Stellarators with Permanent Magnets.

It is shown that the magnetic-field coils of a stellarator can, at least in principle, be substantially simplified by the use of permanent magnets. Such magnets cannot create toroidal magnetic flux, but they can be used to shape the plasma and thus to create poloidal flux and rotational transform, thereby easing the requirements on the magnetic-field coils. As an example, a quasiaxisymmetric stellarator configuration is constructed with only 8 circular coils (all identical) and permanent magnets.

Wide coding: Tetris, Morse and, perhaps, language.

Code biology uses protein synthesis to pursue how living systems fabricate themselves. Weight falls on intermediary systems or adaptors that enable translated DNA to function within a cellular apparatus. Specifically, code intermediaries bridge between independent worlds (e.g. those of RNAs and proteins) to grant functional lee-way to the resulting products. Using this Organic Code (OC) model, the paper draws parallels with how people use artificial codes. As illustrated by Tetris and Morse, human players/signallers manage code functionality by using bodies as (or like) adaptors. They act as coding intermediaries who use lee-way alongside "a small set of arbitrary rules selected from a potentially unlimited number in order to ensure a specific correspondence between two independent worlds" (Barbieri, 2015). As with deep learning, networked bodily systems mesh inputs from a coded past with current inputs. Received models reduce 'use' of codes to a run-time or program like process. They overlook how molecular memory is extended by living apparatuses that link codes with functioning adaptors. In applying the OC model to humans, the paper connects Turing's (1937) view of thinking to Wilson's (2004) appeal to wide cognition. The approach opens up a new view of Kirsh and Maglio's (1994) seminal studies on Tetris. As players use an interface that actualizes a code or program, their goal-directed (i.e. 'pragmatic') actions co-occur with adaptor-like 'filling in' (i.e. 'epistemic' moves). In terms of the OC model, flexible functions derive from, not actions, but epistemic dynamics that arise in the human-interface-computer system. Second, I pursue how a Morse radio operator uses dibs and dabs that enable the workings of an artificial code. While using knowledge ('the rules') to resemiotize by tapping on a transmission key, bodily dynamics are controlled by adaptor-like resources. Finally, turning to language, I sketch how the model applies to writing and reading. Like Morse operators, writers resemiotize a code-like domain of alphabets, spelling-systems etc. by acting as (or like) bodily adaptors. Further, in attending to a text-interface (symbolizations), a reader relies on filling-in that is (or feels) epistemic. Given that humans enact or mimic adaptor functions, it is likely that the OC model also applies to multi-modal language.

Histone deacetylase (HDAC) 1 and 2 complexes regulate both histone acetylation and crotonylation in vivo.

Proteomic analysis of histones has shown that they are subject to a superabundance of acylations, which extend far beyond acetylation, to include: crotonylation, propionylation, butyrylation, malonylation, succinylation, ß-hydroxybutyrylation and 2-hydroxyisobutyrylation. To date, much of the functional data has focussed on histone crotonylation which, similar to acetylation, has been associated with positive gene regulation and is added by the acyltransferase, p300. Although Sirtuins 1-3, along with HDAC3, have been shown to possess decrotonylase activity in vitro, there is relatively little known about the regulation of histone crotonylation in vivo. Here we show that Histone Deacetylase 1 and 2 (HDAC1/2), the catalytic core of numerous co-repressor complexes, are important histone decrotonylase enzymes. A ternary complex of HDAC1/CoREST1/LSD1 is able to hydrolyse both histone H3 Lys18-acetyl (H3K18ac) and H3 Lys18-crotonyl (H3K18cr) peptide substrates. Genetic deletion of HDAC1/2 in ES cells increases global levels of histone crotonylation and causes an 85% reduction in total decrotonylase activity. Furthermore, we mapped H3K18cr in cells using ChIP-seq, with and without HDAC1/2, and observed increased levels of crotonylation, which largely overlaps with H3K18ac in the vicinity of transcriptional start sites. Collectively, our data indicate that HDAC1/2 containing complexes are critical regulators of histone crotonylation in vivo.

Jupiter's magnetosphere and aurorae observed by the Juno spacecraft during its first polar orbits.

