Reply to the 'Comment on Cage occupancy of methane clathrate hydrates in the ternary H2O-NH3-CH4 system' by S. Alavi and J. Ripmeester, Chem. Commun., 2022, 58, DOI: 10.1039/D1CC06526B.

Our recent Communication suggested that ammonia in aqueous solution may preferentially destabilize large cages in methane clathrate hydrates. A Comment favored ammonia incorporation instead, but it did not accurately describe our proposed mechanism and relied primarily on studies conducted in different chemical systems and/or which used other preparation methods.

Promoting the Insertion of Molecular Hydrogen in Tetrahydrofuran Hydrate With the Help of Acidic Additives.

Among hydrogen storage materials, hydrogen hydrates have received a particular attention over the last decades. The pure hydrogen hydrate is generated only at extremely high-pressure (few thousands of bars) and the formation conditions are known to be softened by co-including guest molecules such as tetrahydrofuran (THF). Since this discovery, there have been considerable efforts to optimize the storage capacities in hydrates through the variability of the formation condition, of the cage occupancy, of the chemical composition or of the hydrate structure (ranging from clathrate to semi-clathrate). In addition to this issue, the hydrogen insertion mechanism plays also a crucial role not only at a fundamental level, but also in view of potential applications. This paper aims at studying the molecular hydrogen diffusion in the THF hydrate by in-situ confocal Raman microspectroscopy and imaging, and at investigating the impact of strong acid onto this diffusive process. This study represents the first report to shed light on hydrogen diffusion in acidic THF-H2 hydrate. Integrating the present result with those from previous experimental investigations, it is shown that the hydrogen insertion in the THF hydrate is optimum for a pressure of ca. 55 bar at 270 K. Moreover, the co-inclusion of perchloric acid (with concentration as low as 1 acidic molecules per 136 water molecules) lead to promote the molecular hydrogen insertion within the hydrate structure. The hydrogen diffusion coefficient-measured at 270 K and 200 bar-is improved by a factor of 2 thanks to the acidic additive.

Cage occupancy of methane clathrate hydrates in the ternary H2O-NH3-CH4 system.

The incorporation of ammonia inside methane clathrate hydrate is of great interest to the hydrate chemistry community. We investigated the phase behavior of methane clathrate formed from aqueous ammonia solution. Ammonia's presence decreases methane occupancy in the large cages, without definitive Raman spectroscopic evidence for its incorporation inside the structure.

Gas Hydrate Crystallization in Thin Glass Capillaries: Roles of Supercooling and Wettability.

We designed and implemented an experimental methodology to investigate gas hydrate formation and growth around a water-guest meniscus in a thin glass capillary, thus mimicking pore-scale processes in sediments. The glass capillary acts as a high-pressure optical cell in a range of supercooling conditions from 0.1 °C, i.e., very close to hydrate dissociation conditions, to ∼35 °C, very near the metastability limit. Liquid or gaseous CO2 is the guest phase in most of the experiments reported in this paper, and N2 in a few of them. The setup affords detailed microscopic observation of the roles of the key parameters on hydrate growth and interaction with the substrate: supercooling and substrate wettability. At low supercooling (less than 0.5 °C), a novel hydrate growth process is discovered, which consists of a hollow crystal originating from the meniscus and advancing on the guest side along the glass, fed by a thick water layer sandwiched between the glass and this crystal.

Unraveling the metastability of the SI and SII carbon monoxide hydrate with a combined DFT-neutron diffraction investigation.

