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1.
Semin Immunopathol ; 43(4): 519-533, 2021 08.
Article in English | MEDLINE | ID: mdl-34230995

ABSTRACT

The liver is an important immunological site that can promote immune tolerance or activation. Natural killer (NK) cells are a major immune subset within the liver, and therefore understanding their role in liver homeostasis and inflammation is crucial. Due to their cytotoxic function, NK cells are important in the immune response against hepatotropic viral infections but are also involved in the inflammatory processes of autoimmune liver diseases and fatty liver disease. Whether NK cells primarily promote pro-inflammatory or tolerogenic responses is not known for many liver diseases. Understanding the involvement of NK cells in liver inflammation will be crucial in effective treatment and future immunotherapeutic targeting of NK cells in these disease settings. Here, we explore the role that NK cells play in inflammation of the liver in the context of viral infection, autoimmunity and fatty liver disease.


Subject(s)
Autoimmune Diseases , Liver Diseases , Humans , Inflammation , Killer Cells, Natural , Liver
2.
Gene Ther ; 19(10): 999-1009, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22071974

ABSTRACT

We report on the long-term safety of AAV2.sFlt-1 (a recombinant adeno-associated virus serotype 2 carrying the soluble form of the Flt-1 receptor) injection into the subretinal space of non-human primates. Levels of sFlt-1 protein were significantly higher (P<0.05) in the vitreous of four out of five AAV2.sFlt-1-injected eyes. There was no evidence of damage to the eyes of animals that received subretinal injections of AAV2.sFlt-1; ocular examination showed no anterior chamber flare, normal fundus and electroretinography responses equivalent to those observed before treatment. Notably, immunological analysis demonstrated that gene therapy involving subretinal injection of AAV2.sFlt-1 does not elicit cell-mediated immunity. Biodistribution analysis showed that AAV2.sFlt-1 could be detected only in the eye and not in the other organs tested. These data indicate that gene therapy with subretinal AAV2.sFlt-1 is safe and well tolerated, and therefore promising for the long-term treatment of neovascular diseases of the eye.


Subject(s)
Dependovirus/genetics , Genetic Therapy , Retinal Neovascularization/therapy , Vascular Endothelial Growth Factor Receptor-1/genetics , Animals , Genetic Therapy/adverse effects , Genetic Vectors , Macaca fascicularis , Retina/immunology , Retina/metabolism , Retinal Neovascularization/genetics , Retinal Neovascularization/immunology , Vascular Endothelial Growth Factor Receptor-1/immunology , Vascular Endothelial Growth Factor Receptor-1/metabolism
3.
Cell Death Differ ; 16(2): 312-20, 2009 Feb.
Article in English | MEDLINE | ID: mdl-18949000

ABSTRACT

The evolutionary survival of viruses relies on their ability to disseminate infectious progeny to sites of transmission. The capacity to subvert apoptosis is thought to be crucial for ensuring efficient viral replication in permissive cells, but its role in viral dissemination in vivo has not been considered. We show here that the murine cytomegalovirus (MCMV) m38.5 protein specifically counters the action of Bax. As predicted from our biochemical data, the capacity of m38.5 to inhibit apoptosis is only apparent in cells unable to activate Bak. Deletion of m38.5 resulted in an attenuated growth of MCMV in vitro. In vivo replication of the Deltam38.5 virus was not significantly impaired in visceral organs. However, m38.5 played a central role in protecting leukocytes from Bax-mediated apoptosis, thereby promoting viral dissemination to the salivary glands, the principal site of transmission. These results establish that in vivo MCMV replication induces the activation of Bax in leukocytes, but not other permissive cells, and that MCMV interferes with this process to attain maximum dissemination.


