Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 22
Filter
Add more filters










Publication year range
1.
Plant Physiol ; 194(1): 243-257, 2023 Dec 30.
Article in English | MEDLINE | ID: mdl-37399189

ABSTRACT

Plant lignocellulosic biomass, i.e. secondary cell walls of plants, is a vital alternative source for bioenergy. However, the acetylation of xylan in secondary cell walls impedes the conversion of biomass to biofuels. Previous studies have shown that REDUCED WALL ACETYLATION (RWA) proteins are directly involved in the acetylation of xylan but the regulatory mechanism of RWAs is not fully understood. In this study, we demonstrate that overexpression of a Populus trichocarpa PtRWA-C gene increases the level of xylan acetylation and increases the lignin content and S/G ratio, ultimately yielding poplar woody biomass with reduced saccharification efficiency. Furthermore, through gene coexpression network and expression quantitative trait loci (eQTL) analysis, we found that PtRWA-C was regulated not only by the secondary cell wall hierarchical regulatory network but also by an AP2 family transcription factor HARDY (HRD). Specifically, HRD activates PtRWA-C expression by directly binding to the PtRWA-C promoter, which is also the cis-eQTL for PtRWA-C. Taken together, our findings provide insights into the functional roles of PtRWA-C in xylan acetylation and consequently saccharification and shed light on synthetic biology approaches to manipulate this gene and alter cell wall properties. These findings have substantial implications for genetic engineering of woody species, which could be used as a sustainable source of biofuels, valuable biochemicals, and biomaterials.


Subject(s)
Populus , Populus/genetics , Populus/metabolism , Xylans/metabolism , Acetylation , Biomass , Biofuels/analysis , Plants/metabolism , Cell Wall/metabolism , Lignin/metabolism
2.
BMC Genomics ; 23(1): 144, 2022 Feb 17.
Article in English | MEDLINE | ID: mdl-35176993

ABSTRACT

BACKGROUND: DNA methylation is thought to influence the expression of genes, especially in response to changing environmental conditions and developmental changes. Sugar beet (Beta vulgaris ssp. vulgaris), and other biennial or perennial plants are inevitably exposed to fluctuating temperatures throughout their lifecycle and might even require such stimulus to acquire floral competence. Therefore, plants such as beets, need to fine-tune their epigenetic makeup to ensure phenotypic plasticity towards changing environmental conditions while at the same time steering essential developmental processes. Different crop species may show opposing reactions towards the same abiotic stress, or, vice versa, identical species may respond differently depending on the specific kind of stress. RESULTS: In this study, we investigated common effects of cold treatment on genome-wide DNA methylation and gene expression of two Beta vulgaris accessions via multi-omics data analysis. Cold exposure resulted in a pronounced reduction of DNA methylation levels, which particularly affected methylation in CHH context (and to a lesser extent CHG) and was accompanied by transcriptional downregulation of the chromomethyltransferase CMT2 and strong upregulation of several genes mediating active DNA demethylation. CONCLUSION: Integration of methylomic and transcriptomic data revealed that, rather than methylation having directly influenced expression, epigenetic modifications correlated with changes in expression of known players involved in DNA (de)methylation. In particular, cold triggered upregulation of genes putatively contributing to DNA demethylation via the ROS1 pathway. Our observations suggest that these transcriptional responses precede the cold-induced global DNA-hypomethylation in non-CpG, preparing beets for additional transcriptional alterations necessary for adapting to upcoming environmental changes.


Subject(s)
Beta vulgaris , Beta vulgaris/genetics , DNA Methylation , Epigenesis, Genetic , Gene Expression , Protein-Tyrosine Kinases/genetics , Protein-Tyrosine Kinases/metabolism , Proto-Oncogene Proteins/genetics , Sugars/metabolism
3.
Front Plant Sci ; 12: 715767, 2021.
Article in English | MEDLINE | ID: mdl-34539707

ABSTRACT

Sugar beet (Beta vulgaris subsp. vulgaris) is the exclusive source of sugar in the form of sucrose in temperate climate zones. Sugar beet is grown there as an annual crop from spring to autumn because of the damaging effect of freezing temperatures to taproot tissue. A collection of hybrid and non-hybrid sugar beet cultivars was tested for winter survival rates and freezing tolerance. Three genotypes with either low or high winter survival rates were selected for detailed study of their response to frost. These genotypes differed in the severity of frost injury in a defined inner region in the upper part of the taproot, the so-called pith. We aimed to elucidate genotype- and tissue-dependent molecular processes during freezing and combined analyses of sugar beet anatomy and physiology with transcriptomic and metabolite profiles of leaf and taproot tissues at low temperatures. Freezing temperatures induced strong downregulation of photosynthesis in leaves, generation of reactive oxygen species (ROS), and ROS-related gene expression in taproots. Simultaneously, expression of genes involved in raffinose metabolism, as well as concentrations of raffinose and its intermediates, increased markedly in both leaf and taproot tissue at low temperatures. The accumulation of raffinose in the pith tissue correlated with freezing tolerance of the three genotypes. We discuss a protective role for raffinose and its precursors against freezing damage of sugar beet taproot tissue.