The Juno spacecraft acquired direct observations of the jovian magnetosphere and auroral emissions from a vantage point above the poles. Juno's capture orbit spanned the jovian magnetosphere from bow shock to the planet, providing magnetic field, charged particle, and wave phenomena context for Juno's passage over the poles and traverse of Jupiter's hazardous inner radiation belts. Juno's energetic particle and plasma detectors measured electrons precipitating in the polar regions, exciting intense aurorae, observed simultaneously by the ultraviolet and infrared imaging spectrographs. Juno transited beneath the most intense parts of the radiation belts, passed about 4000 kilometers above the cloud tops at closest approach, well inside the jovian rings, and recorded the electrical signatures of high-velocity impacts with small particles as it traversed the equator.

Nonlinear Stability and Saturation of Ballooning Modes in Tokamaks.

The theory of tokamak stability to nonlinear "ballooning" displacements of elliptical magnetic flux tubes is presented. Above a critical pressure profile the energy stored in the plasma may be lowered by finite (but not infinitesimal) displacements of such tubes (metastability). Above a higher pressure profile, the linear stability boundary, such tubes are linearly and nonlinearly unstable. The predicted saturated flux tube displacement can be of the order of the pressure gradient scale length. Plasma transport from these displaced flux tubes may explain the rapid loss of confinement in some experiments.

Explosive instability and erupting flux tubes in a magnetized plasma.

The eruption of multiple flux tubes in a magnetized plasma is proposed as a mechanism for explosive release of energy in plasmas. A significant fraction of the linearly stable isolated flux tubes are shown to be metastable in a box model magnetized atmosphere in which ends of the field lines are embedded in conducting walls. The energy released by destabilizing such field lines can be a large proportion of the gravitational energy stored in the system. This energy can be released in a fast dynamical time.

Saturn's dayside ultraviolet auroras: Evidence for morphological dependence on the direction of the upstream interplanetary magnetic field.

We examine a unique data set from seven Hubble Space Telescope (HST) "visits" that imaged Saturn's northern dayside ultraviolet emissions exhibiting usual circumpolar "auroral oval" morphologies, during which Cassini measured the interplanetary magnetic field (IMF) upstream of Saturn's bow shock over intervals of several hours. The auroras generally consist of a dawn arc extending toward noon centered near ∼15° colatitude, together with intermittent patchy forms at ∼10° colatitude and poleward thereof, located between noon and dusk. The dawn arc is a persistent feature, but exhibits variations in position, width, and intensity, which have no clear relationship with the concurrent IMF. However, the patchy postnoon auroras are found to relate to the (suitably lagged and averaged) IMF Bz , being present during all four visits with positive Bz and absent during all three visits with negative Bz . The most continuous such forms occur in the case of strongest positive Bz . These results suggest that the postnoon forms are associated with reconnection and open flux production at Saturn's magnetopause, related to the similarly interpreted bifurcated auroral arc structures previously observed in this local time sector in Cassini Ultraviolet Imaging Spectrograph data, whose details remain unresolved in these HST images. One of the intervals with negative IMF Bz however exhibits a prenoon patch of very high latitude emission extending poleward of the dawn arc to the magnetic/spin pole, suggestive of the occurrence of lobe reconnection. Overall, these data provide evidence of significant IMF dependence in the morphology of Saturn's dayside auroras. KEY POINTS: We examine seven cases of joint HST Saturn auroral images and Cassini IMF dataThe persistent but variable dawn arc shows no obvious IMF dependencePatchy postnoon auroras are present for northward IMF but not for southward IMF.

Dynamic auroral storms on Saturn as observed by the Hubble Space Telescope.

We present observations of significant dynamics within two UV auroral storms observed on Saturn using the Hubble Space Telescope in April/May 2013. Specifically, we discuss bursts of auroral emission observed at the poleward boundary of a solar wind-induced auroral storm, propagating at ∼330% rigid corotation from near ∼01 h LT toward ∼08 h LT. We suggest that these are indicative of ongoing, bursty reconnection of lobe flux in the magnetotail, providing strong evidence that Saturn's auroral storms are caused by large-scale flux closure. We also discuss the later evolution of a similar storm and show that the emission maps to the trailing region of an energetic neutral atom enhancement. We thus identify the auroral form with the upward field-aligned continuity currents flowing into the associated partial ring current.

Multiscale gyrokinetics for rotating tokamak plasmas: fluctuations, transport and energy flows.

