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1.
Methods Mol Biol ; 2025: 165-190, 2019.
Article in English | MEDLINE | ID: mdl-31267452

ABSTRACT

High-throughput production (HTP) of synthetic genes is becoming an important tool to explore the biological function of the extensive genomic and meta-genomic information currently available from various sources. One such source is animal venom, which contains thousands of novel bioactive peptides with potential uses as novel therapeutics to treat a plethora of diseases as well as in environmentally benign bioinsecticide formulations. Here, we describe a HTP platform for recombinant bacterial production of oxidized disulfide-rich proteins and peptides from animal venoms. High-throughput, host-optimized, gene synthesis and subcloning, combined with robust HTP expression and purification protocols, generate a semiautomated pipeline for the accelerated production of proteins and peptides identified from genomic or transcriptomic libraries. The platform has been applied to the production of thousands of animal venom peptide toxins for the purposes of drug discovery, but has the power to be universally applicable for high-level production of various and diverse target proteins in soluble form. This chapter details the HTP protocol for gene synthesis and production, which supported high levels of peptide expression in the E. coli periplasm using a cleavable DsbC fusion. Finally, target proteins and peptides are purified using automated HTP methods, before undergoing quality control and screening.


Subject(s)
Escherichia coli/metabolism , Animals , Disulfides/metabolism , Escherichia coli/genetics , Polymerase Chain Reaction , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Venoms/metabolism
2.
Microb Cell Fact ; 16(1): 6, 2017 Jan 17.
Article in English | MEDLINE | ID: mdl-28095880

ABSTRACT

BACKGROUND: Animal venoms are complex molecular cocktails containing a wide range of biologically active disulphide-reticulated peptides that target, with high selectivity and efficacy, a variety of membrane receptors. Disulphide-reticulated peptides have evolved to display improved specificity, low immunogenicity and to show much higher resistance to degradation than linear peptides. These properties make venom peptides attractive candidates for drug development. However, recombinant expression of reticulated peptides containing disulphide bonds is challenging, especially when associated with the production of large libraries of bioactive molecules for drug screening. To date, as an alternative to artificial synthetic chemical libraries, no comprehensive recombinant libraries of natural venom peptides are accessible for high-throughput screening to identify novel therapeutics. RESULTS: In the accompanying paper an efficient system for the expression and purification of oxidized disulphide-reticulated venom peptides in Escherichia coli is described. Here we report the development of a high-throughput automated platform, that could be adapted to the production of other families, to generate the largest ever library of recombinant venom peptides. The peptides were produced in the periplasm of E. coli using redox-active DsbC as a fusion tag, thus allowing the efficient formation of correctly folded disulphide bridges. TEV protease was used to remove fusion tags and recover the animal venom peptides in the native state. Globally, within nine months, out of a total of 4992 synthetic genes encoding a representative diversity of venom peptides, a library containing 2736 recombinant disulphide-reticulated peptides was generated. The data revealed that the animal venom peptides produced in the bacterial host were natively folded and, thus, are putatively biologically active. CONCLUSIONS: Overall this study reveals that high-throughput expression of animal venom peptides in E. coli can generate large libraries of recombinant disulphide-reticulated peptides of remarkable interest for drug discovery programs.


Subject(s)
Escherichia coli/genetics , High-Throughput Screening Assays/methods , Peptide Library , Peptides/genetics , Recombinant Proteins/isolation & purification , Venoms/genetics , Animals , Disulfides/chemistry , Drug Discovery/methods , Endopeptidases/metabolism , Escherichia coli Proteins/genetics , Oxidation-Reduction , Peptides/isolation & purification , Peptides/therapeutic use , Periplasm/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/therapeutic use , Venoms/chemistry
3.
Microb Cell Fact ; 16(1): 4, 2017 Jan 17.
Article in English | MEDLINE | ID: mdl-28093085