4.
Plant Cell ; 32(10): 3206-3223, 2020 10.
Article in English | MEDLINE | ID: mdl-32769131

ABSTRACT

During their first year of growth, overwintering biennial plants transport Suc through the phloem from photosynthetic source tissues to storage tissues. In their second year, they mobilize carbon from these storage tissues to fuel new growth and reproduction. However, both the mechanisms driving this shift and the link to reproductive growth remain unclear. During vegetative growth, biennial sugar beet (Beta vulgaris) maintains a steep Suc concentration gradient between the shoot (source) and the taproot (sink). To shift from vegetative to generative growth, they require a chilling phase known as vernalization. We studied sugar beet sink-source dynamics upon vernalization and showed that before flowering, the taproot underwent a reversal from a sink to a source of carbohydrates. This transition was induced by transcriptomic and functional reprogramming of sugar beet tissue, resulting in a reversal of flux direction in the phloem. In this transition, the vacuolar Suc importers and exporters TONOPLAST SUGAR TRANSPORTER2;1 and SUCROSE TRANSPORTER4 were oppositely regulated, leading to the mobilization of sugars from taproot storage vacuoles. Concomitant changes in the expression of floral regulator genes suggest that these processes are a prerequisite for bolting. Our data will help both to dissect the metabolic and developmental triggers for bolting and to identify potential targets for genome editing and breeding.


Subject(s)
Beta vulgaris/physiology , Phloem/metabolism , Plant Proteins/metabolism , Plant Shoots/metabolism , Carbohydrate Metabolism , Carbon Dioxide/metabolism , Cold Temperature , Esculin/metabolism , Gene Expression Profiling , Gene Expression Regulation, Plant , Phloem/genetics , Photosynthesis/physiology , Plant Proteins/genetics , Plant Roots/genetics , Plant Roots/metabolism , Plant Shoots/genetics , Sucrose/metabolism , Sugars/metabolism , Vacuoles/genetics , Vacuoles/metabolism
5.
Nat Plants ; 5(7): 676-680, 2019 07.
Article in English | MEDLINE | ID: mdl-31285560

ABSTRACT

The molecular mechanisms underlying mycorrhizal symbioses, the most ubiquitous and impactful mutualistic plant-microbial interaction in nature, are largely unknown. Through genetic mapping, resequencing and molecular validation, we demonstrate that a G-type lectin receptor-like kinase (lecRLK) mediates the symbiotic interaction between Populus and the ectomycorrhizal fungus Laccaria bicolor. This finding uncovers an important molecular step in the establishment of symbiotic plant-fungal associations and provides a molecular target for engineering beneficial mycorrhizal relationships.


Subject(s)
Laccaria/physiology , Mycorrhizae/physiology , Plant Proteins/metabolism , Populus/enzymology , Populus/microbiology , Protein Kinases/metabolism , Symbiosis , Laccaria/genetics , Mycorrhizae/genetics , Plant Proteins/genetics , Plant Roots/enzymology , Plant Roots/genetics , Plant Roots/microbiology , Plant Roots/physiology , Populus/genetics , Populus/physiology , Protein Kinases/genetics
6.
Plant Methods ; 12: 16, 2016.
Article in English | MEDLINE | ID: mdl-26889205

ABSTRACT

BACKGROUND: Genetic engineering of plants that results in successful establishment of new biochemical or regulatory pathways requires stable introduction of one or more genes into the plant genome. It might also be necessary to down-regulate or turn off expression of endogenous genes in order to reduce activity of competing pathways. An established way to knockdown gene expression in plants is expressing a hairpin-RNAi construct, eventually leading to degradation of a specifically targeted mRNA. Knockdown of multiple genes that do not share homologous sequences is still challenging and involves either sophisticated cloning strategies to create vectors with different serial expression constructs or multiple transformation events that is often restricted by a lack of available transformation markers. RESULTS: Synthetic RNAi fragments were assembled in yeast carrying homologous sequences to six or seven non-family genes and introduced into pAGRIKOLA. Transformation of Arabidopsis thaliana and subsequent expression analysis of targeted genes proved efficient knockdown of all target genes. CONCLUSIONS: We present a simple and cost-effective method to create constructs to simultaneously knockdown multiple non-family genes or genes that do not share sequence homology. The presented method can be applied in plant and animal synthetic biology as well as traditional plant and animal genetic engineering.