Clathrate hydrates are crystalline compounds consisting of water molecules forming cages (so-called "host") inside of which "guest" molecules are encapsulated depending on the thermodynamic conditions of formation (systems stable at low temperature and high pressure). These icelike systems are naturally abundant on Earth and are generally expected to exist on icy celestial bodies. Carbon monoxide hydrate might be considered an important component of the carbon cycle in the solar system since CO gas is one of the predominant forms of carbon. Intriguing fundamental properties have also been reported: the CO hydrate initially forms in the sI structure (kinetically favored) and transforms into the sII structure (thermodynamically stable). Understanding and predicting the gas hydrate structural stability then become essential. The aim of this work is, thereby, to study the structural and energetic properties of the CO hydrate using density functional theory (DFT) calculations together with neutron diffraction measurements. In addition to the comparison of DFT-derived structural properties with those from experimental neutron diffraction, the originality of this work lies in the DFT-derived energy calculations performed on a complete unit cell (sI and sII) and not only by considering guest molecules confined in an isolated water cage (as usually performed for extracting the binding energies). Interestingly, an excellent agreement (within less than 1% error) is found between the measured and DFT-derived unit cell parameters by considering the Perdew-Burke-Ernzerhof (denoted PBE) functional. Moreover, a strategy is proposed for evaluating the hydrate structural stability on the basis of potential energy analysis of the total nonbonding energies (i.e., binding energy and water substructure nonbonding energy). It is found that the sII structure is the thermodynamically stable hydrate phase. In addition, increasing the CO content in the large cages has a stabilizing effect on the sII structure, while it destabilizes the sI structure. Such findings are in agreement with the recent experimental results evidencing the structural metastability of the CO hydrate.

Selective trapping of CO2 gas and cage occupancy in CO2-N2 and CO2-CO mixed gas hydrates.

Hydrate-based CO2 trapping from CO2-N2 and CO2-CO gas mixtures is shown by Raman spectroscopy - the results are of interest for new separation and capture technology. A better trapping efficiency is measured for low CO2 concentrations and N2-based gas mixtures. Moreover, it is observed that CO molecules would impede hydrate formation from ice when a CO-enriched gas mixture is considered.

Proton diffusion in the hexafluorophosphoric acid clathrate hydrate.

The hexafluorophosphoric acid clathrate hydrate is known as a "super-protonic" conductor: its proton conductivity is of the order of 0.1 S/cm at ca. room temperature. The long-range proton diffusion and the associated mechanism have been analyzed with the help of incoherent quasi-elastic neutron scattering (QENS) and proton pulsed-field-gradient nuclear magnetic resonance ((1)H PFG-NMR). The system crystallizes into the so-called type I clathrate structure (SI) at low temperature and into the type VII structure (SVII) above ca. 230 K with a melting point close to room temperature. While, in the SI phase, no long-range proton diffusion is observed (at least faster than the present measurement capabilities, i.e., 10(-7) cm(2)·s(-1)) with respect to the probed time scale, both techniques evidence a long-range proton diffusion process in the SVII phase (3.85 × 10(-6) cm(2)·s(-1) at 275 K with an activation energy of 0.19 ± 0.04 eV). QENS experiments lead to modeling the microscopic mechanism of the long-range proton diffusion by means of a Chudley-Elliot jump diffusion model with a characteristic jump distance of 2.79 ± 0.17 Å. In other words, the long-range diffusion occurs through a Grotthus mechanism with proton jumping from one water-oxygen site to another. Moreover, the analysis of the proton diffusion for hydration numbers greater than 6 (i.e., in the SVII structure) reveals that the additional water molecules coexisting with the SVII structure act as a "structural defect" barrier for the proton diffusivity, responsible for the conductivity.

Kinetics of molecular transport in a nanoporous crystal studied by confocal Raman microspectrometry: single-file diffusion in a densely filled tunnel.

Confocal Raman microspectrometry has been used as an in situ probe of the transport of guest molecules along the one-dimensional tunnels in a crystalline urea inclusion compound, under conditions of guest exchange in which "new" guest molecules (pentadecane) are introduced at one end of the tunnel and displace the "original" guest molecules (1,8-dibromooctane). The Raman spectra, recorded as a function of position along the tunnel direction and as a function of time, have been used to establish details of the kinetics of the guest transport process. In particular, the transport of the new pentadecane guest molecules along the tunnel is found to exhibit a linear dependence on time, with the rate of the process in the region of 70-100 nm s-1. Mechanistic aspects relating to the guest transport process are discussed.

Mechanistic aspects of the solid-state transformation of ammonium cyanate to urea at high pressure.