ABSTRACT

BACKGROUND: Animal venoms are large, complex libraries of bioactive, disulphide-rich peptides. These peptides, and their novel biological activities, are of increasing pharmacological and therapeutic importance. However, recombinant expression of venom peptides in Escherichia coli remains difficult due to the significant number of cysteine residues requiring effective post-translational processing. There is also an urgent need to develop high-throughput recombinant protocols applicable to the production of reticulated peptides to enable efficient screening of their drug potential. Here, a comprehensive study was developed to investigate how synthetic gene design, choice of fusion tag, compartment of expression, tag removal conditions and protease recognition site affect levels of solubility of oxidized venom peptides produced in E. coli. RESULTS: The data revealed that expression of venom peptides imposes significant pressure on cysteine codon selection. DsbC was the best fusion tag for venom peptide expression, in particular when the fusion was directed to the bacterial periplasm. While the redox activity of DsbC was not essential to maximize expression of recombinant fusion proteins, redox activity did lead to higher levels of correctly folded target peptides. With the exception of proline, the canonical TEV protease recognition site tolerated all other residues at its C-terminus, confirming that no non-native residues, which might affect activity, need to be incorporated at the N-terminus of recombinant peptides for tag removal. CONCLUSIONS: This study reveals that E. coli is a convenient heterologous host for the expression of soluble and functional venom peptides. Using the optimal construct design, a large and diverse range of animal venom peptides were produced in the µM scale. These results open up new possibilities for the high-throughput production of recombinant disulphide-rich peptides in E. coli.


Subject(s)
Endopeptidases/metabolism , Escherichia coli/genetics , Peptide Biosynthesis , Peptides/genetics , Venoms/biosynthesis , Venoms/genetics , Animals , Biotechnology/methods , Cloning, Molecular , Disulfides/chemistry , Endopeptidases/chemistry , Genetic Vectors , High-Throughput Screening Assays , Oxidation-Reduction , Peptides/chemistry , Peptides/isolation & purification , Periplasm/chemistry , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/isolation & purification , Solubility , Venoms/chemistry , Venoms/metabolism
4.
Proc Natl Acad Sci U S A ; 113(17): E2460-8, 2016 Apr 26.
Article in English | MEDLINE | ID: mdl-27071086

ABSTRACT

The venom peptide maurocalcin (MCa) is atypical among toxins because of its ability to rapidly translocate into cells and potently activate the intracellular calcium channel type 1 ryanodine receptor (RyR1). Therefore, MCa is potentially subjected to posttranslational modifications within recipient cells. Here, we report that MCa Thr(26) belongs to a consensus PKA phosphorylation site and can be phosphorylated by PKA both in vitro and after cell penetration in cellulo. Unexpectedly, phosphorylation converts MCa from positive to negative RyR1 allosteric modulator. Thr(26) phosphorylation leads to charge neutralization of Arg(24), a residue crucial for MCa agonist activity. The functional effect of Thr(26) phosphorylation is partially mimicked by aspartyl mutation. This represents the first case, to our knowledge, of both ex situ posttranslational modification and pharmacological reprogramming of a small natural cystine-rich peptide by target cells. So far, phosphorylated MCa is the first specific negative allosteric modulator of RyR1, to our knowledge, and represents a lead compound for further development of phosphatase-resistant analogs.


Subject(s)
Scorpion Venoms/metabolism , Calcium/metabolism , Cyclic AMP-Dependent Protein Kinases/metabolism , HEK293 Cells , Homeostasis , Humans , Phosphorylation , Protein Processing, Post-Translational , Ryanodine Receptor Calcium Release Channel/drug effects , Scorpion Venoms/pharmacology
5.
J Immunol Res ; 2015: 423493, 2015.
Article in English | MEDLINE | ID: mdl-26583154

ABSTRACT

Chronic bee paralysis virus (CBPV) causes an infectious and contagious disease of adult honeybees. Its segmented genome is composed of two major positive single-stranded RNAs, RNA 1 (3,674 nt) and RNA 2 (2,305 nt). Three minor RNAs (about 1,000 nt each) have been described earlier but they were not detected by sequencing of CBPV genome. In this study, the results of in vivo inoculation of the two purified CBPV major RNAs are presented and demonstrate that RNA 1 and RNA 2 are infectious. Honeybees inoculated with 10(9) RNA copies per bee developed paralysis symptoms within 6 days after inoculation. The number of CBPV RNA copies increased significantly throughout the infection. Moreover, the negative strand of CBPV RNA was detected by RT-PCR, and CBPV particles were visualized by electronic microscopy in inoculated honeybees. Taken together, these results show that CBPV RNA 1 and CBPV RNA 2 segments can induce virus replication and produce CBPV virus particles. Therefore, the three minor RNAs described in early studies are not essential for virus replication. These data are crucial for the development of a reverse genetic system for CBPV.