7.
Mol Plant ; 8(8): 1237-52, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25778986

ABSTRACT

Natural illumination conditions are highly variable and because of their sessile life style, plants are forced to acclimate to them at the cellular and molecular level. Changes in light intensity or quality induce changes in the reduction/oxidation (redox) state of the photosynthetic electron chain that acts as a trigger for compensatory acclimation responses comprising functional and structural adjustments of photosynthesis and metabolism. Such responses include redox-controlled changes in plant gene expression in the nucleus and organelles. Here we describe a strategy for the identification of early redox-regulated genes (ERGs) in the nucleus of the model organism Arabidopsis thaliana that respond significantly 30 or 60 min after the generation of a reduction signal in the photosynthetic electron transport chain. By comparing the response of wild-type plants with that of the acclimation mutant stn7, we could specifically identify ERGs. The results reveal a significant impact of chloroplast redox signals on distinct nuclear gene groups including genes for the mitochondrial electron transport chain, tetrapyrrole biosynthesis, carbohydrate metabolism, and signaling lipid synthesis. These expression profiles are clearly different from those observed in response to the reduction of photosynthetic electron transport by high light treatments. Thus, the ERGs identified are unique to redox imbalances in photosynthetic electron transport and were then used for analyzing potential redox-responsive cis-elements, trans-factors, and chromosomal regulatory hot spots. The data identify a novel redox-responsive element and indicate extensive redox control at transcriptional and chromosomal levels that point to an unprecedented impact of redox signals on epigenetic processes.


Subject(s)
Arabidopsis/genetics , Arabidopsis/radiation effects , Cell Nucleus/genetics , Light , Plastids/metabolism , Signal Transduction/radiation effects , Acclimatization/drug effects , Acclimatization/genetics , Arabidopsis/physiology , Cell Nucleus/drug effects , Cell Nucleus/radiation effects , Chromatin Assembly and Disassembly/drug effects , Chromatin Assembly and Disassembly/genetics , Chromatin Assembly and Disassembly/radiation effects , Dibromothymoquinone/pharmacology , Electron Transport/drug effects , Electron Transport/radiation effects , Gene Expression Regulation, Plant/drug effects , Genes, Plant , Mitochondria/drug effects , Mitochondria/metabolism , Mitochondria/radiation effects , Mutation/genetics , Oxidation-Reduction/drug effects , Oxidation-Reduction/radiation effects , Photosynthesis/drug effects , Photosynthesis/genetics , Photosynthesis/radiation effects , Plastids/drug effects , Plastids/radiation effects , RNA, Messenger/genetics , RNA, Messenger/metabolism , Reactive Oxygen Species/metabolism , Regulatory Sequences, Nucleic Acid/genetics , Signal Transduction/drug effects , Signal Transduction/genetics , Tetrapyrroles/metabolism , Time Factors , Transcription, Genetic/drug effects
8.
BMC Genomics ; 16: 24, 2015 Jan 23.
Article in English | MEDLINE | ID: mdl-25613058

ABSTRACT

BACKGROUND: QTL cloning for the discovery of genes underlying polygenic traits has historically been cumbersome in long-lived perennial plants like Populus. Linkage disequilibrium-based association mapping has been proposed as a cloning tool, and recent advances in high-throughput genotyping and whole-genome resequencing enable marker saturation to levels sufficient for association mapping with no a priori candidate gene selection. Here, multiyear and multienvironment evaluation of cell wall phenotypes was conducted in an interspecific P. trichocarpa x P. deltoides pseudo-backcross mapping pedigree and two partially overlapping populations of unrelated P. trichocarpa genotypes using pyrolysis molecular beam mass spectrometry, saccharification, and/ or traditional wet chemistry. QTL mapping was conducted using a high-density genetic map with 3,568 SNP markers. As a fine-mapping approach, chromosome-wide association mapping targeting a QTL hot-spot on linkage group XIV was performed in the two P. trichocarpa populations. Both populations were genotyped using the 34 K Populus Infinium SNP array and whole-genome resequencing of one of the populations facilitated marker-saturation of candidate intervals for gene identification. RESULTS: Five QTLs ranging in size from 0.6 to 1.8 Mb were mapped on linkage group XIV for lignin content, syringyl to guaiacyl (S/G) ratio, 5- and 6-carbon sugars using the mapping pedigree. Six candidate loci exhibiting significant associations with phenotypes were identified within QTL intervals. These associations were reproducible across multiple environments, two independent genotyping platforms, and different plant growth stages. cDNA sequencing for allelic variants of three of the six loci identified polymorphisms leading to variable length poly glutamine (PolyQ) stretch in a transcription factor annotated as an ANGUSTIFOLIA C-terminus Binding Protein (CtBP) and premature stop codons in a KANADI transcription factor as well as a protein kinase. Results from protoplast transient expression assays suggested that each of the polymorphisms conferred allelic differences in the activation of cellulose, hemicelluloses, and lignin pathway marker genes. CONCLUSION: This study illustrates the utility of complementary QTL and association mapping as tools for gene discovery with no a priori candidate gene selection. This proof of concept in a perennial organism opens up opportunities for discovery of novel genetic determinants of economically important but complex traits in plants.