Subject(s)
Leukocytes/virology , Muromegalovirus/physiology , Viral Proteins/metabolism , bcl-2-Associated X Protein/antagonists & inhibitors , Animals , Apoptosis , COS Cells , Chlorocebus aethiops , Mice , Muromegalovirus/genetics , Salivary Glands/virology , Viral Proteins/genetics , bcl-2 Homologous Antagonist-Killer Protein/metabolism , bcl-2-Associated X Protein/metabolism
4.
Curr Top Microbiol Immunol ; 269: 131-51, 2002.
Article in English | MEDLINE | ID: mdl-12224506

ABSTRACT

Homologues of MHC class I proteins have been identified in the genomes of human, murine and rat cytomegaloviruses (CMVs). Given the pivotal role of the MHC class I protein in cellular immunity, it has been postulated that the viral homologues subvert the normal antiviral immune response of the host, thus promoting virus replication and dissemination in an otherwise hostile environment. This review focuses on recent studies of the CMV MHC class I homologues at the molecular, cellular and whole animal level and presents current hypotheses for their roles in the CMV life cycle.


Subject(s)
Caenorhabditis elegans Proteins , Cytomegalovirus Infections/immunology , Cytomegalovirus/immunology , Histocompatibility Antigens Class I/immunology , Nuclear Proteins , Transcription Factors , Animals , Carrier Proteins/metabolism , Down-Regulation , Humans , Immunity, Cellular , Killer Cells, Natural/immunology , Receptors, Virus/metabolism , T-Lymphocytes, Cytotoxic/immunology , Virus Replication
5.
Nat Immunol ; 2(11): 1077-84, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11668340

ABSTRACT

Cytomegalovirus (CMV), measles and HIV are the main human pathogens known to induce immunosuppression. Unlike measles and HIV, and despite the availability of a well studied animal model, little is known about the mechanisms that control CMV-induced immunosuppression. We hypothesized that dendritic cells (DCs), which are crucial in generating and maintaining immune responses, represent a target for CMV and that the transient, but profound, immunosuppression that accompanies CMV infection results from viral interference with DC functions. Here we show that DCs were permissive to murine CMV infection. In addition, DC infection prevented delivery of the signals required for T cell activation. Thus, CMV-mediated impairment of DC function may be crucial for virally induced immunosuppression and interleukin 2 is implicated as a key factor.


Subject(s)
Cytomegalovirus Infections/immunology , Cytomegalovirus/pathogenicity , Dendritic Cells/virology , Immune Tolerance , Immunologic Deficiency Syndromes/etiology , Animals , Cytomegalovirus/physiology , Cytomegalovirus Infections/complications , Cytomegalovirus Infections/virology , Dendritic Cells/drug effects , Dendritic Cells/immunology , Endocytosis , Genes, Reporter , Immunocompromised Host , Immunologic Deficiency Syndromes/immunology , Lac Operon , Lipopolysaccharides/pharmacology , Lymphocyte Activation , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Specific Pathogen-Free Organisms , T-Lymphocyte Subsets/immunology , Virus Replication , beta-Galactosidase/analysis , beta-Galactosidase/biosynthesis
6.
J Immunol ; 166(3): 1796-802, 2001 Feb 01.
Article in English | MEDLINE | ID: mdl-11160226

ABSTRACT

NK cells mediate early host defense against viral infection. In murine CMV (MCMV) infection NK cells play a critical role in controlling viral replication in target organs, such as spleen and liver. Until now it has not been possible to directly examine the role of NK cells in MCMV-induced inflammation in situ due to the inability to stain specifically for NK cells in infected tissues. In this study, we describe a method of in vivo fixation, resulting in the first identification of NK cells in situ using NK1.1 as the marker. Using this method, we characterize the NK1.1(+) cellular component of the inflammatory response to wild-type MCMV in the spleen, liver, and lung of genetically susceptible and resistant mice following i.p. infection. This study provides the first in situ description of the cellular response mediated specifically by NK cells following MCMV infection.