Subject(s)
Bees/virology , Genome, Viral , Insect Viruses/genetics , Insect Viruses/pathogenicity , RNA Viruses/genetics , RNA Viruses/pathogenicity , RNA, Viral/genetics , Animals , Insect Viruses/ultrastructure , Phylogeny , RNA, Viral/chemistry , Reverse Genetics , Virus Replication
6.
Cell Rep ; 9(2): 712-27, 2014 Oct 23.
Article in English | MEDLINE | ID: mdl-25310985

ABSTRACT

The appropriate trafficking of glutamate receptors to synapses is crucial for basic synaptic function and synaptic plasticity. It is now accepted that NMDA receptors (NMDARs) internalize and are recycled at the plasma membrane but also exchange between synaptic and extrasynaptic pools; these NMDAR properties are also key to governing synaptic plasticity. Scribble1 is a large PDZ protein required for synaptogenesis and synaptic plasticity. Herein, we show that the level of Scribble1 is regulated in an activity-dependent manner and that Scribble1 controls the number of NMDARs at the plasma membrane. Notably, Scribble1 prevents GluN2A subunits from undergoing lysosomal trafficking and degradation by increasing their recycling to the plasma membrane following NMDAR activation. Finally, we show that a specific YxxR motif on Scribble1 controls these mechanisms through a direct interaction with AP2. Altogether, our findings define a molecular mechanism to control the levels of synaptic NMDARs via Scribble1 complex signaling.


Subject(s)
Adaptor Protein Complex 2/metabolism , Endosomes/metabolism , Receptors, N-Methyl-D-Aspartate/metabolism , Tumor Suppressor Proteins/metabolism , Amino Acid Motifs , Amino Acid Sequence , Animals , Binding Sites , Cells, Cultured , Molecular Sequence Data , Neurons/metabolism , Protein Binding , Protein Transport , Proteolysis , Rats , Rats, Sprague-Dawley , Tumor Suppressor Proteins/chemistry
7.
J Biol Chem ; 286(15): 13583-602, 2011 Apr 15.
Article in English | MEDLINE | ID: mdl-21317293

ABSTRACT

The Henipavirus genome is encapsidated by the nucleoprotein (N) within a helical nucleocapsid that recruits the polymerase complex via the phosphoprotein (P). In a previous study, we reported that in henipaviruses, the N-terminal domain of the phosphoprotein and the C-terminal domain of the nucleoprotein (N(TAIL)) are both intrinsically disordered. Here we show that Henipavirus N(TAIL) domains are also disordered in the context of full-length nucleoproteins. We also report the cloning, purification, and characterization of the C-terminal X domains (P(XD)) of Henipavirus phosphoproteins. Using isothermal titration calorimetry, we show that N(TAIL) and P(XD) form a 1:1 stoichiometric complex that is stable under NaCl concentrations as high as 1 M and has a K(D) in the µM range. Using far-UV circular dichroism and nuclear magnetic resonance, we show that P(XD) triggers an increase in the α-helical content of N(TAIL). Using fluorescence spectroscopy, we show that P(XD) has no impact on the chemical environment of a Trp residue introduced at position 527 of the Henipavirus N(TAIL) domain, thus arguing for the lack of stable contacts between the C termini of N(TAIL) and P(XD). Finally, we present a tentative structural model of the N(TAIL)-P(XD) interaction in which a short, order-prone region of N(TAIL) (α-MoRE; amino acids 473-493) adopts an α-helical conformation and is embedded between helices α2 and α3 of P(XD), leading to a relatively small interface dominated by hydrophobic contacts. The present results provide the first detailed experimental characterization of the N-P interaction in henipaviruses and designate the N(TAIL)-P(XD) interaction as a valuable target for rational antiviral approaches.


Subject(s)
Henipavirus/chemistry , Models, Molecular , Nucleoproteins/chemistry , Phosphoproteins/chemistry , Viral Proteins/chemistry , Henipavirus/genetics , Nucleoproteins/genetics , Phosphoproteins/genetics , Protein Structure, Quaternary , Protein Structure, Secondary , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Viral Proteins/genetics
8.
PLoS One ; 5(7): e11684, 2010 Jul 21.
Article in English | MEDLINE | ID: mdl-20657787