Subject(s)
Cell Wall/genetics , Genes, Plant , Populus/genetics , Alleles , Base Sequence , Cellulose/metabolism , Chromosome Mapping , Genetic Linkage , Genotype , Lignin/biosynthesis , Lod Score , Phenotype , Plant Proteins/chemistry , Plant Proteins/genetics , Polymorphism, Single Nucleotide , Quantitative Trait Loci , Sequence Alignment , Transcription Factors/chemistry , Transcription Factors/genetics
9.
Plant Physiol ; 167(2): 507-16, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25489024

ABSTRACT

Receptor of activated C kinase1 (RACK1) is a versatile scaffold protein that binds to numerous proteins to regulate diverse cellular pathways in mammals. In Arabidopsis (Arabidopsis thaliana), RACK1 has been shown to regulate plant hormone signaling, stress responses, and multiple processes of growth and development. However, little is known about the molecular mechanism underlying these regulations. Here, we show that an atypical serine (Ser)/threonine (Thr) protein kinase, WITH NO LYSINE8 (WNK8), phosphorylates RACK1. WNK8 physically interacted with and phosphorylated RACK1 proteins at two residues: Ser-122 and Thr-162. Genetic epistasis analysis of rack1 wnk8 double mutants indicated that RACK1 acts downstream of WNK8 in the glucose responsiveness and flowering pathways. The phosphorylation-dead form, RACK1A(S122A/T162A), but not the phosphomimetic form, RACK1A(S122D/T162E), rescued the rack1a null mutant, implying that phosphorylation at Ser-122 and Thr-162 negatively regulates RACK1A function. The transcript of RACK1A(S122D/T162E) accumulated at similar levels as those of RACK1(S122A/T162A). However, although the steady-state level of the RACK1A(S122A/T162A) protein was similar to wild-type RACK1A protein, the RACK1A(S122D/T162E) protein was nearly undetectable, suggesting that phosphorylation affects the stability of RACK1A proteins. Taken together, these results suggest that RACK1 is phosphorylated by WNK8 and that phosphorylation negatively regulates RACK1 function by influencing its protein stability.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Protein Serine-Threonine Kinases/metabolism , Receptors, Cell Surface/metabolism , Amino Acid Sequence , Arabidopsis Proteins/chemistry , Genetic Complementation Test , Immunoblotting , Molecular Sequence Data , Mutation/genetics , Phosphorylation , Phosphoserine/metabolism , Protein Binding , Receptors for Activated C Kinase , Receptors, Cell Surface/chemistry
10.
PLoS One ; 9(7): e102757, 2014.
Article in English | MEDLINE | ID: mdl-25036388

ABSTRACT

BACKGROUND: Strigolactones are a new class of plant hormones that play a key role in regulating shoot branching. Studies of branching mutants in Arabidopsis, pea, rice and petunia have identified several key genes involved in strigolactone biosynthesis or signaling pathway. In the model plant Arabidopsis, MORE AXILLARY GROWTH1 (MAX1), MAX2, MAX3 and MAX4 are four founding members of strigolactone pathway genes. However, little is known about the strigolactone pathway genes in the woody perennial plants. METHODOLOGY/PRINCIPAL FINDING: Here we report the identification of MAX homologues in the woody model plant Populus trichocarpa. We identified the sequence homologues for each MAX protein in P. trichocarpa. Gene expression analysis revealed that Populus MAX paralogous genes are differentially expressed across various tissues and organs. Furthermore, we showed that Populus MAX genes could complement or partially complement the shoot branching phenotypes of the corresponding Arabidopsis max mutants. CONCLUSION/SIGNIFICANCE: This study provides genetic evidence that strigolactone pathway genes are likely conserved in the woody perennial plants and lays a foundation for further characterization of strigolactone pathway and its functions in the woody perennial plants.


