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1.
PLoS One ; 17(6): e0265416, 2022.
Article in English | MEDLINE | ID: mdl-35737690

ABSTRACT

To give an insight into the different manifestations of leprosy and their biological consequences in the Avar Age of the Hungarian Duna-Tisza Interfluve, two cases from the 7th-century-CE osteoarchaeological series of Kiskundorozsma-Daruhalom-dulo II (Hungary; n = 94) were investigated. Based on the macromorphology of the bony changes indicative of Hansen's disease, KD271 (a middle-aged male) and KD520 (a middle-aged female) represent the two extremes of leprosy. KD271 appears to have an advanced-stage, long-standing near-lepromatous or lepromatous form of the disease, affecting not only the rhinomaxillary region but also both upper and lower limbs. This has led to severe deformation and disfigurement of the involved anatomical areas of the skeleton, resulting in his inability to perform the basic activities of daily living, such as eating, drinking, grasping, standing or walking. The skeleton of KD520 shows no rhinomaxillary lesions and indicates the other extreme of leprosy, a near-tuberculoid or tuberculoid form of the disease. As in KD271, Hansen's disease has resulted in disfigurement and disability of both of the lower limbs of KD520; and thus, the middle-aged female would have experienced difficulties in standing, walking, and conducting occupational physical activities. KD271 and KD520 are amongst the very few published cases with leprosy from the Avar Age of the Hungarian Duna-Tisza Interfluve, and the only examples with detailed macromorphological description and differential diagnoses of the observed leprous bony changes. The cases of these two severely disabled individuals, especially of KD271 -who would have required regular and substantial care from others to survive-imply that in the Avar Age community of Kiskundorozsma-Daruhalom-dulo II there was a willingness to care for people in need.


Subject(s)
Activities of Daily Living , Leprosy , Benzodiazepines , Diagnosis, Differential , Female , Humans , Hungary , Leprosy/diagnosis , Male , Middle Aged , Sulfur
2.
Tuberculosis (Edinb) ; 126: 102037, 2021 01.
Article in English | MEDLINE | ID: mdl-33338873

ABSTRACT

Tuberculosis (TB) was a large burden of infections that peaked during the 19th century in Europe. Mummies from the 18th century CE, discovered in the crypt of a church at Vác, Hungary, had high TB prevalence, as revealed by amplification of key fragments of TB DNA and genome-wide TB analysis. Complementary methods are needed to confirm these diagnoses and one approach uses the identification of specific lipid biomarkers, such as TB mycocerosic acids (MCs). Previously, MC derivatives were profiled by specialised gas chromatography-mass spectrometry (GC-MS), so an alternative more direct approach has been developed. Underivatized MCs are extracted and analysed by high-performance liquid chromatography linked to a mass spectrometer, in heated electrospray ionisation mode (HPLC-HESI-MS). The method was validated using representatives of the Mycobacterium tuberculosis complex and other mycobacteria and tested on six Vác mummy cases, previously considered positive for TB infection. Analysing both rib and soft tissue samples, four out of six cases gave profiles of main C32 and major C29 and C39 mycocerosates correlating well with those of M. tuberculosis. Multidisciplinary methods are needed in the diagnosis of ancient tuberculosis; this new protocol accesses important confirmatory evidence, as demonstrated by the confirmation of TB in the Vác mummies.


Subject(s)
Chromatography, High Pressure Liquid/methods , DNA, Bacterial/analysis , Gas Chromatography-Mass Spectrometry/methods , Mummies/history , Mycobacterium tuberculosis/genetics , Paleopathology/history , Tuberculosis/history , Adult , Biomarkers/analysis , History, 18th Century , Humans , Hungary , Lipids/analysis , Middle Aged , Mummies/microbiology , Mycobacterium tuberculosis/metabolism , Paleopathology/methods , Tuberculosis/diagnosis , Tuberculosis/microbiology
3.
Tuberculosis (Edinb) ; 125: 101995, 2020 12.
Article in English | MEDLINE | ID: mdl-32979676