This paper presents a complete theoretical framework for studying turbulence and transport in rapidly rotating tokamak plasmas. The fundamental scale separations present in plasma turbulence are codified as an asymptotic expansion in the ratio ε = ρi/α of the gyroradius to the equilibrium scale length. Proceeding order by order in this expansion, a set of coupled multiscale equations is developed. They describe an instantaneous equilibrium, the fluctuations driven by gradients in the equilibrium quantities, and the transport-timescale evolution of mean profiles of these quantities driven by the interplay between the equilibrium and the fluctuations. The equilibrium distribution functions are local Maxwellians with each flux surface rotating toroidally as a rigid body. The magnetic equilibrium is obtained from the generalized Grad-Shafranov equation for a rotating plasma, determining the magnetic flux function from the mean pressure and velocity profiles of the plasma. The slow (resistive-timescale) evolution of the magnetic field is given by an evolution equation for the safety factor q. Large-scale deviations of the distribution function from a Maxwellian are given by neoclassical theory. The fluctuations are determined by the 'high-flow' gyrokinetic equation, from which we derive the governing principle for gyrokinetic turbulence in tokamaks: the conservation and local (in space) cascade of the free energy of the fluctuations (i.e. there is no turbulence spreading). Transport equations for the evolution of the mean density, temperature and flow velocity profiles are derived. These transport equations show how the neoclassical and fluctuating corrections to the equilibrium Maxwellian act back upon the mean profiles through fluxes and heating. The energy and entropy conservation laws for the mean profiles are derived from the transport equations. Total energy, thermal, kinetic and magnetic, is conserved and there is no net turbulent heating. Entropy is produced by the action of fluxes flattening gradients, Ohmic heating and the equilibration of interspecies temperature differences. This equilibration is found to include both turbulent and collisional contributions. Finally, this framework is condensed, in the low-Mach-number limit, to a more concise set of equations suitable for numerical implementation.

The domination of Saturn's low-latitude ionosphere by ring 'rain'.

Saturn's ionosphere is produced when the otherwise neutral atmosphere is exposed to a flow of energetic charged particles or solar radiation. At low latitudes the solar radiation should result in a weak planet-wide glow in the infrared, corresponding to the planet's uniform illumination by the Sun. The observed electron density of the low-latitude ionosphere, however, is lower and its temperature higher than predicted by models. A planet-to-ring magnetic connection has been previously suggested, in which an influx of water from the rings could explain the lower-than-expected electron densities in Saturn's atmosphere. Here we report the detection of a pattern of features, extending across a broad latitude band from 25 to 60 degrees, that is superposed on the lower-latitude background glow, with peaks in emission that map along the planet's magnetic field lines to gaps in Saturn's rings. This pattern implies the transfer of charged species derived from water from the ring-plane to the ionosphere, an influx on a global scale, flooding between 30 to 43 per cent of the surface of Saturn's upper atmosphere. This ring 'rain' is important in modulating ionospheric emissions and suppressing electron densities.

Experimental signatures of critically balanced turbulence in MAST.

Beam emission spectroscopy (BES) measurements of ion-scale density fluctuations in the MAST tokamak are used to show that the turbulence correlation time, the drift time associated with ion temperature or density gradients, the particle (ion) streaming time along the magnetic field, and the magnetic drift time are consistently comparable, suggesting a "critically balanced" turbulence determined by the local equilibrium. The resulting scalings of the poloidal and radial correlation lengths are derived and tested. The nonlinear time inferred from the density fluctuations is longer than the other times; its ratio to the correlation time scales as ν(*i)(-0.8 ± 0.1), where ν(*i) = ion collision rate/streaming rate. This is consistent with turbulent decorrelation being controlled by a zonal component, invisible to the BES, with an amplitude exceeding those of the drift waves by ∼ ν(*i)(-0.8).

Zero-turbulence manifold in a toroidal plasma.

Sheared toroidal flows can cause bifurcations to zero-turbulent-transport states in tokamak plasmas. The maximum temperature gradients that can be reached are limited by subcritical turbulence driven by the parallel velocity gradient. Here it is shown that q/ϵ (magnetic field pitch/inverse aspect ratio) is a critical control parameter for sheared tokamak turbulence. By reducing q/ϵ, far higher temperature gradients can be achieved without triggering turbulence, in some instances comparable to those found experimentally in transport barriers. The zero-turbulence manifold is mapped out, in the zero-magnetic-shear limit, over the parameter space (γ(E), q/ϵ, R/L(T)), where γ(E) is the perpendicular flow shear and R/L(T) is the normalized inverse temperature gradient scale. The extent to which it can be constructed from linear theory is discussed.

Evaluation of safety and human tolerance of the oral probiotic Streptococcus salivarius K12: a randomized, placebo-controlled, double-blind study.