Subject(s)
Antigens/biosynthesis , Herpesviridae Infections/immunology , Killer Cells, Natural/immunology , Killer Cells, Natural/virology , Muromegalovirus/immunology , Protein Biosynthesis , Animals , Antigens/analysis , Antigens, Ly , Antigens, Surface , Biomarkers/analysis , Fluorescent Antibody Technique, Indirect , Herpesviridae Infections/metabolism , Herpesviridae Infections/pathology , Killer Cells, Natural/chemistry , Lectins, C-Type , Liver/chemistry , Liver/immunology , Liver/pathology , Liver/virology , Lung/chemistry , Lung/immunology , Lung/pathology , Lung/virology , Mice , Mice, Congenic , Mice, Inbred BALB C , Mice, Inbred C57BL , NK Cell Lectin-Like Receptor Subfamily B , Proteins/analysis , Spleen/chemistry , Spleen/immunology , Spleen/pathology , Spleen/virology , Viral Plaque Assay
7.
J Exp Med ; 190(3): 435-44, 1999 Aug 02.
Article in English | MEDLINE | ID: mdl-10430631

ABSTRACT

Until now, it has been unclear whether murine cytomegalovirus (MCMV)-encoded protein m144 directly regulates natural killer (NK) cell effector function and whether the effects of m144 are only strictly evident in the context of MCMV infection. We have generated clones of the transporter associated with antigen processing (TAP)-2-deficient RMA-S T lymphoma cell line and its parent cell line, RMA, that stably express significant and equivalent levels of m144. In vivo NK cell-mediated rejection of RMA-S-m144 lymphomas was reduced compared with rejection of parental or mock-transfected RMA-S clones, indicating the ability of m144 to regulate NK cell-mediated responses in vivo. Significantly, the accumulation of NK cells in the peritoneum was reduced in mice challenged with RMA-S-m144, as was the lytic activity of NK cells recovered from the peritoneum. Expression of m144 on RMA-S cells also conferred resistance to cytotoxicity mediated in vitro by interleukin 2-activated adherent spleen NK cells. In summary, the data demonstrate that m144 confers some protection from NK cell effector function mediated in the absence of target cell class I expression, but that in vivo the major effect of m144 is to regulate NK cell accumulation and activation at the site of immune challenge.


Subject(s)
Graft Rejection/immunology , Histocompatibility Antigens Class I , Killer Cells, Natural/immunology , Lymphoma, T-Cell/immunology , Muromegalovirus/immunology , Viral Proteins/physiology , Animals , Cell Movement/immunology , Cytotoxicity, Immunologic/genetics , Graft Rejection/genetics , Histocompatibility Antigens Class I/genetics , Immunity, Innate , Killer Cells, Natural/virology , Lymphocyte Activation , Lymphoma, T-Cell/genetics , Lymphoma, T-Cell/metabolism , Lymphoma, T-Cell/virology , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Neoplasm Transplantation , Sequence Homology, Amino Acid , Transfection , Tumor Cells, Cultured , Viral Proteins/biosynthesis , Viral Proteins/immunology
8.
Immunol Rev ; 168: 187-97, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10399075

ABSTRACT

Natural killer (NK) cells are an important component of the innate cellular immune system. They are particularly important during the early immune responses following virus infection, prior to the induction of cytotoxic T cells (CTL). Unlike CTL, which recognize specific peptides displayed on the surface of cells by class I MHC, NK cells respond to aberrant expression of cell surface molecules, in particular class I MHC, in a non-specific manner. Thus, cells expressing low levels of surface class I MHC are susceptible to recognition by NK cells, with concomitant triggering of cytolytic and cytokine-mediated responses. Many viruses, including the cytomegaloviruses, downregulate cell surface MHC class I: this is likely to provide protection against CTL-mediated clearance of infected cells, but may also render infected cells sensitive to NK-cell attack. This review focuses upon cytomegalovirus-encoded proteins that are believed to promote evasion of NK-cell-mediated immunity. The class I MHC homologues, encoded by all cytomegaloviruses characterised to date, have been implicated as molecular 'decoys', which may mimic the ability of cellular MHC class I to inhibit NK-cell functions. Results from studies in vitro are not uniform, but in general they support the proposal that the class I homologues engage inhibitory receptors from NK cells and other cell types that normally interact with cellular class I. Consistent with this, in vivo studies of murine cytomegalovirus indicate that the class I homologue is required for efficient evasion of NK-cell-mediated clearance. Recently a second murine cytomegalovirus protein, a C-C chemokine homologue, has been implicated as promoting evasion of NK and T-cell-mediated clearance in vivo.