ABSTRACT

The Mycobacterium tuberculosis complex (MTC) has affected South American populations since ca. 200 years BCE. In Argentina, possible cases date from ca. 1000-1400 Common Era (CE). This paper describes the oldest (905-1030 CE) confirmed case of tuberculosis (TB) in a young adult male from Lomitas de Saujil (Tinogasta, Catamarca, Argentina). Osteolytic lesions on the bodies of the lower spine were macroscopically and radiographically identified. Bilateral new bone formation was seen on the visceral vertebral third of several ribs and in long bones, compatible with hypertrophic osteoarthropathy. Representative rib and hand bones gave profiles for MTC-specific C27-C32 mycocerosic acid lipid biomarkers; these were strongest in one heavily-lesioned lower rib, which also had MTC-diagnostic C76-C89 mycolic acids and positive amplification of MTC-typical IS6110 aDNA fragments. During the first millennium CE, the intense social interaction, the spatial circumscription of villages among the pre-Hispanic societies in the mesothermal valleys of Catamarca and the fluid contacts with the Eastern lowlands, valleys and puna, were factors likely to favor disease transmission. It is proposed that TB arrived from northern Chile and dispersed towards the northeast into the Yocavil valley, where several cases of TB infection were macroscopically identified for a later chronology.


Subject(s)
Bone and Bones/diagnostic imaging , DNA, Bacterial/history , Mycobacterium tuberculosis/genetics , Paleopathology/methods , Tuberculosis, Osteoarticular/history , Adult , Argentina/epidemiology , Bone and Bones/microbiology , DNA, Bacterial/analysis , History, 15th Century , History, 16th Century , History, Ancient , History, Medieval , Humans , Incidence , Male , Mycobacterium tuberculosis/isolation & purification , Tuberculosis, Osteoarticular/diagnosis , Tuberculosis, Osteoarticular/epidemiology
4.
Homo ; 70(2): 105-118, 2019 Oct 24.
Article in English | MEDLINE | ID: mdl-31486822

ABSTRACT

Orosháza site no. 10 (Southeast Hungary) contains the partially excavated archaeological remains of an 11-13th century CE Muslim merchant village and its cemetery located in close proximity to Christian villages of the same era. The skeleton of a young woman (grave no. 16) from the last phase of the cemetery use was identified with rhinomaxillary lesions associated with lepromatous leprosy. The right parietal bone also exhibited signs of cranial trauma, possibly caused by symbolic trepanation, a well-known ritual practice in the 9-11th century CE Carpathian Basin. The retrospective diagnosis of the disease was supported by ancient DNA analysis, as the samples were positive for Mycobacterium leprae aDNA, shown to be of genotype 3. Contrary to the general practice of the era, the body of the young female with severe signs of leprosy was interred among the regular graves of the Muslim cemetery in Orosháza, which may reflect the unique cultural background of the community.


Subject(s)
Cemeteries/history , Islam/history , Leprosy/history , Adult , Bone and Bones/microbiology , Bone and Bones/pathology , DNA, Ancient/analysis , DNA, Bacterial/analysis , DNA, Bacterial/genetics , Female , History, Medieval , Humans , Hungary , Leprosy/microbiology , Male , Mycobacterium leprae/genetics , Paleopathology , Young Adult
5.
Ann Hum Biol ; 46(2): 120-128, 2019 Mar.
Article in English | MEDLINE | ID: mdl-31137975

ABSTRACT

Context: Tuberculosis and leprosy are readily recognised in human remains due to their typical palaeopathology. Both Mycobacterium tuberculosis (MTB) and Mycobacterium leprae (ML) are obligate pathogens and have been detected in ancient human populations. Objective: To demonstrate historical tuberculosis and leprosy cases in Europe and beyond using molecular methods, as human populations are associated with different mycobacterial genotypes. Methods: MTB and ML ancient DNA (aDNA) has been detected by DNA amplification using PCR, or by whole genome sequencing. Mycobacterial cell wall lipids also provide specific markers for identification. Results: In 18th century Hungary, the European indigenous MTB genotype 4 strains have been found. However, many individuals were co-infected with up to three MTB sub-genotypes. In 8th-14th century Europe significant differences in ML genotypes were found between northwest Europe compared with central, southern, or eastern Europe. In addition, several co-infections of MTB and ML were detected in historical samples. Conclusion: Both MTB and ML strain types differ between geographically separate populations. This is associated with ancient human migration after an evolutionary bottleneck and clonal expansion. The absence of indigenous leprosy in Europe today may be due to the greater mortality of tuberculosis in individuals who are co-infected with both organisms.


