Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 22
Filter
Add more filters











Publication year range
1.
Biosci Biotechnol Biochem ; 75(12): 2376-83, 2011.
Article in English | MEDLINE | ID: mdl-22146731

ABSTRACT

The mevalonic acid (MVA) and methylerythritol phosphate (MEP) pathways for isoprenoid biosynthesis both culminate in the production of the two-five carbon prenyl diphosphates: dimethylallyl diphosphate (DMAPP) and isopentenyl diphosphate (IPP). These are the building blocks for higher isoprenoids, including many that have industrial and pharmaceutical applications. With growing interest in producing commercial isoprenoids through microbial engineering, reports have appeared of toxicity associated with the accumulation of prenyl diphosphates in Escherichia coli expressing a heterologous MVA pathway. Here we explored whether similar prenyl diphosphate toxicity, related to MEP pathway flux, could also be observed in the bacterium Bacillus subtilis. After genetic and metabolic manipulations of the endogenous MEP pathway in B. subtilis, measurements of cell growth, MEP pathway flux, and DMAPP contents suggested cytotoxicity related to prenyl diphosphate accumulation. These results have implications as to understanding the factors impacting isoprenoid biosynthesis in microbial systems.


Subject(s)
Bacillus subtilis/metabolism , Cytotoxins/biosynthesis , Terpenes/metabolism , Bacillus subtilis/cytology , Bacillus subtilis/drug effects , Bacillus subtilis/genetics , Butadienes , Carbon-Carbon Double Bond Isomerases/deficiency , Carbon-Carbon Double Bond Isomerases/genetics , Cell Proliferation/drug effects , Erythritol/analogs & derivatives , Erythritol/metabolism , Fosfomycin/analogs & derivatives , Fosfomycin/pharmacology , Genetic Engineering , Hemiterpenes/biosynthesis , Organophosphorus Compounds , Pentanes , Sequence Deletion , Sugar Phosphates/metabolism
2.
Bioorg Med Chem Lett ; 21(18): 5583-8, 2011 Sep 15.
Article in English | MEDLINE | ID: mdl-21784632

ABSTRACT

We have recently characterized sliding motility in Bacillus subtilis strains that lack functional flagella, and here describe the discovery of inhibitors of colony spreading in these strains as well as the aflagellate pathogen, Bacillus anthracis. Aflagellate B. subtilis strains were used to screen for new types of antibacterials that might inhibit colony spreading on semi-solid media. From a diverse set of organic structures, p-nitrophenylglycerol (NPG), an agent used primarily in clinical laboratories to control Proteus swarming, was found to inhibit colony spreading. The four stereoisomers of NPG were synthesized and tested, and only the 1R,2S-(1R-anti) and 1R,2R-(1R-syn) NPG isomers had significant activity in a quantitative colony-spreading assay. Twenty-six NPG analogs and related structures were synthesized and tested to identify more active inhibitors. p-Methylsulfonylphenylglycerol (p-SPG), but not its ortho or meta analogs, was found to be the most effective of these compounds, and synthesis and testing of all four p-SPG stereoisomers showed that the 1R-anti-isomer was the most active with an average IC(50) of 16 µM (3-5 µg mL(-1)). For B. anthracis, the colony-spreading IC(50) values for 1R-anti-SPG and 1R-anti-NPG are 12 µM (2-4 µg mL(-1)) and >150 µM, respectively. For both Bacillus species tested, 1R-anti-SPG inhibits colony spreading of surface cultures on agar plates, but is not bacteriostatic or bacteriocidal in liquid cultures. Work is in progress to find the cellular target(s) of the NPG/SPG class of compounds, since this could lead to an understanding of the mechanism(s) of colony spreading as well as design and development of more potent inhibitors for the control of B. anthracis surface cultures.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacillus anthracis/drug effects , Bacillus subtilis/drug effects , Glycerol/analogs & derivatives , Nitrobenzenes/pharmacology , Sulfones/pharmacology , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/chemistry , Bacillus anthracis/cytology , Bacillus anthracis/growth & development , Bacillus subtilis/cytology , Bacillus subtilis/growth & development , Dose-Response Relationship, Drug , Drug Discovery , Glycerol/chemical synthesis , Glycerol/chemistry , Glycerol/pharmacology , Microbial Sensitivity Tests , Molecular Structure , Nitrobenzenes/chemical synthesis , Nitrobenzenes/chemistry , Stereoisomerism , Structure-Activity Relationship , Sulfones/chemical synthesis , Sulfones/chemistry
3.
Proc Natl Acad Sci U S A ; 108(22): 8966-71, 2011 May 31.
Article in English | MEDLINE | ID: mdl-21576489