Subject(s)
Plant Growth Regulators/genetics , Plant Proteins/genetics , Populus/genetics , Signal Transduction/genetics , Gene Expression Regulation, Plant/genetics , Lactones/metabolism , Petunia/genetics , Phenotype , Plant Growth Regulators/metabolism , Plant Shoots/genetics , Plant Shoots/metabolism , Populus/metabolism
11.
J Proteome Res ; 13(3): 1359-72, 2014 Mar 07.
Article in English | MEDLINE | ID: mdl-24559214

ABSTRACT

Strigolactones (SLs) are a new class of plant hormones. In addition to acting as a key inhibitor of shoot branching, SLs stimulate seed germination of root parasitic plants and promote hyphal branching and root colonization of symbiotic arbuscular mycorrhizal fungi. They also regulate many other aspects of plant growth and development. At the transcription level, SL-regulated genes have been reported. However, nothing is known about the proteome regulated by this new class of plant hormones. A quantitative proteomics approach using an isobaric chemical labeling reagent, iTRAQ, to identify the proteome regulated by SLs in Arabidopsis seedlings is presented. It was found that SLs regulate the expression of about three dozen proteins that have not been previously assigned to SL pathways. These findings provide a new tool to investigate the molecular mechanism of action of SLs.


Subject(s)
Arabidopsis Proteins/analysis , Arabidopsis/genetics , Gene Expression Regulation, Plant , Lactones/pharmacology , Plant Growth Regulators/pharmacology , Seedlings/drug effects , Arabidopsis/drug effects , Arabidopsis/growth & development , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Fungi/drug effects , Fungi/physiology , Germination/drug effects , Molecular Sequence Annotation , Mycorrhizae/drug effects , Mycorrhizae/physiology , Proteomics/instrumentation , Proteomics/methods , Seedlings/genetics , Seedlings/growth & development , Seedlings/metabolism , Seeds/drug effects , Seeds/genetics , Seeds/growth & development , Seeds/metabolism , Staining and Labeling
12.
Int J Mol Sci ; 14(4): 7681-701, 2013 Apr 09.
Article in English | MEDLINE | ID: mdl-23612324

ABSTRACT

Phosphorus, acquired in the form of phosphate (Pi), is one of the primary macronutrients for plants but is least available in the soil. Pi deficiency is a major factor limiting plant growth, development and reproduction. Plants have developed a complex signaling network to respond to Pi deficiency. The recent discovery of strigolactones, a new class of plant hormones, has led to an emerging signaling module illustrating the integrated control of Pi acquisition, plant-microbe symbiotic interactions and plant architecture. This review article focuses on the recent findings of plant responses and roles of strigolactones to Pi deficiency.


Subject(s)
Lactones/metabolism , Phosphates/metabolism , Plant Growth Regulators/metabolism , Plants/metabolism , Plant Roots/metabolism , Plant Roots/microbiology , Reproduction/physiology , Symbiosis/physiology
13.
Plant Signal Behav ; 8(2): e23124, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23299429

ABSTRACT

The formation of 5-aminolevulinic acid (ALA) at the beginning of the pathway is the rate limiting step of tetrapyrrole biosynthesis and target of multiple timely and spatially organized control mechanisms. Recent discovery of a glutamyl-tRNA reductase-binding protein (GluTRBP), reveals a new insight in the topology of regulation of plant ALA biosynthesis.


Subject(s)
Aminolevulinic Acid/metabolism , Plant Proteins/metabolism , Gene Expression Regulation, Plant/physiology
14.
Front Plant Sci ; 3: 236, 2012.
Article in English | MEDLINE | ID: mdl-23112801

ABSTRACT

The formation of 5-aminolevulinic acid (ALA) in tetrapyrrole biosynthesis is widely controlled by environmental and metabolic feedback cues that determine the influx into the entire metabolic path. Because of its central role as the rate-limiting step, we hypothesized a potential role of ALA biosynthesis in tetrapyrrole-mediated retrograde signaling and exploited the direct impact of ALA biosynthesis on nuclear gene expression (NGE) by using two different approaches. Firstly, the Arabidopsisgun1, hy1 (gun2), hy2 (gun3), gun4 mutants showing uncoupled NGE from the physiological state of chloroplasts were thoroughly examined for regulatory modifications of ALA synthesis and transcriptional control in the nucleus. We found that reduced ALA-synthesizing capacity is common to analyzed gun mutants. Inhibition of ALA synthesis by gabaculine (GAB) that inactivates glutamate-1-semialdehyde aminotransferase and ALA feeding of wild-type and mutant seedlings corroborate the expression data of gun mutants. Transcript level of photosynthetic marker genes were enhanced in norflurazon (NF)-treated seedlings upon additional GAB treatment, while enhanced ALA amounts diminish these RNA levels in NF-treated wild-type in comparison to the solely NF-treated seedlings. Secondly, the impact of posttranslationally down-regulated ALA synthesis on NGE was investigated by global transcriptome analysis of GAB-treated Arabidopsis seedlings and the gun4-1 mutant, which is also characterized by reduced ALA formation. A common set of significantly modulated genes was identified indicating ALA synthesis as a potential signal emitter. The over-represented gene ontology categories of genes with decreased or increased transcript abundance highlight a few biological processes and cellular functions, which are remarkably affected in response to plastid-localized ALA biosynthesis. These results support the hypothesis that ALA biosynthesis correlates with retrograde signaling-mediated control of NGE.