Subject(s)
DNA, Ancient/analysis , Human Migration/history , Leprosy/history , Mycobacterium leprae/genetics , Mycobacterium tuberculosis/genetics , Tuberculosis/history , Europe , Genotype , History, 17th Century , History, 18th Century , History, Medieval , Humans , Leprosy/microbiology , Paleopathology , Polymerase Chain Reaction , Tuberculosis/microbiology , Whole Genome Sequencing
6.
PLoS Pathog ; 14(5): e1006997, 2018 05.
Article in English | MEDLINE | ID: mdl-29746563

ABSTRACT

Studying ancient DNA allows us to retrace the evolutionary history of human pathogens, such as Mycobacterium leprae, the main causative agent of leprosy. Leprosy is one of the oldest recorded and most stigmatizing diseases in human history. The disease was prevalent in Europe until the 16th century and is still endemic in many countries with over 200,000 new cases reported annually. Previous worldwide studies on modern and European medieval M. leprae genomes revealed that they cluster into several distinct branches of which two were present in medieval Northwestern Europe. In this study, we analyzed 10 new medieval M. leprae genomes including the so far oldest M. leprae genome from one of the earliest known cases of leprosy in the United Kingdom-a skeleton from the Great Chesterford cemetery with a calibrated age of 415-545 C.E. This dataset provides a genetic time transect of M. leprae diversity in Europe over the past 1500 years. We find M. leprae strains from four distinct branches to be present in the Early Medieval Period, and strains from three different branches were detected within a single cemetery from the High Medieval Period. Altogether these findings suggest a higher genetic diversity of M. leprae strains in medieval Europe at various time points than previously assumed. The resulting more complex picture of the past phylogeography of leprosy in Europe impacts current phylogeographical models of M. leprae dissemination. It suggests alternative models for the past spread of leprosy such as a wide spread prevalence of strains from different branches in Eurasia already in Antiquity or maybe even an origin in Western Eurasia. Furthermore, these results highlight how studying ancient M. leprae strains improves understanding the history of leprosy worldwide.


Subject(s)
Leprosy/history , Mycobacterium leprae/genetics , DNA, Bacterial/genetics , DNA, Bacterial/history , Europe/epidemiology , Evolution, Molecular , Genetic Variation , Genome, Bacterial , History, Medieval , Host-Pathogen Interactions/genetics , Humans , Leprosy/epidemiology , Leprosy/microbiology , Mycobacterium leprae/classification , Mycobacterium leprae/pathogenicity , Phylogeny , Phylogeography , Polymorphism, Single Nucleotide
7.
Am J Trop Med Hyg ; 97(4): 1103-1110, 2017 Oct.
Article in English | MEDLINE | ID: mdl-29031287

ABSTRACT

In Central America, few cases of leprosy have been reported, but the disease may be unrecognized. Diagnosis is based on clinical criteria and histology. Preliminary field work in Nicaragua and Honduras found patients, including many children, with skin lesions clinically suggestive of atypical cutaneous leishmaniasis or indeterminate leprosy. Histology could not distinguish these diseases although acid-fast organisms were visible in a few biopsies. Lesions healed after standard antimicrobial therapy for leprosy. In the present study, patients, family members, and other community members were skin-tested and provided nasal swabs and blood samples. Biopsies were taken from a subgroup of patients with clinical signs of infection. Two laboratories analyzed samples, using local in-house techniques. Mycobacterium leprae, Leishmania spp. and Leishmania infantum were detected using polymerase chain reactions. Mycobacterium leprae DNA was detected in blood samples and nasal swabs, including some cases where leprosy was not clinically suspected. Leishmania spp. were also detected in blood and nasal swabs. Most biopsies contained Leishmania DNA and coinfection of Leishmania spp. with M. leprae occurred in 33% of cases. Mycobacterium leprae DNA was also detected and sequenced from Nicaraguan and Honduran environmental samples. In conclusion, leprosy and leishmaniasis are present in both regions, and leprosy appears to be widespread. The nature of any relationship between these two pathogens and the epidemiology of these infections need to be elucidated.


Subject(s)
Leishmania/isolation & purification , Leishmaniasis, Cutaneous/diagnosis , Leishmaniasis, Cutaneous/epidemiology , Leprosy/diagnosis , Leprosy/epidemiology , Mycobacterium leprae/isolation & purification , Adult , Aged , Aged, 80 and over , Female , Honduras/epidemiology , Humans , Male , Middle Aged , Nicaragua/epidemiology , Polymerase Chain Reaction
8.
PLoS One ; 12(10): e0185966, 2017.
Article in English | MEDLINE | ID: mdl-29023477