The chemical transformation of ammonium cyanate into urea has been of interest to many generations of scientists since its discovery by Friedrich Wöhler in 1828. Although widely studied both experimentally and theoretically, several mechanistic aspects of this reaction remain to be understood. In this paper, we apply computational methods to investigate the behavior of ammonium cyanate in the solid state under high pressure, employing a theoretical approach based on the self-consistent-charges density-functional tight-binding method (SCC-DFTB). The ammonium cyanate crystal structure was relaxed under external pressure ranging from 0 to 700 GPa, leading to the identification of five structural phases. Significantly, the phase at highest pressure (above 535 GPa) corresponds to the formation of urea molecules. At ca. 25 GPa, there is a phase transition of ammonium cyanate (from tetragonal P4/nmm to monoclinic P21/m) involving a rearrangement of the ammonium cyanate molecules. This transformation is critical for the subsequent transformation to urea. The crystalline phase of urea obtained above 535 GPa also has P21/m symmetry (Z = 2). This polymorph of urea has never been reported previously. Comparisons to the known (tetragonal) polymorph of urea found experimentally at ambient pressure suggests that the new polymorph is more stable above ca. 8 GPa. Our computational studies show that the transformation of ammonium cyanate into urea is strongly exothermic (enthalpy change -170 kJ mol-1 per formula unit between 530 and 535 GPa). The proposed mechanism for this transformation involves the transfer of two hydrogen atoms of the ammonium cation toward nitrogen atoms of neighboring cyanate anions, and the remaining NH2 group creates a C-NH2 bond with the cyanate unit.

The dynamical properties of the aromatic hydrogen bond in NH4(C6H5)4B from quasielastic neutron scattering.

NH(4)(C(6)H(5))(4)B represents a prototypical system for understanding aromatic H bonds. In NH(4)(C(6)H(5))(4)B an ammonium cation is trapped in an aromatic cage of four phenyl rings and each phenyl ring serves as a hydrogen bond acceptor for the ammonium ion as donor. Here the dynamical properties of the aromatic hydrogen bond in NH(4)(C(6)H(5))(4)B were studied by quasielastic incoherent neutron scattering in a broad temperature range (20< or =T< or =350 K). We show that in the temperature range from 67 to 350 K the ammonium ions perform rotational jumps around C(3) axes. The correlation time for this motion is the lifetime of the "transient" H bonds. It varies from 1.5 ps at T=350 K to 150 ps at T=67 K. The activation energy was found to be 3.14 kJ mol, which means only 1.05 kJ mol per single H bond for reorientations around the C(3) symmetry axis of the ammonium group. This result shows that the ammonium ions have to overcome an exceptionally low barrier to rotate and thereby break their H bonds. In addition, at temperatures above 200 K local diffusive reorientational motions of the phenyl rings, probably caused by interaction with ammonium-group reorientations, were found within the experimental observation time window. At room temperature a reorientation angle of 8.4 degrees +/-2 degrees and a correlation time of 22+/-8 ps were determined for the latter. The aromatic H bonds are extremely short lived due to the low potential barriers allowing for molecular motions with a reorientational character of the donors. The alternating rupture and formation of H bonds causes very strong damping of the librational motion of the acceptors, making the transient H bond appear rather flexible.

Water dynamics in hardened ordinary Portland cement paste or concrete: from quasielastic neutron scattering.

Portland cement reacts with water to form an amorphous paste through a chemical reaction called hydration. In concrete the formation of pastes causes the mix to harden and gain strength to form a rock-like mass. Within this process lies the key to a remarkable peculiarity of concrete: it is plastic and soft when newly mixed, strong and durable when hardened. These qualities explain why one material, concrete, can build skyscrapers, bridges, sidewalks and superhighways, houses, and dams. The character of the concrete is determined by the quality of the paste. Creep and shrinkage of concrete specimens occur during the loss and gain of water from cement paste. To better understand the role of water in mature concrete, a series of quasielastic neutron scattering (QENS) experiments were carried out on cement pastes with water/cement ratio varying between 0.32 and 0.6. The samples were cured for about 28 days in sealed containers so that the initial water content would not change. These experiments were carried out with an actual sample of Portland cement rather than with the components of cement studied by other workers. The QENS spectra differentiated between three different water interactions: water that was chemically bound into the cement paste, the physically bound or "glassy water" that interacted with the surface of the gel pores in the paste, and unbound water molecules that are confined within the larger capillary pores of cement paste. The dynamics of the "glassy" and "unboud" water in an extended time scale, from a hundred picoseconds to a few nanoseconds, could be clearly differentiated from the data. While the observed motions on the picosecond time scale are mainly stochastic reorientations of the water molecules, the dynamics observed on the nanosecond range can be attributed to long-range diffusion. Diffusive motion was characterized by diffusion constants in the range of (0.6-2) 10(-9) m(2)/s, with significant reduction compared to the rate of diffusion for bulk water. This reduction of the water diffusion is discussed in terms of the interaction of the water with the calcium silicate gel and the ions present in the pore water.