ABSTRACT

Henipaviruses are newly emerged viruses within the Paramyxoviridae family. Their negative-strand RNA genome is packaged by the nucleoprotein (N) within alpha-helical nucleocapsid that recruits the polymerase complex made of the L protein and the phosphoprotein (P). To date structural data on Henipaviruses are scarce, and their N and P proteins have never been characterized so far. Using both computational and experimental approaches we herein show that Henipaviruses N and P proteins possess large intrinsically disordered regions. By combining several disorder prediction methods, we show that the N-terminal domain of P (PNT) and the C-terminal domain of N (NTAIL) are both mostly disordered, although they contain short order-prone segments. We then report the cloning, the bacterial expression, purification and characterization of Henipavirus PNT and NTAIL domains. By combining gel filtration, dynamic light scattering, circular dichroism and nuclear magnetic resonance, we show that both NTAIL and PNT belong to the premolten globule sub-family within the class of intrinsically disordered proteins. This study is the first reported experimental characterization of Henipavirus P and N proteins. The evidence that their respective N-terminal and C-terminal domains are highly disordered under native conditions is expected to be invaluable for future structural studies by helping to delineate N and P protein domains amenable to crystallization. In addition, following previous hints establishing a relationship between structural disorder and protein interactivity, the present results suggest that Henipavirus PNT and NTAIL domains could be involved in manifold protein-protein interactions.


Subject(s)
Henipavirus/metabolism , Nucleocapsid Proteins/chemistry , Nucleocapsid Proteins/metabolism , Phosphoproteins/chemistry , Phosphoproteins/metabolism , Viral Proteins/chemistry , Viral Proteins/metabolism , Chromatography, Gel , Circular Dichroism , Henipavirus/genetics , Magnetic Resonance Spectroscopy , Nucleocapsid Proteins/genetics , Phosphoproteins/genetics , Viral Proteins/genetics
9.
J Biol Chem ; 285(44): 34168-80, 2010 Oct 29.
Article in English | MEDLINE | ID: mdl-20610396

ABSTRACT

Maurocalcine has been the first demonstrated animal toxin acting as a cell-penetrating peptide. Although it possesses competitive advantages, its use as a cell-penetrating peptide (CPP) requires that analogues be developed that lack its characteristic pharmacological activity on ryanodine-sensitive calcium channels without affecting its cell-penetrating and vector efficiencies. Here, we present the synthesis, three-dimensional (1)H NMR structure, and activity of D-maurocalcine. We demonstrate that it possesses all of the desired features for an excellent CPP: preserved structure, lack of pharmacological action, conserved vector properties, and absence of cell toxicity. This is the first report of a folded/oxidized animal toxin in its D-diastereomer conformation for use as a CPP. The protease resistance of this new peptide analogue, combined with its efficient cell penetration at concentrations devoid of cell toxicity, suggests that D-maurocalcine should be an excellent vector for in vivo applications.


Subject(s)
Peptides/chemistry , Scorpion Venoms/chemistry , Animals , CHO Cells , Calcium Channels/chemistry , Cell Membrane/metabolism , Circular Dichroism , Cricetinae , Cricetulus , Fluoresceins/chemistry , Magnetic Resonance Spectroscopy/methods , Microscopy, Confocal/methods , Peptide Hydrolases/chemistry , Ryanodine/chemistry , Scorpion Venoms/pharmacology , Tetrazolium Salts/pharmacology , Thiazoles/pharmacology
10.
J Mol Recognit ; 23(5): 435-47, 2010.
Article in English | MEDLINE | ID: mdl-20058326

ABSTRACT

In this report, the solution structure of the nucleocapsid-binding domain of the measles virus phosphoprotein (XD, aa 459-507) is described. A dynamic description of the interaction between XD and the disordered C-terminal domain of the nucleocapsid protein, (N(TAIL), aa 401-525), is also presented. XD is an all alpha protein consisting of a three-helix bundle with an up-down-up arrangement of the helices. The solution structure of XD is very similar to the crystal structures of both the free and bound form of XD. One exception is the presence of a highly dynamic loop encompassing XD residues 489-491, which is involved in the embedding of the alpha-helical XD-binding region of N(TAIL). Secondary chemical shift values for full-length N(TAIL) were used to define the precise boundaries of a transient helical segment that coincides with the XD-binding domain, thus shedding light on the pre-recognition state of N(TAIL). Titration experiments with unlabeled XD showed that the transient alpha-helical conformation of N(TAIL) is stabilized upon binding. Lineshape analysis of NMR resonances revealed that residues 483-506 of N(TAIL) are in intermediate exchange with XD, while the 475-482 and 507-525 regions are in fast exchange. The N(TAIL) resonance behavior in the titration experiments is consistent with a complex binding model with more than two states.