ABSTRACT

At the Abony-Turjányos dulo site, located in Central Hungary, a rescue excavation was carried out. More than 400 features were excavated and dated to the Protoboleráz horizon, at the beginning of the Late Copper Age in the Carpathian Basin, between 3780-3650 cal BC. Besides the domestic and economic units, there were two special areas, with nine-nine pits that differed from the other archaeological features of the site. In the northern pit group seven pits contained human remains belonging to 48 individuals. Some of them were buried carefully, while others were thrown into the pits. The aim of this study is to present the results of the paleopathological and molecular analysis of human remains from this Late Copper Age site. The ratio of neonates to adults was high, 33.3%. Examination of the skeletons revealed a large number of pathological cases, enabling reconstruction of the health profile of the buried individuals. Based on the appearance and frequency of healed ante- and peri mortem trauma, inter-personal (intra-group) violence was characteristic in the Abony Late Copper Age population. However other traces of paleopathology were observed on the bones that appear not to have been caused by warfare or inter-group violence. The remains of one individual demonstrated a rare set of bone lesions that indicate the possible presence of leprosy (Hansen's disease). The most characteristic lesions occurred on the bones of the face, including erosion of the nasal aperture, atrophy of the anterior nasal spine, inflammation of the nasal bone and porosity on both the maxilla and the bones of the lower legs. In a further four cases, leprosy infection is suspected but other infections cannot be excluded. The morphologically diagnosed possible leprosy case significantly modifies our knowledge about the timescale and geographic spread of this specific infectious disease. However, it is not possible to determine the potential connections between the cases of possible leprosy and the special burial circumstances.


Subject(s)
Leprosy , Mycobacterium leprae/genetics , Paleopathology/methods , Adolescent , Adult , Burial , Child , Child, Preschool , Female , History, Ancient , Humans , Hungary , Hyperostosis/pathology , Infant , Leprosy/epidemiology , Leprosy/history , Leprosy/microbiology , Male , Middle Aged , Mycobacterium tuberculosis/genetics , Young Adult
9.
Infect Immun ; 85(12)2017 12.
Article in English | MEDLINE | ID: mdl-28923895

ABSTRACT

Mycobacterium canettii, which has a smooth colony morphology, is the tuberculous organism retaining the most genetic traits from the putative last common ancestor of the rough-morphology Mycobacterium tuberculosis complex. To explore whether M. canettii can infect individuals by the oral route, mice were fed phosphate-buffered saline or 106M. canettii mycobacteria and sacrificed over a 28-day experiment. While no M. canettii was detected in negative controls, M. canettii-infected mice yielded granuloma-like lesions for 4/4 lungs at days 14 and 28 postinoculation (p.i.) and positive PCR detection of M. canettii for 5/8 mesenteric lymph nodes at days 1 and 3 p.i. and 5/6 pooled stools collected from day 1 to day 28 p.i. Smooth M. canettii colonies grew from 68% of lungs and 36% of spleens and cervical lymph nodes but fewer than 20% of axillary lymph nodes, livers, brown fat samples, kidneys, or blood samples throughout the 28-day experiment. Ready translocation in mice after digestive tract challenge demonstrates the potential of ingested M. canettii organisms to relocate to distant organs and lungs. The demonstration of this relocation supports the possibility that populations may be infected by environmental M. canettii.


Subject(s)
Bacterial Translocation , Mycobacterium/physiology , Tuberculosis, Pulmonary/microbiology , Administration, Oral , Animals , Disease Models, Animal , Lung/microbiology , Lung/pathology , Lymph Nodes/microbiology , Mesentery/microbiology , Mesentery/pathology , Mice , Polymerase Chain Reaction , Spleen/microbiology
10.
Ann Hum Biol ; 44(6): 510-521, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28715914

ABSTRACT

BACKGROUND: The study of past infectious diseases increases knowledge of the presence, impact and spread of pathogens within ancient populations. AIM: Polymerase chain reaction (PCR) was used to examine bones for the presence of Mycobacterium leprae ancient DNA (aDNA) as, even when leprosy is present, bony changes are not always pathognomonic of the disease. This study also examined the demographic profile of this population and compared it with two other populations to investigate any changes in mortality trends between different infectious diseases and between the pre-antibiotic and antibiotic eras. SUBJECTS AND METHODS: The individuals were from a site in Central Italy (6th-8th CE) and were examined for the presence of Mycobacterium leprae aDNA. In addition, an abridged life mortality table was constructed. RESULTS: Two individuals had typical leprosy palaeopathology, and one was positive for Mycobacterium leprae aDNA. However, the demographic profile shows a mortality curve similar to that of the standard, in contrast to a population that had been subjected to bubonic plague. CONCLUSIONS: This study shows that, in the historical population with leprosy, the risk factors for health seem to be constant and distributed across all age classes, similar to what is found today in the antibiotic era. There were no peaks of mortality equivalent to those found in fatal diseases such as the plague, probably due to the long clinical course of leprosy.


