chemistry , Humans , Liver Cirrhosis, Biliary/enzymology , Molecular Structure , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/immunology , Pyruvate Dehydrogenase Complex/chemistry , Pyruvate Dehydrogenase Complex/genetics , Thioctic Acid/chemistry , Xenobiotics/chemistry
19.
Infect Immun ; 69(7): 4390-7, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11401978

ABSTRACT

Merozoite surface protein 4 (MSP4) of Plasmodium falciparum is a glycosylphosphatidylinositol-anchored integral membrane protein that is being developed as a component of a subunit vaccine against malaria. We report here the measurement of naturally acquired antibodies to MSP4 in a population of individuals living in the Khanh-Hoa region of Vietnam, an area where malaria is highly endemic. Antibodies to MSP4 were detected in 94% of the study population at titers of 1:5,000 or greater. Two forms of recombinant MSP4 produced in either Escherichia coli or Saccharomyces cerevisiae were compared as substrates in the enzyme-linked immunosorbent assay. There was an excellent correlation between reactivity measured to either, although the yeast substrate was recognized by a higher percentage of sera. Four different regions of MSP4 were recognized by human antibodies, demonstrating that there are at least four distinct epitopes in this protein. In the carboxyl terminus, where the single epidermal growth factor-like domain is located, the reactive epitope(s) was shown to be conformation dependent, as disruption of the disulfide bonds almost completely abolished reactivity with human antibodies. The anti-MSP4 antibodies were mainly of the immunoglobulin G1 (IgG1) and IgG3 subclasses, suggesting that such antibodies may play a role in opsonization and complement-mediated lysis of free merozoites. Individuals in the study population were drug-cured and followed up for 6 months; no significant correlation was observed between the anti-MSP4 antibodies and the absence of parasitemia during the surveillance period. As a comparison, antibodies to MSP1(19), a leading vaccine candidate, were measured, and no correlation with protection was observed in these individuals. The anti-MSP1(19) antibodies were predominantly of the IgG1 isotype, in contrast to the IgG3 predominance noted for MSP4.


Subject(s)
Antibodies, Protozoan/blood , Antigens, Protozoan/immunology , Endemic Diseases , Malaria, Falciparum/immunology , Protozoan Proteins/immunology , Adolescent , Adult , Animals , Antibodies, Protozoan/immunology , Antibody Specificity , Child , Epitopes, B-Lymphocyte/immunology , Humans , Immunoglobulin Isotypes , Malaria, Falciparum/blood , Malaria, Falciparum/epidemiology , Malaria, Falciparum/prevention & control , Merozoite Surface Protein 1/immunology , Middle Aged , Plasmodium falciparum/immunology , Prevalence , Time Factors , Vietnam/epidemiology
20.
Semin Gastrointest Dis ; 12(2): 89-102, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11352123

ABSTRACT

Primary biliary cirrhosis (PBC) is a chronic cholestatic liver disease that predominantly affects middle-aged women; fatigue and pruritus are the most common symptoms at presentation. Liver function tests are consistent with cholestasis and reveal an elevation of serum alkaline phosphatase and gamma-glutamyl transpeptidase with or without elevation of aminotransferase levels. Histologically, PBC is characterized by the destruction of the intrahepatic small bile ducts and subsequently fibrosis. The serological hallmark of the disease is the presence of antimitochondrial antibodies, which are found in 95% of patients with PBC. The antimitochondrial antibodies are directed against the 2-oxo-acid dehydrogenase complexes located on the inner membrane of the mitochondria. PBC generally slowly progresses, even over decades, and may lead to liver failure. In symptomatic patients, advanced age, elevated serum bilirubin levels, decreased serum albumin levels, and cirrhosis each correlate with shortened survival. Immunosuppressive and anti-inflammatory drugs have been used in the treatment of PBC based on the presumed autoimmune pathogenesis, but satisfactory agents leading to complete reversal or cure of the disease are not available. At present ursodeoxycholic acid appears to be the only effective therapy in preventing or delaying the need for liver transplantation and improving survival. However, a number of patients receiving ursodeoxycholic acid still develop progressive disease and require transplantation; transplantation is the only effective therapy at the end stage of the disease.


Subject(s)
Liver Cirrhosis, Biliary/diagnosis , Sjogren's Syndrome/diagnosis , Adult , Female , Humans , Liver Cirrhosis, Biliary/blood , Liver Cirrhosis, Biliary/complications , Liver Cirrhosis, Biliary/immunology , Liver Function Tests , Liver Transplantation , Sjogren's Syndrome/blood , Sjogren's Syndrome/complications
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