Subject(s)
Measles virus/chemistry , Nucleoproteins/chemistry , Phosphoproteins/chemistry , Protein Structure, Secondary , Protein Structure, Tertiary , Crystallography, X-Ray , Models, Molecular , Molecular Sequence Data , Nucleoproteins/metabolism , Phosphoproteins/metabolism , Solutions
11.
J Struct Biol ; 169(1): 75-80, 2010 Jan.
Article in English | MEDLINE | ID: mdl-19747550

ABSTRACT

The bacterial type II protein secretion (T2S) and type IV piliation (T4P) systems share several common features. In particular, it is well established that the T2S system requires the function of a pilus-like structure, called pseudopilus, which is built upon assembly of pilin-like subunits, called pseudopilins. Pilins and pseudopilins have a hydrophobic N-terminal region, which precedes an extended hydrophilic C-terminal region. In the case of pilins, it was shown that oligomerisation and formation of helical fibers, takes place through interaction between the hydrophobic domains. XcpT, is the most abundant protein of the Pseudomonas aeruginosa T2S, and was proposed to be the main component in the pseudopilus. In this study we present the high-resolution NMR structure of the hydrophilic domain of XcpT (XcpTp). XcpTp is lacking the C-terminal disulfide bridged "D" domain found in type IV pilins and likely involved in receptor binding. This is in agreement with the idea that the XcpT-containing pseudopilus is required for protein secretion and not for bacterial attachment. Interestingly, by solving the 3D structure of XcpTp we revealed that the previously called alphabeta-loop pilin region is in fact highly conserved among major type II pseudopilins and constitutes a specific consensus motif for identifying major pseudopilins, which belong to this family.


Subject(s)
Bacterial Proteins/metabolism , Membrane Transport Proteins/chemistry , Membrane Transport Proteins/metabolism , Pseudomonas aeruginosa/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Protein Structure, Secondary , Sequence Homology, Amino Acid , Structural Homology, Protein
12.
Eur J Mass Spectrom (Chichester) ; 15(4): 517-29, 2009.
Article in English | MEDLINE | ID: mdl-19661560

ABSTRACT

Psalmopeotoxin I (PcFK1) is a 33-residue peptide isolated from the venom of the tarantula Psalmopoeus cambridgei. This peptide specifically inhibits the intra-erythrocyte stage of Plasmodium falciparum in vitro. It contains six cysteine residues forming three disulfide bridges and belongs to the superfamily of natural peptides containing the inhibitor cystine knot (ICK) fold. We produced the wild-type and mutated forms of the recombinant peptide to examine the mechanism of action of PcFK1. The purified toxins were consistently produced as two isobaric peptides (r-PcFK1-1 and r-PcFK1-2) with different retention properties but identical anti-plasmodial -biological activity. Comparison of (15)N-NMR heteronuclear single quantum correlation spectra revealed that although rPcFK1-1 was highly structured, rPcFK1-2 does not have a stable three-dimensional structure. We used high-energy collision-induced fragmentation of the peptides with a matrix-assisted laser desorption/ionization tandem time-of- flight mass spectrometer to further investigate the structure of the native peptides in its natural form and produced in E. coli. The fragmentation spectra of the native peptides were very complex due to the occurrence in the spectrum of ions resulting from (1) cross-linking of fragments through a disulfide bridge and (2) asymmetric fragmentations of the disulfide bridges and (3) multiple neutral losses. The tandem mass spectrometry fragmentation pattern of r-PcFK1-1 was similar to that of the natural peptide isolated from crude venom, but r-PcFK1-2 had a clearly distinct fragmentation pattern, more closely resembling the fragmentation spectra of reduced and alkylated peptides. Observed ions could be attributed to specific fragments by comparing spectra between the wild-type and selected variants with point mutations (Y11W, R20T, Y26W, K28V). The disulfide connections in r-PcFK1-2 differed from those of the native peptide and showed a rare disulfide bridge between vicinal cysteine residues. The r-PcFK1_(R20T) variant showed a very limited fragmentation pattern when analyzed in positive mode but displayed much more fragmentation in negative mode pointing out the importance of the R20 residue in the fragmentation of PcFK1. Using the reductive matrix 1,5-diaminonaphtalene promoted strongly in source decay fragmentation of the peptides in MS mode. Our findings illustrated the critical role of the electronic environment around the central Cys(18)-Cys(19) doublet in PcFK1 in internal fragmentation of the peptide.