15.
Plant Physiol ; 160(4): 1923-39, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23085838

ABSTRACT

Low Chlorophyll Accumulation A (LCAA) antisense plants were obtained from a screen for genes whose partial down-regulation results in a strong chlorophyll deficiency in tobacco (Nicotiana tabacum). The LCAA mutants are affected in a plastid-localized protein of unknown function, which is conserved in cyanobacteria and all photosynthetic eukaryotes. They suffer from drastically reduced light-harvesting complex (LHC) contents, while the accumulation of all other photosynthetic complexes per leaf area is less affected. As the disturbed accumulation of LHC proteins could be either attributable to a defect in LHC biogenesis itself or to a bottleneck in chlorophyll biosynthesis, chlorophyll synthesis rates and chlorophyll synthesis intermediates were measured. LCAA antisense plants accumulate magnesium (Mg) protoporphyrin monomethylester and contain reduced protochlorophyllide levels and a reduced content of CHL27, a subunit of the Mg protoporphyrin monomethylester cyclase. Bimolecular fluorescence complementation assays confirm a direct interaction between LCAA and CHL27. 5-Aminolevulinic acid synthesis rates are increased and correlate with an increased content of glutamyl-transfer RNA reductase. We suggest that LCAA encodes an additional subunit of the Mg protoporphyrin monomethylester cyclase, is required for the stability of CHL27, and contributes to feedback-control of 5-aminolevulinic acid biosynthesis, the rate-limiting step of chlorophyll biosynthesis.


Subject(s)
Aminolevulinic Acid/metabolism , Feedback, Physiological , Intramolecular Oxidoreductases/metabolism , Nicotiana/enzymology , Plant Proteins/metabolism , Protoporphyrins/metabolism , Amino Acid Sequence , Chlorophyll/metabolism , Chlorophyll A , Conserved Sequence , Evolution, Molecular , Fluorescence , Gene Expression Regulation, Plant , Intramolecular Oxidoreductases/chemistry , Light-Harvesting Protein Complexes/metabolism , Molecular Sequence Data , Oxidation-Reduction , Phenotype , Photosynthesis/genetics , Plastids/metabolism , Protein Transport , RNA, Antisense/metabolism , Sequence Alignment , Tetrapyrroles/metabolism , Nicotiana/genetics , Nicotiana/growth & development
16.
J Exp Bot ; 63(4): 1675-87, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22231500

ABSTRACT

The tetrapyrrole biosynthetic pathway provides the vital cofactors and pigments for photoautotrophic growth (chlorophyll), several essential redox reactions in electron transport chains (haem), N- and S-assimilation (sirohaem), and photomorphogenic processes (phytochromobilin). While the biochemistry of the pathway is well understood and almost all genes encoding enzymes of tetrapyrrole biosynthesis have been identified in plants, the post-translational control and organization of the pathway remains to be clarified. Post-translational mechanisms controlling metabolic activities are of particular interest since tetrapyrrole biosynthesis needs adaptation to environmental challenges. This review surveys post-translational mechanisms that have been reported to modulate metabolic activities and organization of the tetrapyrrole biosynthesis pathway.


Subject(s)
Cyanobacteria/metabolism , Plants/metabolism , Protein Processing, Post-Translational , Tetrapyrroles/biosynthesis , Chlorophyll/biosynthesis , Chlorophyll/genetics , Signal Transduction
17.
Plant Cell ; 23(12): 4476-91, 2011 Dec.
Article in English | MEDLINE | ID: mdl-22180625