Subject(s)
Capsid Proteins , Cytomegalovirus/immunology , Killer Cells, Natural/immunology , Animals , Capsid/immunology , Herpesviridae Infections/immunology , Histocompatibility Antigens Class I/immunology , Humans , Muromegalovirus/immunology , Viral Proteins/immunology
9.
EMBO J ; 16(17): 5386-97, 1997 Sep 01.
Article in English | MEDLINE | ID: mdl-9311998

ABSTRACT

TRAIL is a member of the tumor necrosis factor (TNF) family of cytokines and induces apoptosis in a wide variety of cells. Based on homology searching of a private database, a receptor for TRAIL (DR4 or TRAIL-R1) was recently identified. Here we report the identification of a distinct receptor for TRAIL, TRAIL-R2, by ligand-based affinity purification and subsequent molecular cloning. TRAIL-R2 was purified independently as the only receptor for TRAIL detectable on the surface of two different human cell lines that undergo apoptosis upon stimulation with TRAIL. TRAIL-R2 contains two extracellular cysteine-rich repeats, typical for TNF receptor (TNFR) family members, and a cytoplasmic death domain. TRAIL binds to recombinant cell-surface-expressed TRAIL-R2, and TRAIL-induced apoptosis is inhibited by a TRAIL-R2-Fc fusion protein. TRAIL-R2 mRNA is widely expressed and the gene encoding TRAIL-R2 is located on human chromosome 8p22-21. Like TRAIL-R1, TRAIL-R2 engages a caspase-dependent apoptotic pathway but, in contrast to TRAIL-R1, TRAIL-R2 mediates apoptosis via the intracellular adaptor molecule FADD/MORT1. The existence of two distinct receptors for the same ligand suggests an unexpected complexity to TRAIL biology, reminiscent of dual receptors for TNF, the canonical member of this family.


Subject(s)
Adaptor Proteins, Signal Transducing , Apoptosis , Membrane Glycoproteins/metabolism , Receptors, Tumor Necrosis Factor/metabolism , Tumor Necrosis Factor-alpha/metabolism , Amino Acid Sequence , Apoptosis Regulatory Proteins , B-Lymphocytes/metabolism , Base Sequence , Carrier Proteins/metabolism , Chromosome Mapping , Chromosomes, Human, Pair 8 , Cloning, Molecular , Cysteine Endopeptidases/metabolism , Fas-Associated Death Domain Protein , Humans , Molecular Sequence Data , RNA, Messenger/analysis , Receptors, TNF-Related Apoptosis-Inducing Ligand , Receptors, Tumor Necrosis Factor/genetics , Receptors, Tumor Necrosis Factor/isolation & purification , Sequence Analysis , Sequence Homology, Amino Acid , Serine Proteinase Inhibitors/pharmacology , Signal Transduction , TNF-Related Apoptosis-Inducing Ligand , Tissue Distribution
10.
J Exp Med ; 186(7): 1165-70, 1997 Oct 06.
Article in English | MEDLINE | ID: mdl-9314565

ABSTRACT

TRAIL-R3, a new member of the TRAIL receptor family, has been cloned and characterized. TRAIL-R3 encodes a 299 amino acid protein with 58 and 54% overall identity to TRAIL-R1 and -R2, respectively. Transient expression and quantitative binding studies show TRAIL-R3 to be a plasma membrane-bound protein capable of high affinity interaction with the TRAIL ligand. The TRAIL-R3 gene maps to human chromosome 8p22-21, clustered with the genes encoding two other TRAIL receptors. In contrast to TRAIL-R1 and -R2, this receptor shows restricted expression, with transcripts detectable only in peripheral blood lymphocytes and spleen. The structure of TRAIL-R3 is unique when compared to the other TRAIL receptors in that it lacks a cytoplasmic domain and appears to be glycosyl-phosphatidylinositol-linked. Moreover, unlike TRAIL-R1 and -R2, in a transient overexpression system TRAIL-R3 does not induce apoptosis.