Subject(s)
Antimalarials/analysis , Arachnida/chemistry , Disulfides/analysis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Spider Venoms/analysis , Spider Venoms/genetics , Amino Acid Sequence , Animals , Antimalarials/isolation & purification , Cysteine/analysis , Escherichia coli/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Plasmodium falciparum/drug effects , Spider Venoms/isolation & purification , Tandem Mass Spectrometry/methods
13.
Virol J ; 6: 59, 2009 May 15.
Article in English | MEDLINE | ID: mdl-19445677

ABSTRACT

BACKGROUND: The genome of measles virus consists of a non-segmented single-stranded RNA molecule of negative polarity, which is encapsidated by the viral nucleoprotein (N) within a helical nucleocapsid. The N protein possesses an intrinsically disordered C-terminal domain (aa 401-525, N(TAIL)) that is exposed at the surface of the viral nucleopcapsid. Thanks to its flexible nature, N(TAIL) interacts with several viral and cellular partners. Among these latter, the Interferon Regulator Factor 3 (IRF-3) has been reported to interact with N, with the interaction having been mapped to the regulatory domain of IRF-3 and to N(TAIL). This interaction was described to lead to the phosphorylation-dependent activation of IRF-3, and to the ensuing activation of the pro-immune cytokine RANTES gene. RESULTS: After confirming the reciprocal ability of IRF-3 and N to be co-immunoprecipitated in 293T cells, we thoroughly investigated the N(TAIL)-IRF-3 interaction using a recombinant, monomeric form of the regulatory domain of IRF-3. Using a large panel of spectroscopic approaches, including circular dichroism, fluorescence spectroscopy, nuclear magnetic resonance and electron paramagnetic resonance spectroscopy, we failed to detect any direct interaction between IRF-3 and either full-length N or NTAIL under conditions where these latter interact with the C-terminal X domain of the viral phosphoprotein. Furthermore, such interaction was neither detected in E. coli nor in a yeast two hybrid assay. CONCLUSION: Altogether, these data support the requirement for a specific cellular environment, such as that provided by 293T human cells, for the N(TAIL)-IRF-3 interaction to occur. This dependence from a specific cellular context likely reflects the requirement for a human or mammalian cellular co-factor.


Subject(s)
Interferon Regulatory Factor-3/metabolism , Measles virus/metabolism , Measles/metabolism , Nucleoproteins/metabolism , Viral Proteins/metabolism , Amino Acid Motifs , Amino Acid Sequence , Binding Sites , Cell Line , Humans , Interferon Regulatory Factor-3/chemistry , Interferon Regulatory Factor-3/genetics , Measles/genetics , Measles/virology , Measles virus/chemistry , Measles virus/genetics , Molecular Sequence Data , Nucleocapsid Proteins , Nucleoproteins/chemistry , Nucleoproteins/genetics , Protein Binding , Protein Structure, Tertiary , Two-Hybrid System Techniques , Viral Proteins/chemistry , Viral Proteins/genetics
14.
Biochim Biophys Acta ; 1794(8): 1190-6, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19374957

ABSTRACT

Soluble venom and purified fractions of the theraposid spider Brachypelma albiceps were screened for insecticidal peptides based on toxicity to crickets. Two insecticidal peptides, named Ba1 and Ba2, were obtained after the soluble venom was separated by high performance liquid chromatography and cation exchange chromatography. The two insecticidal peptides contain 39 amino acid residues and three disulfide bonds, and based on their amino acid sequence, they are highly identical to the insecticidal peptides from the theraposid spiders Aphonopelma sp. from the USA and Haplopelma huwenum from China indicating a relationship among these genera. Although Ba1 and Ba2 were not able to modify currents in insect and vertebrate cloned voltage-gated sodium ion channels, they have noteworthy insecticidal activities compared to classical arachnid insecticidal toxins indicating that they might target unknown receptors in insect species. The most abundant insecticidal peptide Ba2 was submitted to NMR spectroscopy to determine its 3-D structure; a remarkable characteristic of Ba2 is a cluster of basic residues, which might be important for receptor recognition.