ABSTRACT

5-Aminolevulinic acid (ALA) is the universal precursor for tetrapyrrole biosynthesis and is synthesized in plants in three enzymatic steps: ligation of glutamate (Glu) to tRNA(Glu) by glutamyl-tRNA synthetase, reduction of activated Glu to Glu-1-semialdehyde by glutamyl-tRNA reductase (GluTR), and transamination to ALA by Glu 1-semialdehyde aminotransferase. ALA formation controls the metabolic flow into the tetrapyrrole biosynthetic pathway. GluTR is proposed to be the key regulatory enzyme that is tightly controlled at transcriptional and posttranslational levels. We identified a GluTR binding protein (GluTRBP; previously called PROTON GRADIENT REGULATION7) that is localized in chloroplasts and part of a 300-kD protein complex in the thylakoid membrane. Although the protein does not modulate activity of ALA synthesis, the knockout of GluTRBP is lethal in Arabidopsis thaliana, whereas mutants expressing reduced levels of GluTRBP contain less heme. GluTRBP expression correlates with a function in heme biosynthesis. It is postulated that GluTRBP contributes to subcompartmentalized ALA biosynthesis by maintaining a portion of GluTR at the plastid membrane that funnels ALA into the heme biosynthetic pathway. These results regarding GluTRBP support a model of plant ALA synthesis that is organized in two separate ALA pools in the chloroplast to provide appropriate substrate amounts for balanced synthesis of heme and chlorophyll.


Subject(s)
Aldehyde Oxidoreductases/metabolism , Aminolevulinic Acid/metabolism , Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Chloroplasts/metabolism , Agrobacterium tumefaciens/genetics , Agrobacterium tumefaciens/metabolism , Aldehyde Oxidoreductases/genetics , Amino Acid Sequence , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Carrier Proteins/genetics , Carrier Proteins/metabolism , Chlorophyll/biosynthesis , Chlorophyll/genetics , Chloroplasts/ultrastructure , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression Regulation, Plant , Genes, Plant , Heme/genetics , Heme/metabolism , Molecular Sequence Data , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Plasmids/genetics , Plasmids/metabolism , Protein Interaction Mapping , RNA Interference , RNA, Plant/genetics , RNA, Plant/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Thylakoid Membrane Proteins/genetics , Thylakoid Membrane Proteins/metabolism , Nicotiana/genetics , Nicotiana/metabolism , Transcription, Genetic , Two-Hybrid System Techniques
18.
Methods Mol Biol ; 775: 357-85, 2011.
Article in English | MEDLINE | ID: mdl-21863454

ABSTRACT

Tetrapyrroles and carotenoids are required for many indispensable functions in photosynthesis. Tetrapyrroles are essential metabolites for photosynthesis, redox reaction, and detoxification of reactive oxygen species and xenobiotics, while carotenoids function as accessory pigments, in photoprotection and in attraction to animals. Their branched metabolic pathways of synthesis and degradation are tightly controlled to provide adequate amounts of each metabolite (carotenoids/tetrapyrroles) and to prevent accumulation of photoreactive intermediates (tetrapyrroles). Many Arabidopsis mutants and transgenic plants have been reported to show variations in steady-state levels of tetrapyrrole intermediates and contents of different carotenoid species. It is a challenging task to determine the minute amounts of these metabolites to assess the metabolic flow and the activities of both pigment-synthesising and degrading pathways, to unravel limiting enzymatic steps of these biosynthetic pathways, and to characterise mutants with accumulating intermediates. In this chapter, we present a series of methods to qualify and quantify anabolic and catabolic intermediates of Arabidopsis tetrapyrrole metabolism, and describe a common method for quantification of different plant carotenoid species. Additionally, we introduce two methods for quantification of non-covalently bound haem. The approach of analysing steady-state levels of tetrapyrrole intermediates in plants, when applied in combination with analyses of transcripts, proteins, and enzyme activities, enables the biochemical and genetic elucidation of the tetrapyrrole pathway in wild-type plants, varieties, and mutants. Steady-state levels of tetrapyrrole intermediates are only up to 1/1,000 of the amounts of the accumulating end-products, chlorophyll, and haem. Although present in very low amounts, the accumulation and availability of tetrapyrrole intermediates have major consequences on the physiology and activity of chloroplasts due to their additional photoreactive and possible signalling functions. Although adjusted for Arabidopsis tetrapyrrole metabolites, the presented methods can also be applied for analysis of cyanobacterial and other plant tetrapyrroles.