Subject(s)
Membrane Glycoproteins/metabolism , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/metabolism , Receptors, Tumor Necrosis Factor , Tumor Necrosis Factor-alpha/metabolism , Amino Acid Sequence , Apoptosis/physiology , Apoptosis Regulatory Proteins , Base Sequence , Blotting, Northern , Chromosome Mapping , Chromosomes, Human, Pair 8/genetics , Cloning, Molecular , GPI-Linked Proteins , Gene Expression Regulation , Glycosylphosphatidylinositols , Humans , Immunoglobulin Fc Fragments/genetics , Jurkat Cells , Lymphocytes/chemistry , Lymphocytes/metabolism , Membrane Glycoproteins/pharmacology , Molecular Sequence Data , Protein Binding , Receptors, Cell Surface/genetics , Receptors, Tumor Necrosis Factor, Member 10c , Recombinant Fusion Proteins/pharmacology , Sequence Analysis, DNA , Sequence Homology, Amino Acid , TNF-Related Apoptosis-Inducing Ligand , Tumor Necrosis Factor Decoy Receptors , Tumor Necrosis Factor-alpha/pharmacology
11.
J Immunol ; 158(4): 1756-62, 1997 Feb 15.
Article in English | MEDLINE | ID: mdl-9029113

ABSTRACT

The lymphotoxin beta receptor (LT beta R) was originally described as a transcribed sequence encoded on human chromosome 12p, with homology to the TNF receptor family. Subsequently, a recombinant LT beta R was shown to bind LT alpha LT beta heteromeric complexes. In this study, we have shown that LT beta R is expressed in a variety of tissues and cell lines of monocytic lineage, as well as in fibroblast and human melanoma cell lines. Unlike other members of the TNF receptor family, LT beta R is not expressed by peripheral blood T cells. A chimeric fusion protein consisting of the extracellular domain of LT beta R fused to the Fc region of human IgG1 was used to develop mAbs against LT beta R. Cross-linking LT beta R on A375 melanoma cells with these Abs generated an antiproliferative signal. In addition, the IL-8 and RANTES chemokines, early indicators of inflammation, were secreted by the A375 melanoma line and the WI38VA13 fibroblast line in response to cross-linking of LT beta R. These same activities could be induced by membrane-bound and soluble LT beta and LT alpha LT beta oligomers.


Subject(s)
Chemokines/biosynthesis , Growth Inhibitors/physiology , Lymphotoxin-alpha/metabolism , Lymphotoxin-alpha/physiology , Melanoma/immunology , Melanoma/pathology , Membrane Proteins/metabolism , Membrane Proteins/physiology , Receptors, Tumor Necrosis Factor/metabolism , Receptors, Tumor Necrosis Factor/physiology , Adult , Antibodies, Monoclonal/biosynthesis , Biopolymers , Cross-Linking Reagents , Fetus , Growth Inhibitors/metabolism , Humans , Immunoglobulin Fc Fragments/biosynthesis , Lymphotoxin beta Receptor , Lymphotoxin-alpha/immunology , Lymphotoxin-beta , Melanoma/metabolism , Membrane Proteins/immunology , Membrane Proteins/pharmacology , Receptors, Tumor Necrosis Factor/immunology , Solubility , Tissue Distribution , Tumor Cells, Cultured
12.
Immunity ; 7(6): 813-20, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9430226

ABSTRACT

A fourth member of the emerging TRAIL receptor family, TRAIL-R4, has been cloned and characterized. TRAIL-R4 encodes a 386-amino acid protein with an extracellular domain showing 58%-70% identity to those of TRAIL-R1, TRAIL-R2, and TRAIL-R3. The signaling capacity of TRAIL-R4 is similar to that of TRAIL-R1 and TRAIL-R2 with respect to NF-kappaB activation, but differs in its inability to induce apoptosis. Yet TRAIL-R4 retains a C-terminal element containing one third of a consensus death domain motif. Transient overexpression of TRAIL-R4 in cells normally sensitive to TRAIL-mediated killing confers complete protection, suggesting that one function of TRAIL-R4 may be inhibition of TRAIL cytotoxicity. Like TRAIL-R1 and TRAIL-R2, this receptor shows widespread tissue expression. The human TRAIL-R4 gene has been mapped to chromosome 8p22-21, clustered with three other TRAIL receptors.