Subject(s)
Spider Venoms/chemistry , Amino Acid Sequence , Animals , Gryllidae , Insecticides/chemistry , Insecticides/toxicity , Male , Mice , Models, Molecular , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Peptides/chemistry , Peptides/toxicity , Sodium Channels/drug effects , Spider Venoms/toxicity , Spiders/chemistry , Xenopus laevis
15.
FEBS Lett ; 583(7): 1084-9, 2009 Apr 02.
Article in English | MEDLINE | ID: mdl-19275899

ABSTRACT

In this paper we investigate the interaction between the C-terminal domains of the measles virus phosphoprotein (XD) and nucleoprotein (N(TAIL)) by using nuclear magnetic resonance chemical shift perturbation experiments. Using both N(TAIL) constructs and peptides, we show that contrary to the conserved Box2 region (N(489-506)), the C-terminal region of N(TAIL) (N(513-525)) does not directly interact with XD, and yet affects binding to XD. We tentatively propose a model where the C-terminus of N(TAIL) would stabilize the N(TAIL)-XD complex either via a functional coupling with N(489-506) or by reducing the entropic penalty associated to the binding-coupled-to-folding process.


Subject(s)
Measles virus/chemistry , Models, Molecular , Nucleocapsid Proteins/chemistry , Phosphoproteins/chemistry , Protein Folding , Viral Proteins/chemistry , Measles virus/metabolism , Nuclear Magnetic Resonance, Biomolecular , Nucleocapsid Proteins/metabolism , Phosphoproteins/metabolism , Protein Structure, Tertiary/physiology , Viral Proteins/metabolism
16.
J Biol Chem ; 283(40): 27048-56, 2008 Oct 03.
Article in English | MEDLINE | ID: mdl-18621738

ABSTRACT

Maurocalcine is a 33-mer peptide initially isolated from the venom of a Tunisian scorpion. It has proved itself valuable as a pharmacological activator of the ryanodine receptor and has helped the understanding of the molecular basis underlying excitation-contraction coupling in skeletal muscles. Because of its positively charged nature, it is also an innovative vector for the cell penetration of various compounds. We report a novel maurocalcine analog with improved properties: (i) the complete loss of pharmacological activity, (ii) preservation of the potent ability to carry cargo molecules into cells, and (iii) coupling chemistries not affected by the presence of internal cysteine residues of maurocalcine. We did this by replacing the six internal cysteine residues of maurocalcine by isosteric 2-aminobutyric acid residues and by adding an additional N-terminal biotinylated lysine (for a proof of concept analog) or an N-terminal cysteine residue (for a chemically competent coupling analogue). Additional replacement of a glutamate residue by alanyl at position 12 further improves the potency of these analogues. Coupling to several cargo molecules or nanoparticles are presented to illustrate the cell penetration potency and usefulness of these pharmacologically inactive analogs.


Subject(s)
Drug Carriers/pharmacology , Scorpion Venoms/pharmacology , Animals , CHO Cells , Cricetinae , Cricetulus , Disulfides/chemistry , Drug Carriers/chemical synthesis , Drug Carriers/chemistry , Humans , Mice , Muscle, Skeletal/cytology , Muscle, Skeletal/metabolism , Scorpion Venoms/chemical synthesis , Scorpion Venoms/genetics , Scorpions/genetics , Scorpions/metabolism
17.
J Antibiot (Tokyo) ; 61(2): 89-93, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18408329

ABSTRACT

Bacteriocin J46 is a 27-residue polypeptide produced by Lactococcus lactis subsp. cremoris J46 in fermented milk. The natural form of J46 (nJ46) exhibits a broad antimicrobial spectrum. Herein, we produced the synthetic form of J46 (sJ46) by solid-phase chemical synthesis. The biochemical and physico-chemical properties of sJ46, as well as its antimicrobial activity, were found to be identical to those of its natural counterpart nJ46. It showed a potent antimicrobial activity against both lactic acid bacteria and other Gram-positive microorganisms. (1)H-NMR conformational analysis of sJ46 indicates that it adopts a flexible random coil structure.


Subject(s)
Anti-Bacterial Agents/chemical synthesis , Bacteriocins/chemical synthesis , Lactococcus lactis/chemistry , Animals , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Bacteriocins/chemistry , Bacteriocins/pharmacology , Microbial Sensitivity Tests , Milk/microbiology , Molecular Conformation
18.
Protein Sci ; 17(1): 107-18, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18042681