Subject(s)
DNA, Ancient/analysis , Leprosy/history , Mycobacterium leprae/isolation & purification , Cemeteries , DNA, Ancient/isolation & purification , Demography , History, Medieval , Humans , Italy , Leprosy/microbiology , Mycobacterium leprae/genetics , Paleopathology
11.
Int J Infect Dis ; 56: 176-180, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27915106

ABSTRACT

Ancient and historical tuberculosis (TB) can be recognized by its typical paleopathology in human remains. Using paleomicrobiology, it is possible to detect many more individuals infected with TB but with no visible lesions. Due to advances in molecular analysis over the past two decades, it is clear that TB was widespread in humans from the Neolithic period and has remained so until the present day. Past human populations were associated with different lineages of the Mycobacterium tuberculosis complex, thereby elucidating early human migrations. Using paleomicrobiology, it is possible to detect individuals infected with TB who are also co-infected with other bacteria or parasites. TB is also found in hosts with co-morbidities such as neoplasms, or metabolic disorders such as rickets and scurvy. In well-preserved human skeletal or mummified tissue, whole genome sequencing has detected individuals with multiple infections of different M. tuberculosis strains. Such studies put modern findings into context and emphasize the importance of human population density in such circumstances.


Subject(s)
Mycobacterium tuberculosis/genetics , Paleopathology , Tuberculosis/history , Tuberculosis/microbiology , Coinfection/genetics , Coinfection/immunology , DNA, Bacterial/genetics , Evolution, Molecular , History, Ancient , Humans , Morbidity , Tuberculosis/immunology
12.
Microbiol Spectr ; 4(4)2016 08.
Article in English | MEDLINE | ID: mdl-27726782

ABSTRACT

Tuberculosis is a significant global disease today, so understanding its origins and history is important. It is primarily a lung infection and is transmitted by infectious aerosols from person to person, so a high population density encourages its spread. The causative organism is Mycobacterium tuberculosis, an obligate pathogen in the M. tuberculosis complex that also contains closely related species, such as Mycobacterium bovis, that primarily infect animals. Typical bone lesions occur in about 5% of untreated infections. These can be recognized in historical and archaeological material, along with nonspecific paleopathology such as new bone formation (periostitis), especially on ribs. Based on such lesions, tuberculosis has been found in ancient Egypt, pre-Columbian America, and Neolithic Europe. The detection of M. tuberculosis ancient DNA (aDNA) by using PCR led to the development of the new field of paleomicrobiology. As a result, a large number of tuberculosis cases were recognized in mummified tissue and bones with nonspecific or no lesions. In parallel with these developments, M. tuberculosis cell wall lipid biomarkers have detected tuberculosis suggested by paleopathology and confirmed aDNA findings. In well-preserved cases, molecular typing has identified M. tuberculosis lineages and genotypes. The current interest in targeted enrichment, shotgun sequencing, and metagenomic analysis reveals ancient mixed infections with different M. tuberculosis strains and other pathogens. Identification of M. tuberculosis lineages from samples of known age enables the date of the emergence of strains and lineages to be calculated directly rather than by making assumptions on the rate of evolutionary change.


Subject(s)
Fossils/microbiology , Microbiological Techniques/methods , Mycobacterium tuberculosis/isolation & purification , Paleopathology/methods , Tuberculosis/epidemiology , Tuberculosis/microbiology , Americas , Animals , DNA, Bacterial/genetics , DNA, Bacterial/isolation & purification , Egypt , Europe , History, 15th Century , History, 16th Century , History, 17th Century , History, 18th Century , History, 19th Century , History, 20th Century , History, 21st Century , History, Ancient , History, Medieval , Humans , Mycobacterium tuberculosis/classification , Mycobacterium tuberculosis/genetics , Phylogeny , Polymerase Chain Reaction , Tuberculosis/history
13.
Nat Commun ; 6: 6717, 2015 Apr 07.
Article in English | MEDLINE | ID: mdl-25848958

ABSTRACT

Tuberculosis (TB) was once a major killer in Europe, but it is unclear how the strains and patterns of infection at 'peak TB' relate to what we see today. Here we describe 14 genome sequences of M. tuberculosis, representing 12 distinct genotypes, obtained from human remains from eighteenth-century Hungary using metagenomics. All our historic genotypes belong to M. tuberculosis Lineage 4. Bayesian phylogenetic dating, based on samples with well-documented dates, places the most recent common ancestor of this lineage in the late Roman period. We find that most bodies yielded more than one M. tuberculosis genotype and we document an intimate epidemiological link between infections in two long-dead individuals. Our results suggest that metagenomic approaches usefully inform detection and characterization of historical and contemporary infections.