Subject(s)
Apoptosis , Membrane Glycoproteins/metabolism , NF-kappa B/metabolism , Receptors, Tumor Necrosis Factor/metabolism , Tumor Necrosis Factor-alpha/metabolism , Amino Acid Sequence , Apoptosis Regulatory Proteins , Base Sequence , Binding Sites , DNA, Complementary , Humans , Jurkat Cells , Molecular Sequence Data , Receptors, TNF-Related Apoptosis-Inducing Ligand , Receptors, Tumor Necrosis Factor/genetics , Sequence Homology, Amino Acid , TNF-Related Apoptosis-Inducing Ligand , Tissue Distribution
13.
Clin Exp Immunol ; 106(3): 568-76, 1996 Dec.
Article in English | MEDLINE | ID: mdl-8973629

ABSTRACT

PERB11 (MIC) is a gene family possessing multiple copies located within the MHC. Structurally, PERB11 is related to the MHC class I, neonatal IgG Fc receptor (FcRn) and Zn-alpha 2-glycoprotein molecules. The MHC class I family is complex in terms of its genomic arrangement, expression and function, and available evidence suggests that the PERB11 family may be similarly complex. We have adopted an approach to study the expression of such complex gene families by immunizing with multiple peptides and by screening the resulting antibodies against a large range of tissues. The amino acid sequences of PERB11.1 and PERB11.2 as well as those of other related molecules were analysed and compared. Peptides were chosen for immunization based upon (i) loop formation within the equivalent known structure of the MHC class I molecules; (ii) immunogenicity by computer analysis; and (iii) evolutionary relationships. Antibodies in serum from immunized rabbits bound to three out of six peptides used for immunization. ELISA and immunoprecipitation demonstrated binding both to the peptides and to the PERB11.2 recombinant protein. By immunofluorescent staining of various tissues of several species, the three antisera generated overlapping profiles of activity. These included reactions with kidney, small and large intestine, oesophagus, testis, ovary and human neutrophils. This is the first description of antibodies induced by the PERB11 peptides. The extreme complexity of these profiles requires further investigation, but may be explained in terms of antibodies against diverse products of the PERB11 gene family and/or related molecules.


Subject(s)
Antibodies, Antinuclear/biosynthesis , HLA Antigens/immunology , Histocompatibility Antigens Class I/genetics , Histocompatibility Antigens Class I/immunology , Peptides/immunology , Proteins/immunology , Amino Acid Sequence , Animals , Antibodies, Antinuclear/immunology , Antibody Specificity , HLA Antigens/genetics , Humans , Immunization/methods , Molecular Sequence Data , Organ Specificity/immunology , Peptides/genetics , Proteins/genetics , RNA, Long Noncoding , RNA, Untranslated , Rabbits
15.
Eur J Immunogenet ; 21(6): 431-46, 1994 Dec.
Article in English | MEDLINE | ID: mdl-9098453

ABSTRACT

Many new Major Histocompatibility Complex (MHC) genes have been discovered in the last 5 years. Defining the polymorphism of these new genes may elucidate their function and their relevance to diseases with MHC associations. Polymerase chain reaction and single stranded conformation polymorphism (PCR SSCP) analyses were used to detect sequence polymorphisms of PERB1 demonstrated by comparing the available genomic sequence of four haplotypes. This study showed that PCR SSCP of PERB1 is reproducible. In addition, PERB1 alleles segregate within families together with MHC haplotypes. Typing results from the Forth Asia and Oceania Histocompatibility Workshop (4AOHW) cell panel indicate that the identified polymorphisms of PERB1 are "haplotypic', i.e., unrelated individuals carrying the same MHC ancestral haplotypes carry the same PERB1 SSCP pattern. Interestingly, PERB1 SSCP patterns allow the distinction of ancestral haplotypes which share HLA-B serological specificities, such as HLA-B44 and therefore this analysis can be used to further define MHC haplotypes and thus to improve our understanding of the evolution of this complex.