ABSTRACT

Agitoxin 2 (AgTx2) is a 38-residue scorpion toxin, cross-linked by three disulfide bridges, which acts on voltage-gated K(+) (Kv) channels. Maurotoxin (MTX) is a 34-residue scorpion toxin with an uncommon four-disulfide bridge reticulation, acting on both Ca(2+)-activated and Kv channels. A 39-mer chimeric peptide, named AgTx2-MTX, was designed from the sequence of the two toxins and chemically synthesized. It encompasses residues 1-5 of AgTx2, followed by the complete sequence of MTX. As established by enzyme cleavage, the new AgTx2-MTX molecule displays half-cystine pairings of the type C1-C5, C2-C6, C3-C7, and C4-C8, which is different from that of MTX. The 3D structure of AgTx2-MTX solved by (1)H-NMR, revealed both alpha-helical and beta-sheet structures, consistent with a common alpha/beta scaffold of scorpion toxins. Pharmacological assays of AgTx2-MTX revealed that this new molecule is more potent than both original toxins in blocking rat Kv1.2 channel. Docking simulations, performed with the 3D structure of AgTx2-MTX, confirmed this result and demonstrated the participation of the N-terminal domain of AgTx2 in its increased affinity for Kv1.2 through additional molecular contacts. Altogether, the data indicated that replacement of the N-terminal domain of MTX by the one of AgTx2 in the AgTx2-MTX chimera results in a reorganization of the disulfide bridge arrangement and an increase of affinity to the Kv1.2 channel.


Subject(s)
Crotalid Venoms/chemistry , Crotalid Venoms/chemical synthesis , Kv1.2 Potassium Channel/antagonists & inhibitors , Scorpion Venoms/chemistry , Scorpion Venoms/chemical synthesis , Amino Acid Sequence , Binding Sites , Cell Line , Crotalid Venoms/pharmacology , Humans , Kinetics , Magnetic Resonance Spectroscopy/methods , Models, Molecular , Molecular Sequence Data , Protein Conformation , Recombinant Proteins/antagonists & inhibitors , Scorpion Venoms/pharmacology , Transfection
19.
Biochim Biophys Acta ; 1768(10): 2528-40, 2007 Oct.
Article in English | MEDLINE | ID: mdl-17888395

ABSTRACT

Maurocalcine (MCa) is a 33-amino acid residue peptide that was initially identified in the Tunisian scorpion Scorpio maurus palmatus. This peptide triggers interest for three main reasons. First, it helps unravelling the mechanistic basis of Ca(2+) mobilization from the sarcoplasmic reticulum because of its sequence homology with a calcium channel domain involved in excitation-contraction coupling. Second, it shows potent pharmacological properties because of its ability to activate the ryanodine receptor. Finally, it is of technological value because of its ability to carry cell-impermeable compounds across the plasma membrane. Herein, we characterized the molecular determinants that underlie the pharmacological and cell-penetrating properties of maurocalcine. We identify several key amino acid residues of the peptide that will help the design of cell-penetrating analogues devoid of pharmacological activity and cell toxicity. Close examination of the determinants underlying cell penetration of maurocalcine reveals that basic amino acid residues are required for an interaction with negatively charged lipids of the plasma membrane. Maurocalcine analogues that penetrate better have also stronger interaction with negatively charged lipids. Conversely, less effective analogues present a diminished ability to interact with these lipids. These findings will also help the design of still more potent cell penetrating analogues of maurocalcine.


Subject(s)
Cell Survival/drug effects , Membrane Lipids/chemistry , Scorpion Venoms/pharmacology , Amino Acid Sequence , Animals , CHO Cells , Cricetinae , Cricetulus , Molecular Sequence Data , Ryanodine/metabolism , Scorpion Venoms/chemistry , Structure-Activity Relationship
20.
Protein Sci ; 15(3): 628-34, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16452619

ABSTRACT

Psalmopeotoxin I (PcFK1) is a 33-amino-acid residue peptide isolated from the venom of the tarantula Psalmopoeus cambridgei. It has been recently shown to possess strong antiplasmodial activity against the intra-erythrocyte stage of Plasmodium falciparum in vitro. Although the molecular target for PcFK1 is not yet determined, this peptide does not lyse erythrocytes, is not cytotoxic to nucleated mammalian cells, and does not inhibit neuromuscular function. We investigated the structural properties of PcFK1 to help understand the unique mechanism of action of this peptide and to enhance its utility as a lead compound for rational development of new antimalarial drugs. In this paper, we have determined the three-dimensional solution structure by (1)H two-dimensional NMR means of recombinant PcFK1, which is shown to belong to the ICK structural superfamily with structural determinants common to several neurotoxins acting as ion channels effectors.


Subject(s)
Antimalarials/chemistry , Models, Molecular , Spider Venoms/chemistry , Animals , Nuclear Magnetic Resonance, Biomolecular , Peptides/chemistry , Plasmodium falciparum/drug effects , Solutions
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