A novel method to predict protein-protein interactions based on the information of protein-protein interaction networks and protein sequence.

Protein-protein interactions (PPIs) are crucial to most biochemical processes in human beings. Although many human PPIs have been identified by experiments, the number is still limited compared to the available protein sequences of human organisms. Recently, many computational methods have been proposed to facilitate the recognition of novel human PPIs. However the existing methods only concentrated on the information of individual PPI, while the systematic characteristic of protein-protein interaction networks (PINs) was ignored. In this study, a new method was proposed by combining the global information of PINs and protein sequence information. Random forest (RF) algorithm was implemented to develop the prediction model, and a high accuracy of 91.88% was obtained. Furthermore, the RF model was tested using three independent datasets with good performances, suggesting that our method is a useful tool for identification of PPIs and investigation into PINs as well.

A semi-supervised learning based method: Laplacian support vector machine used in diabetes disease diagnosis.

Pattern recognition methods could be of great help to disease diagnosis. In this study, a semi-supervised learning based method, Laplacian support vector machine (LapSVM), was used in diabetes diseases prediction. The diabetes disease dataset used in this article is Pima Indians diabetes dataset obtained from the UCI Repository of Machine Learning Databases and all patients in the dataset are females at least 21 years old of Pima Indian heritage. Firstly, LapSVM was trained as a fully-supervised learning classifier to predict diabetes dataset and 79.17% accuracy was obtained. Then, it was trained as a semi-supervised learning classifier and we got the prediction accuracy 82.29%. The obtained accuracy 82.29% is higher than other previous reports. The experiments led to the finding that LapSVM offers a very promising application, i.e., LapSVM can be used to solve a fully-supervised learning problem by solving a semi-supervised learning problem. The result suggests that LapSVM can be of great help to physicians in the process of diagnosing diabetes disease and it could be a very promising method in the situations where a lot of data are not class-labeled.