Subject(s)
Coinfection/microbiology , DNA, Bacterial/analysis , Genome, Bacterial/genetics , Mycobacterium tuberculosis/genetics , Tuberculosis/microbiology , Adult , Bayes Theorem , Europe/epidemiology , Female , Genotype , History, 18th Century , Humans , Hungary/epidemiology , Male , Metagenomics , Middle Aged , Molecular Epidemiology , Phylogeny , Tuberculosis/epidemiology , Tuberculosis/history , Young Adult
14.
Tuberculosis (Edinb) ; 95 Suppl 1: S69-72, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25814300

ABSTRACT

Two mummies of the Hungarian mummy collection from Vác were the subjects of anthropological, paleopathological, radiological, paleomicrobiological, paleohistological and paleoproteomic studies. Both individuals belonged to the same family. The father, József Nigrovits (No 29), died at the age of 55 on the 11th of November 1793; his son, Antal Nigrovits (No 54), died on the 16th of July 1803, at the age of 22. They lived in the 18th century in Vác, a small town in northern Hungary. The macroscopic examination of the son showed a severely deformed neck and back region; the father has no visible mark of any illnesses. As earlier researches showed that tuberculosis was widespread in the community, the etiology of these deformities was examined. The paleomicrobiological results found that both individuals were infected with tuberculosis. Although they suffered from TB, the CT scan data of the bodies and their 3D reconstructions showed no skeletal evidence of tuberculosis. The deformity of the son turned to be a developmental abnormality of unknown origin, but no Pott's gibbus was present.


Subject(s)
Tuberculosis, Osteoarticular/history , DNA, Bacterial/genetics , History, 18th Century , Humans , Hungary , Joint Deformities, Acquired/genetics , Joint Deformities, Acquired/history , Joint Deformities, Acquired/pathology , Male , Middle Aged , Mummies , Mycobacterium tuberculosis/genetics , Paleopathology , Polymerase Chain Reaction , Tomography, X-Ray Computed , Tuberculosis, Osteoarticular/genetics , Tuberculosis, Osteoarticular/pathology , Young Adult
15.
Tuberculosis (Edinb) ; 95 Suppl 1: S140-4, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25773651

ABSTRACT

Many tuberculosis and leprosy infections are latent or paucibacillary, suggesting a long time-scale for host and pathogen co-existence. Palaeopathology enables recognition of archaeological cases and PCR detects pathogen ancient DNA (aDNA). Mycobacterium tuberculosis and Mycobacterium leprae cell wall lipids are more stable than aDNA and restrict permeability, thereby possibly aiding long-term persistence of pathogen aDNA. Amplification of aDNA, using specific PCR primers designed for short fragments and linked to fluorescent probes, gives good results, especially when designed to target multi-copy loci. Such studies have confirmed tuberculosis and leprosy, including co-infections. Many tuberculosis cases have non-specific or no visible skeletal pathology, consistent with the natural history of this disease. M. tuberculosis and M. leprae are obligate parasites, closely associated with their human host following recent clonal distribution. Therefore genotyping based on single nucleotide polymorphisms (SNPs) can indicate their origins, spread and phylogeny. Knowledge of extant genetic lineages at particular times in past human populations can be obtained from well-preserved specimens where molecular typing is possible, using deletion analysis, microsatellite analysis and whole genome sequencing. Such studies have identified non-bovine tuberculosis from a Pleistocene bison from 17,500 years BP, human tuberculosis from 9000 years ago and leprosy from over 2000 years ago.


