Using biological traits to assess diet selection: the case of the Pyrenean Desman.

Traditionally, researchers have assessed diet selection by comparing consumed versus available taxa. However, taxonomic assignment is probably irrelevant for predators, who likely base their selection on characteristics including prey size, habitat, or behavior. Here, we use an aquatic insectivore, the threatened Pyrenean Desman (Galemys pyrenaicus), as a model species to assess whether biological traits help unravel the criteria driving food and habitat preferences. We reanalyzed data from a previous taxonomy-based study of prey selection in two contrasting streams, one with excellent conservation status and the other affected by diversion for hydropower and forestry. Available and consumed prey were characterized according to nine biological traits, and diet selection was estimated by comparing availability-measured from Surber net samples, and consumption-analyzed by metabarcoding desman feces. Traits offered a biologically coherent image of diet and almost identical selection patterns in both streams, depicting a highly specialized rheophilic predator. Desmans positively selected prey with a preference for fast flow and boulder substrate, indicating their preferred riffle habitat. On the other hand, they positively selected prey with larger but not the largest potential size, living in the water column or the litter, and not inside sediments. They also chose agile prey, swimmers or prey attached to the substrate, prey with high body flexibility, and prey living exposed and clustered in groups. Overall, our results offer a picture of desman diet preference and point to biological traits as being better than taxonomic identity to describe the diet preference of consumers.

Tradicionalmente, los investigadores han estimado la selección de dieta comparando los taxones ingeridos con los disponibles. Sin embargo, la asignación taxonómica probablemente sea irrelevante para los depredadores, que probablemente basan su selección en características tales como el tamaño de presa, su hábitat o su comportamiento. Aquí, utilizamos como especie modelo un insectívoro acuático, el amenazado desmán ibérico (Galemys pyrenaicus), para evaluar si los rasgos biológicos ayudan a desvelar los criterios que rigen las preferencias de alimentos y de hábitat. Reanalizamos los datos de un estudio previo basado en taxonomía sobre la selección de presas de desmán en dos ríos diferentes, uno en excelente estado de conservación y el otro afectado por la derivación de agua para producción de energía hidroeléctrica y por actividades forestales. Se caracterizaron las presas disponibles y consumidas en función de nueve rasgos biológicos y se estimó la selección de dieta comparando la disponibilidad, medida a partir de muestras de redes Surber, y el consumo, determinado mediante metabarcoding de las heces del desmán. Los rasgos biológicos ofrecieron una imagen biológicamente coherente de la dieta y unos patrones de selección casi idénticos en ambos ríos, representando a un depredador reófilo altamente especializado. Los desmanes seleccionaron positivamente las presas con preferencia por corriente rápida y sustrato de bloques, indicando su preferencia de hábitat por los rápidos. Por otro lado, seleccionaron positivamente presas con tamaño potencial grande­pero no el mayor­, que vivían en la columna de agua o en la hojarasca, y no dentro de los sedimentos. También eligieron presas ágiles, presas nadadoras o adheridas al sustrato, presas con alta flexibilidad corporal y presas que viven expuestas y agrupadas. En general, nuestros resultados ofrecen una imagen de las preferencias tróficas del desmán y apuntan a que los rasgos biológicos de las presas describen las preferencias tróficas de los consumidores mejor que su identidad taxonómica.

Determining diet from faeces: Selection of metabarcoding primers for the insectivore Pyrenean desman (Galemys pyrenaicus).

Molecular techniques allow non-invasive dietary studies from faeces, providing an invaluable tool to unveil ecological requirements of endangered or elusive species. They contribute to progress on important issues such as genomics, population genetics, dietary studies or reproductive analyses, essential knowledge for conservation biology. Nevertheless, these techniques require general methods to be tailored to the specific research objectives, as well as to substrate- and species-specific constraints. In this pilot study we test a range of available primers to optimise diet analysis from metabarcoding of faeces of a generalist aquatic insectivore, the endangered Pyrenean desman (Galemys pyrenaicus, É. Geoffroy Saint-Hilaire, 1811, Talpidae), as a step to improve the knowledge of the conservation biology of this species. Twenty-four faeces were collected in the field, DNA was extracted from them, and fragments of the standard barcode region (COI) were PCR amplified by using five primer sets (Brandon-Mong, Gillet, Leray, Meusnier and Zeale). PCR outputs were sequenced on the Illumina MiSeq platform, sequences were processed, clustered into OTUs (Operational Taxonomic Units) using UPARSE algorithm and BLASTed against the NCBI database. Although all primer sets successfully amplified their target fragments, they differed considerably in the amounts of sequence reads, rough OTUs, and taxonomically assigned OTUs. Primer sets consistently identified a few abundant prey taxa, probably representing the staple food of the Pyrenean desman. However, they differed in the less common prey groups. Overall, the combination of Gillet and Zeale primer sets were most cost-effective to identify the widest taxonomic range of prey as well as the desman itself, which could be further improved stepwise by adding sequentially the outputs of Leray, Brandon-Mong and Meusnier primers. These results are relevant for the conservation biology of this endangered species as they allow a better characterization of its food and habitat requirements.