Significant conformational changes associated with molecular transport in a crystalline solid.

Confocal Raman microspectrometry has been applied as an in situ probe of the transport of guest molecules along the one-dimensional tunnels in a crystalline urea inclusion compound, under conditions of guest exchange in which "new" guest molecules (pentadecane) are introduced at one end of the tunnel and displace the "original" guest molecules (1,8-dibromooctane). The Raman spectra, recorded as a function of position along the tunnel direction and as a function of time, demonstrate that the transport process is associated with a significant change in the conformational properties of the original (1,8-dibromooctane) guest molecules. In particular, in the boundary region between the original and new guest molecules, there is a substantial increase in the proportion of 1,8-dibromooctane guest molecules that have the gauche end-group conformation. The wider implications of this observation are discussed in relation to fundamental aspects of the molecular transport process in this material.

Inelastic neutron scattering study of electron reduction in Mn12 derivatives.

We report inelastic neutron scattering (INS) studies on a series of Mn(12) derivatives, [Mn(12)O(12)(O2CC6F5)16(H2O)4]z, in which the number of unpaired electrons in the cluster is varied. We investigated three oxidation levels: z = 0 for the neutral complex, z = -1 for the one-electron reduced species and z = -2 for the two-electron reduced complex. For z = 0, the ground state is S = 10 as in the prototypical Mn12-acetate. For z = -1, we have S = 19/2, and for z = - 2, an S = 10 ground state is retrieved. INS studies show that the axial zero-field splitting parameter D is strongly suppressed upon successive electron reduction: D = -0.45 cm(-1) (z = 0), D = -0.35 cm(-1) (z = -1), and D approximately -0.26 cm(-1) (z = -2). Each electron reduction step is directly correlated to the conversion of one anisotropic (Jahn-Teller distorted) Mn3+ (S = 2) to one nearly isotropic Mn2+ (S = 5/2).

Direct time-resolved and spatially resolved monitoring of molecular transport in a crystalline nanochannel system.

Confocal Raman microspectrometry has been applied successfully as an in situ probe of the transport of guest molecules through the one-dimensional channel system in a crystalline inclusion compound, yielding insights into the spatial distribution of guest molecules and, in particular, the variation in the spatial distribution of the guest molecules as a function of time during the transport process.

Proton dynamics in the perchloric acid clathrate hydrate HClO4.5.5H2O.

In the perchloric acid clathrate hydrate HClO4.5.5H2O, the perchlorate anions are contained inside an aqueous host crystalline matrix, positively charged because of the presence of delocalized acidic protons. Our experimental results demonstrate that the microscopic mechanisms of proton conductivity in this system are effective on a time scale ranging from nanosecond to picosecond. In the present paper, we discuss more specifically on the relaxation processes occurring on a nanosecond time scale by combining high-resolution quasielastic neutron scattering and 1H pulse-field-gradient nuclear magnetic resonance experiments. The combination of these two techniques allows us to probe proton dynamics in both space and time domains. The existence of two types of proton dynamical processes has been identified. The slowest one is associated to long-range translational diffusion of protons between crystallographic oxygen sites and has been precisely characterized with a self-diffusion coefficient of 3.5 x 10(-8) cm2/s at 220 K and an activation energy of 29.2+/-1.4 kJ/mol. The fastest dynamical process is due to water molecules' reorientations occurring every 0.7 ns at 220 K with an activation energy of 17.4+/-1.5 kJ/mol. This powerful multitechnique approach provides important information required to understand the microscopic origin of proton transport in an ionic clathrate hydrate.