Subject(s)
DNA, Bacterial/analysis , Evolution, Molecular , Leprosy/genetics , Mycobacterium leprae/genetics , Mycobacterium tuberculosis/genetics , Tuberculosis/genetics , Bacterial Typing Techniques , Coinfection/complications , Coinfection/genetics , Coinfection/history , DNA, Bacterial/genetics , Genome, Bacterial , History, Ancient , Humans , Leprosy/complications , Leprosy/history , Molecular Typing/methods , Nucleic Acid Amplification Techniques , Paleopathology/methods , Polymerase Chain Reaction , Tuberculosis/complications , Tuberculosis/history
16.
Tuberculosis (Edinb) ; 95 Suppl 1: S145-9, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25771203

ABSTRACT

The demonstration of Mycobacterium tuberculosis DNA in ancient skeletons gives researchers an insight into its evolution. Findings of the last two decades sketched the biological relationships between the various species of tubercle bacilli, the time scale involved, their possible origin and dispersal. This paper includes the available evidence and on-going research. In the submerged Eastern Mediterranean Neolithic village of Atlit Yam (9000 BP), a human lineage of M. tuberculosis, defined by the TbD1 deletion in its genome, was demonstrated. An infected infant at the site provides an example of active tuberculosis in a human with a naïve immune system. Over 4000 years later tuberculosis was found in Jericho. Urbanization increases population density encouraging M. tuberculosis/human co-evolution. As susceptible humans die of tuberculosis, survivors develop genetic resistance to disease. Thus in 18th century Hungarian mummies from Vác, 65% were positive for tuberculosis yet a 95-year-old woman had clearly survived a childhood Ghon lesion. Whole genome studies are in progress, to detect changes over the millennia both in bacterial virulence and also host susceptibility/resistance genes that determine the NRAMP protein and Killer Cell Immunoglobulin-like Receptors (KIRs). This paper surveys present evidence and includes initial findings.


Subject(s)
Evolution, Molecular , Genome, Bacterial/genetics , Genome, Human/genetics , Mycobacterium tuberculosis/genetics , Tuberculosis/genetics , Animals , Cation Transport Proteins/genetics , Cattle , Disease Resistance/genetics , Genetic Predisposition to Disease/genetics , Genetic Predisposition to Disease/history , Genotype , History, 18th Century , History, 19th Century , History, Ancient , Host-Pathogen Interactions/genetics , Humans , Mummies , Paleopathology , Tuberculosis/history
17.
Tuberculosis (Edinb) ; 95 Suppl 1: S35-41, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25771204

ABSTRACT

Macromorphological analysis of skeletons, from 20 selected graves of the 8th century AD Bélmegyer-Csömöki domb, revealed 19 cases of possible skeletal tuberculosis. Biomolecular analyses provided general support for such diagnoses, including the individual without pathology, but the data did not show coherent consistency over the range of biomarkers examined. Amplification of ancient DNA fragments found evidence for the Mycobacterium tuberculosis complex DNA only in five graves. In contrast, varying degrees of lipid biomarker presence were recorded in all except two of the skeletons, though most lipid components appeared to be somewhat degraded. Mycobacterial mycolic acid biomarkers were absent in five cases, but the weak, possibly degraded profiles for the remainder were smaller and inconclusive for either tuberculosis or leprosy. The most positive lipid biomarker evidence for tuberculosis was provided by mycolipenic acid, with 13 clear cases, supported by five distinct possible cases. Combinations of mycocerosic acids were present in all but three graves, but in one case a tuberculosis-leprosy co-infection was indicated. In two specimens with pathology, no lipid biomarker evidence was recorded, but one of these specimens provided M. tuberculosis complex DNA fragments.


Subject(s)
Tuberculosis, Osteoarticular/pathology , Adult , Aged , Biomarkers/analysis , Chromatography, High Pressure Liquid , DNA, Bacterial/genetics , Female , History, Medieval , Humans , Hungary , Lipids/analysis , Male , Middle Aged , Mycobacterium tuberculosis/genetics , Mycolic Acids/analysis , Nucleic Acid Amplification Techniques , Paleopathology , Polymerase Chain Reaction , Tuberculosis, Osteoarticular/genetics , Tuberculosis, Osteoarticular/history , Young Adult
18.
Tuberculosis (Edinb) ; 95 Suppl 1: S127-32, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25797611

ABSTRACT

Studies on the evolution of tuberculosis, and the influence of this disease on human and animal development and interaction, require the accumulation of indisputable biomarker evidence. Ideally, the determination of full genomes would provide all the necessary information, but for very old specimens DNA preservation may be compromised and only limited DNA amplification may be a possibility. Mycobacterium tuberculosis is characterised by the presence of unusual cell envelope lipids, with specific biomarker potential. Lipid biomarker recognition has been decisive in pinpointing the oldest known cases of human and animal tuberculosis; the former are a woman and child from a pre-pottery settlement at Atlit-Yam, Israel (∼9,000 ka) and the latter is an extinct Bison antiquus from Natural Trap Cave, Wyoming (∼17,000 ka). Including some new data, it is demonstrated how analysis of a combination of mycolic, mycocerosic and mycolipenic acid and phthiocerol biomarkers provide incontrovertible evidence for tuberculosis in these landmark specimens.