Subject(s)
Major Histocompatibility Complex , Polymorphism, Genetic , Alleles , Base Sequence , DNA/genetics , DNA Primers/genetics , Female , Genetic Markers , Genotype , HLA-B Antigens/genetics , Haplotypes , Histocompatibility Testing , Humans , Male , Pedigree , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational , Receptors, Fibroblast Growth Factor/genetics
16.
Immunogenetics ; 40(5): 339-51, 1994.
Article in English | MEDLINE | ID: mdl-7927538

ABSTRACT

We have used genomic analysis to characterize a region of the central major histocompatibility complex (MHC) spanning approximately 300 kilobases (kb) between TNF and HLA-B. This region has been suggested to carry genetic factors relevant to the development of autoimmune diseases such as myasthenia gravis (MG) and insulin dependent diabetes mellitus (IDDM). Genomic sequence was analyzed for coding potential, using two neural network programs, GRAIL and GeneParser. A genomic probe, JAB, containing putative coding sequences (PERB11) located 60 kb centromeric of HLA-B, was used for northern analysis of human tissues. Multiple transcripts were detected. Southern analysis of genomic DNA and overlapping YAC clones, covering the region from BAT1 to HLA-F, indicated that there are at least five copies of PERB11, four of which are located within this region of the MHC. The partial cDNA sequence of PERB11 was obtained from poly-A RNA derived from skeletal muscle. The putative amino acid sequence of PERB11 shares approximately 30% identity to MHC class I molecules from various species, including reptiles, chickens, and frogs, as well as to other MHC class I-like molecules, such as the IgG FcR of the mouse and rat and the human Zn-alpha 2-glycoprotein. From direct comparison of amino acid sequences, it is concluded that PERB11 is a distinct molecule more closely related to nonmammalian than known mammalian MHC class I molecules. Genomic sequence analysis of PERB11 from five MHC ancestral haplotypes (AH) indicated that the gene is polymorphic at both DNA and protein level. The results suggest that we have identified a novel polymorphic gene family with multiple copies within the MHC.


Subject(s)
Histocompatibility Antigens Class I/genetics , Major Histocompatibility Complex/genetics , Multigene Family , Proteins/genetics , Adult , Amino Acid Sequence , Animals , Base Sequence , Blotting, Southern , Exons , Female , Genome , Humans , Molecular Sequence Data , Phylogeny , Polymorphism, Genetic , RNA, Long Noncoding , RNA, Untranslated
17.
Eur J Immunogenet ; 20(5): 373-80, 1993 Oct.
Article in English | MEDLINE | ID: mdl-9098405

ABSTRACT

The aim of this study was to characterize MHC mutant cell lines by studying haplospecific markers within the MHC and specifically in the 250 kilobase (kb) region between the HLA B and TNF loci. This region has been difficult to define because of the lack of appropriate markers. Spontaneous MHC mutants were isolated after immunoselection with an anti-HLA A2 monoclonal antibody and complement. Ten mutants were characterized using serological or allelic and genomic DNA markers within the HLA A to HLA DQ region of the MHC. Most mutants lost at least the 3 megabases of DNA from HLA A to HLA DQ viz the whole haplotype carrying HLA A2. Variants which have lost either HlA A alone or HLA A and HLA B were also found. The results show that it is possible to map the extent of the deletion between HLA B and TNF. Haplospecific scanning patterns for the CL region appear particularly useful.