Subject(s)
Arabidopsis/metabolism , Chemistry Techniques, Analytical/methods , Photosynthesis , Pigments, Biological/biosynthesis , Tetrapyrroles/biosynthesis , Aminolevulinic Acid/analysis , Aminolevulinic Acid/isolation & purification , Aminolevulinic Acid/metabolism , Apoenzymes/metabolism , Calibration , Carotenoids/analysis , Carotenoids/biosynthesis , Carotenoids/isolation & purification , Chlorophyllides/analysis , Chlorophyllides/biosynthesis , Chlorophyllides/isolation & purification , Chromatography, High Pressure Liquid , Chromatography, Ion Exchange , Heme/analysis , Heme/isolation & purification , Horseradish Peroxidase/metabolism , Pigments, Biological/analysis , Pigments, Biological/isolation & purification , Porphobilinogen/analysis , Porphobilinogen/isolation & purification , Porphobilinogen/metabolism , Protochlorophyllide/analysis , Protochlorophyllide/biosynthesis , Protochlorophyllide/isolation & purification , Spectrometry, Fluorescence
19.
Plant Cell Physiol ; 51(5): 670-81, 2010 May.
Article in English | MEDLINE | ID: mdl-20375109

ABSTRACT

In photosynthetic organisms chlorophyll and heme biosynthesis is tightly regulated at various levels in response to environmental adaptation and plant development. The formation of 5-aminolevulinic acid (ALA) is the key regulatory step and provides adequate amounts of the common precursor molecule for the Mg and Fe branches of tetrapyrrole biosynthesis. Pathway control prevents accumulation of metabolic intermediates and avoids photo-oxidative damage. In angiosperms reduction of protochlorophyllide (Pchlide) to chlorophyllide is catalyzed by the light-dependent NADPH:Pchlide oxidoreductase (POR). Although a correlation between down-regulated ALA synthesis and accumulation of Pchlide in the dark was proposed a long time ago, the time-resolved mutual dependency has never been analyzed. Taking advantage of the high metabolic activity of young barley (Hordeum vulgare L.) seedlings, in planta ALA synthesis could be determined with high time-resolution. ALA formation declined immediately after transition from light to dark and correlated with an immediate accumulation of POR-bound Pchlide within the first 60 min in darkness. The flu homologous barley mutant tigrina d(12) uncouples ALA synthesis from dark-suppression and continued to form ALA in darkness without a significant change in synthesis rate in this time interval. Similarly, inhibition of protoporphyrinogen IX oxidase by acifluorfen resulted in a delayed accumulation of Pchlide during the entire dark period and a weak repression of ALA synthesis in darkness. Moreover, it is demonstrated that dark repression of ALA formation relies rather on rapid post-translational regulation in response to accumulating Pchlide than on changes in nuclear gene expression.


Subject(s)
Aminolevulinic Acid/analogs & derivatives , Darkness , Hordeum/metabolism , Protochlorophyllide/biosynthesis , Aminolevulinic Acid/metabolism , Heme/metabolism , Hordeum/genetics , Lipid Peroxidation , Nitrobenzoates , Oxidoreductases Acting on CH-CH Group Donors/metabolism , Photosynthesis , Plant Leaves/metabolism , Protoporphyrinogen Oxidase/metabolism , RNA, Plant/analysis
20.
Plant Mol Biol ; 71(4-5): 425-36, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19680747

ABSTRACT

At the last step of the chlorophyll biosynthetic pathway chlorophyll synthase (CHLG) esterifies chlorophyllide a and b with phytyl or geranyl-geranyl pyrophosphate in chloroplasts. Transgenic tobacco plants expressing CHLG RNA in sense and antisense orientation were examined for the effects of excessive and reduced ectopic CHLG expression, respectively, on the chlorophyll biosynthetic pathway and the expression of chlorophyll-binding proteins. Reduced chlorophyll synthase activity does not result in accumulation of chlorophyllide and caused reduced ALA formation and Mg and ferrochelatase activity, while CHLG overexpression correlated with enhanced ALA synthesizing capacity and more chelatase activities. The transcript levels of genes expressing proteins of chlorophyll biosynthesis and chlorophyll-binding proteins were down-regulated in response to reduced CHLG expression. Thus, reduced expression and activity of chlorophyll synthase caused a feedback-controlled inactivation of the initial and rate limiting step of the pathway leading to down regulation of the metabolic flow, while overexpression can mediate a stimulation of the pathway. Chlorophyll synthase is proposed to be important for the co-regulation of the entire pathway and the coordination of synthesis of chlorophyll and the chlorophyll-binding proteins.


Subject(s)
Carbon-Oxygen Ligases/physiology , Chlorophyll/biosynthesis , Nicotiana/enzymology , Nicotiana/metabolism , Plant Proteins/physiology , Plants, Genetically Modified/enzymology , Plants, Genetically Modified/metabolism , Blotting, Northern , Blotting, Western , Carbon-Oxygen Ligases/genetics , Chromatography, High Pressure Liquid , Heme/metabolism , Plant Proteins/genetics , Plants, Genetically Modified/genetics , RNA, Antisense/genetics , RNA, Antisense/physiology , Tetrapyrroles/biosynthesis , Tetrapyrroles/genetics , Nicotiana/genetics
SELECTION OF CITATIONS
SEARCH DETAIL
...