Subject(s)
Biological Evolution , Lipids/genetics , Paleopathology/methods , Tuberculosis, Osteoarticular/history , Animals , Biomarkers/analysis , Cattle , Child, Preschool , Female , History, Ancient , Humans , Lipids/analysis , Mycolic Acids/analysis , Tuberculosis, Osteoarticular/genetics
19.
Tuberculosis (Edinb) ; 95 Suppl 1: S133-9, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25736170

ABSTRACT

Mycobacterium tuberculosis has a cell envelope incorporating a peptidoglycan-linked arabinogalactan esterified by long-chain mycolic acids. A range of "free" lipids are associated with the "bound" mycolic acids, producing an effective envelope outer membrane. The distribution of these lipids is discontinuous among mycobacteria and such lipids have proven potential for biomarker use in tracing the evolution of tuberculosis. A plausible evolutionary scenario involves progression from an environmental organism, such as Mycobacterium kansasii, through intermediate "smooth" tubercle bacilli, labelled "Mycobacterium canettii"; cell envelope lipid composition possibly correlates with such a progression. M. kansasii and "M. canettii" have characteristic lipooligosaccharides, associated with motility and biofilms, and glycosyl phenolphthiocerol dimycocerosates ("phenolic glycolipids"). Both these lipid classes are absent in modern M. tuberculosis sensu stricto, though simplified phenolic glycolipids remain in certain current biotypes. Dimycocerosates of the phthiocerol family are restricted to smaller phthiodiolone diesters in M. kansasii. Diacyl and pentaacyl trehaloses are present in "M. canettii" and M. tuberculosis, accompanied in the latter by related sulfated acyl trehaloses. In comparison with environmental mycobacteria, subtle modifications in mycolic acid structures in "M. canettii" and M. tuberculosis are notable. The probability of essential tuberculosis evolution taking place in Pleistocene megafauna, rather than Homo sapiens, is reemphasised.


Subject(s)
Evolution, Molecular , Membrane Lipids/genetics , Mycobacterium tuberculosis/genetics , Tuberculosis/genetics , Animals , Biomarkers/metabolism , Glycolipids/metabolism , History, Ancient , Humans , Lipid Metabolism/genetics , Membrane Lipids/chemistry , Mycolic Acids/analysis , Mycolic Acids/chemistry , Tuberculosis/history , Zoonoses/genetics , Zoonoses/history
20.
Tuberculosis (Edinb) ; 95 Suppl 1: S13-7, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25736538

ABSTRACT

This study derives from the macroscopic analysis of a Late Neolithic population from Hungary. Remains were recovered from a tell settlement at Hódmezovásárhely-Gorzsa from graves within the settlement as well as pits, ditches, houses and as stray finds. One of the most important discoveries from these remains was evidence of tuberculosis. Pathological analysis of the seventy-one individuals revealed numerous cases of infections and non-specific stress indicators on juveniles and adults, metabolic diseases on juveniles, and evidence of trauma and mechanical changes on adults. Several cases showed potential signs of tuberculosis and further analyses were undertaken, including biomolecular studies. The five individuals were all very young adults and included a striking case of Hypertrophic Pulmonary Osteopathy (HPO) with rib changes, one case with resorptive lesions on the vertebrae, two cases with hypervascularisation on the vertebrae and periosteal remodelling on the ribs, and one case with abnormal blood vessel impressions and a possible lesion on the endocranial surface of the skull. The initial macroscopic diagnosis of these five cases was confirmed by lipid biomarker analyses, and three of them were corroborated by DNA analysis. At present, these 7000-year-old individuals are among the oldest palaeopathological and palaeomicrobiological cases of tuberculosis worldwide.


Subject(s)
Tuberculosis, Osteoarticular/history , Adolescent , Biomarkers/analysis , DNA, Bacterial/genetics , Female , History, Ancient , Humans , Hungary , Infant , Lipids/analysis , Male , Mycobacterium tuberculosis/genetics , Paleopathology , Tuberculosis, Osteoarticular/genetics , Tuberculosis, Spinal/history , Young Adult
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