Subject(s)
Haplotypes , Major Histocompatibility Complex , Mutation , Cell Line , Gene Deletion , Genetic Markers , Genome, Human , HLA Antigens/genetics , Histocompatibility Testing , Humans , Multigene Family , Polymorphism, Restriction Fragment Length , Serotyping , Tumor Necrosis Factor-alpha/genetics
18.
Hum Immunol ; 38(1): 24-9, 1993 Sep.
Article in English | MEDLINE | ID: mdl-8307783

ABSTRACT

The MHC is a region of some 4 megabases that has been studied intensively owing to the large number of diseases that are associated with susceptibility genes within this region of the genome. The total number of genes located within the MHC is now approximately 100, but more can be predicted. Recently identified genes within the MHC include PERB6, a large gene producing multiple transcripts located between HLA-B and TNF, and PERB1, a member of the protein tyrosine kinase-gene family. PERB6 was identified by YAC probing of tissue blots, while PERB1 was identified by genomic sequencing.


Subject(s)
Genome, Human , Major Histocompatibility Complex/genetics , Chromosome Mapping , Chromosomes, Artificial, Yeast , DNA Probes , Diabetes Mellitus, Type 1/genetics , Exons/genetics , Haplotypes/genetics , Humans , Myasthenia Gravis/genetics , Protein-Tyrosine Kinases/genetics , RNA, Messenger/analysis
19.
Hum Immunol ; 38(1): 3-16, 1993 Sep.
Article in English | MEDLINE | ID: mdl-8307784

ABSTRACT

There will be a continuing need for well characterized panels of EBV-transformed lymphoblastoid cell lines. Selection of the 4AOH panel was based on prior MHC typing and was intended to ensure representation of ancestral haplotypes from various racial groups. Cells from nonhuman primates, bone marrow donor-recipient pairs, and patients with IDDM were included. Selected cells from the 10IHW were included to enable further characterization. Cells were distributed to participants in the 4AOHW and were typed at multiple loci by a variety of procedures. Non-HLA genes such as TNF were included. Since the cells were distributed "blind" with hidden replicates, it was possible to evaluate the quality of the typing data. An approach to data management is described. The best current estimates of the typing of these cells are presented. The panel will be useful since it provides standards for most alleles at most loci. Since the cells are so well characterized, they represent a useful resource for MHC sequencing and for the evaluation of new typing procedures.


Subject(s)
Cell Line, Transformed/classification , Cell Line, Transformed/immunology , Databases, Factual , Histocompatibility Testing , Alleles , Animals , Asia/ethnology , Cell Transformation, Viral , Demography , HLA Antigens/genetics , Haplotypes , Herpesvirus 4, Human , Humans , Lymphocyte Activation , Pacific Islands/ethnology
20.
Hum Immunol ; 38(1): 52-6, 1993 Sep.
Article in English | MEDLINE | ID: mdl-8307787

ABSTRACT

Alloreactivity of human NK cells was tested on a subset of the 4AOHW cell panel. A total of 37 cells were typed with NK clones reactive with the NK-1, 2, 3, and 5 allospecificities. No cell was susceptible to lysis by both by anti-NK-1 and anti-NK-2 clones in accordance with the notion of a biallelic system, where the susceptibility toward lysis is a recessive trait. HLA homozygous cells were lysed either by the anti-NK-1 or anti-NK-2 clones while HLA heterozygous cells in some cases were not lysed by either clone. Negativity for the NK-1 specificity corresponded to the presence of asparagine and lysine at positions 77 and 80, respectively, in the second exon of HLA-C (alleles Cw2, 4, 5, and 6), while negativity for the NK-2 group corresponded to the presence of serine and asparagine, respectively, at these two positions (alleles Cw1, 3, 7, and 8). Too few cells were typed with clones reactive with the NK-3 and NK-5 specificities to enable an analysis of correlation between these specificities and HLA alleles.


Subject(s)
Histocompatibility Testing/methods , Immunity, Cellular , Isoantigens/immunology , Killer Cells, Natural/immunology , Alleles , Amino Acid Sequence , Cell Line, Transformed/immunology , Clone Cells , HLA-C Antigens/genetics , Heterozygote , Homozygote , Humans , Killer Cells, Natural/cytology , Molecular Sequence Data , Polymorphism, Genetic , Sequence Homology, Amino Acid
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