Streptococcus salivarius is naturally a predominant member of the human oropharynx and the commercial probiotic strain K12 has been consumed for more than a decade. The present study examines the health responses of human volunteers to oral ingestion of high doses of S. salivarius K12. A randomized group of 53 subjects received a dose of 1 × 10(10)cfu S. salivarius K12 (N=25) or placebo (N=28) for 28 days, followed by a 28-day wash out period. Blood, urine and saliva samples were collected at baseline and following treatment and analyzed, while the oral and gastrointestinal tolerance of the subjects to the dosing regimen was determined by use of questionnaires. Adverse events (AE)s were recorded for both groups. No statistically significant differences between the probiotic and placebo treated groups were detected in either the blood clinical chemistry or hematology results (P>0.05). The questionnaire responses of the subjects indicated that both treatments were well tolerated. The frequency and intensity of AEs was similar in the two groups. This data demonstrates that the daily ingestion of S. salivarius K12 over a 28-day period does not adversely affect the human host and supports the safety of its oral delivery in a food-based carrier.

Turbulent transport in tokamak plasmas with rotational shear.

Nonlinear gyrokinetic simulations are conducted to investigate turbulent transport in tokamak plasmas with rotational shear. At sufficiently large flow shears, linear instabilities are suppressed, but transiently growing modes drive subcritical turbulence whose amplitude increases with flow shear. This leads to a local minimum in the heat flux, indicating an optimal E×B shear value for plasma confinement. Local maxima in the momentum fluxes are observed, implying the possibility of bifurcations in the E×B shear. The critical temperature gradient for the onset of turbulence increases with flow shear at low flow shears; at higher flow shears, the dependence of heat flux on temperature gradient becomes less stiff. The turbulent Prandtl number is found to be largely independent of temperature and flow gradients, with a value close to unity.

Momentum injection in tokamak plasmas and transitions to reduced transport.

The effect of momentum injection on the temperature gradient in tokamak plasmas is studied. A plausible scenario for transitions to reduced transport regimes is proposed. The transition happens when there is sufficient momentum input so that the velocity shear can suppress or reduce the turbulence. However, it is possible to drive too much velocity shear and rekindle the turbulent transport. The optimal level of momentum injection is determined. The reduction in transport is maximized in the regions of low or zero magnetic shear.

Transport bifurcation in a rotating tokamak plasma.

The effect of flow shear on turbulent transport in tokamaks is studied numerically in the experimentally relevant limit of zero magnetic shear. It is found that the plasma is linearly stable for all nonzero flow shear values, but that subcritical turbulence can be sustained nonlinearly at a wide range of temperature gradients. Flow shear increases the nonlinear temperature gradient threshold for turbulence but also increases the sensitivity of the heat flux to changes in the temperature gradient, except over a small range near the threshold where the sensitivity is decreased. A bifurcation in the equilibrium gradients is found: for a given input of heat, it is possible, by varying the applied torque, to trigger a transition to significantly higher temperature and flow gradients.

Formation of plasmoid chains in magnetic reconnection.

A detailed numerical study of magnetic reconnection in resistive MHD for very large, previously inaccessible, Lundquist numbers (10(4) 10(4).

Nonlinear phase mixing and phase-space cascade of entropy in gyrokinetic plasma turbulence.

Electrostatic turbulence in weakly collisional, magnetized plasma can be interpreted as a cascade of entropy in phase space, which is proposed as a universal mechanism for dissipation of energy in magnetized plasma turbulence. When the nonlinear decorrelation time at the scale of the thermal Larmor radius is shorter than the collision time, a broad spectrum of fluctuations at sub-Larmor scales is numerically found in velocity and position space, with theoretically predicted scalings. The results are important because they identify what is probably a universal Kolmogorov-like regime for kinetic turbulence; and because any physical process that produces fluctuations of the gyrophase-independent part of the distribution function may, via the entropy cascade, result in turbulent heating at a rate that increases with the fluctuation amplitude, but is independent of the collision frequency.

Generation of magnetic field by combined action of turbulence and shear.

The feasibility of a mean-field dynamo in nonhelical turbulence with a superimposed linear shear is studied numerically in elongated shearing boxes. Exponential growth of the magnetic field at scales much larger than the outer scale of the turbulence is found. The characteristic scale of the field is lB proportional S(-1/2) and the growth rate is gamma proportional S, where S is the shearing rate. This newly discovered shear dynamo effect potentially represents a very generic mechanism for generating large-scale magnetic fields in a broad class of astrophysical systems with spatially coherent mean flows.