ABSTRACT

We measured isocyanic acid (HNCO) in laboratory biomass fires at levels up to 600 parts per billion by volume (ppbv), demonstrating that it has a significant source from pyrolysis/combustion of biomass. We also measured HNCO at mixing ratios up to 200 pptv (parts-per-trillion by volume) in ambient air in urban Los Angeles, CA, and in Boulder, CO, during the recent 2010 Fourmile Canyon fire. Further, our measurements of aqueous solubility show that HNCO is highly soluble, as it dissociates at physiological pH. Exposure levels > 1 ppbv provide a direct source of isocyanic acid and cyanate ion (NCO(-)) to humans at levels that have recognized health effects: atherosclerosis, cataracts, and rheumatoid arthritis, through the mechanism of protein carbamylation. In addition to the wildland fire and urban sources, we observed HNCO in tobacco smoke, HNCO has been reported from the low-temperature combustion of coal, and as a by-product of urea-selective catalytic reduction (SCR) systems that are being phased-in to control on-road diesel NO(x) emissions in the United States and the European Union. Given the current levels of exposure in populations that burn biomass or use tobacco, the expected growth in biomass burning emissions with warmer, drier regional climates, and planned increase in diesel SCR controls, it is imperative that we understand the extent and effects of this HNCO exposure.


Subject(s)
Air Pollutants , Cyanates/analysis , Smoke , Atmosphere , Biomass , California , Carbon/chemistry , Carbon Monoxide/chemistry , Catalysis , Colorado , Cyanates/chemistry , Dose-Response Relationship, Drug , Fires , Hydrogen-Ion Concentration , Nitric Oxide/chemistry , Protons , Solubility , Temperature
4.
FEMS Microbiol Lett ; 298(1): 12-9, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19659723

ABSTRACT

Growing tendrils of aflagellate hag mutants of Bacillus subtilis were found to show an avoidance response when colonizing a semi-solid medium, suggesting a tip-to-tip communication mechanism between colonies. There may be a second sensing mechanism involved in shaping the morphology of tendrils. Tendril growth in B. subtilis was dependent on and possibly shaped by the release of surfactin, a biosurfactant. Transposon mutagenesis yielded two mutants with 'touching' tendrils, and each had a disrupted gspA gene that encodes a putative glycosyltransferase. Tendrils of gspA mutants, unlike the parental strain, were unresponsive to tendril tip growth by surfactin, suggesting disruption of intercellular signaling. Tendril sensing and avoidance could be physiologically relevant in habitats, such as plant roots, where some limiting nutrient might induce this type of multicellular behavior, promoting avoidance of previously explored areas by sibling colonies.


Subject(s)
Bacillus subtilis/physiology , Signal Transduction , Bacillus subtilis/growth & development , Bacillus subtilis/metabolism , Bacterial Proteins/genetics , DNA Transposable Elements , Heat-Shock Proteins/genetics , Lipopeptides/metabolism , Mutagenesis, Insertional , Peptides, Cyclic/metabolism
5.
Appl Environ Microbiol ; 75(15): 5121-30, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19502432

ABSTRACT

Bacteria and fungi are ubiquitous in the atmosphere. The diversity and abundance of airborne microbes may be strongly influenced by atmospheric conditions or even influence atmospheric conditions themselves by acting as ice nucleators. However, few comprehensive studies have described the diversity and dynamics of airborne bacteria and fungi based on culture-independent techniques. We document atmospheric microbial abundance, community composition, and ice nucleation at a high-elevation site in northwestern Colorado. We used a standard small-subunit rRNA gene Sanger sequencing approach for total microbial community analysis and a bacteria-specific 16S rRNA bar-coded pyrosequencing approach (4,864 sequences total). During the 2-week collection period, total microbial abundances were relatively constant, ranging from 9.6 x 10(5) to 6.6 x 10(6) cells m(-3) of air, and the diversity and composition of the airborne microbial communities were also relatively static. Bacteria and fungi were nearly equivalent, and members of the proteobacterial groups Burkholderiales and Moraxellaceae (particularly the genus Psychrobacter) were dominant. These taxa were not always the most abundant in freshly fallen snow samples collected at this site. Although there was minimal variability in microbial abundances and composition within the atmosphere, the number of biological ice nuclei increased significantly during periods of high relative humidity. However, these changes in ice nuclei numbers were not associated with changes in the relative abundances of the most commonly studied ice-nucleating bacteria.


Subject(s)
Air Microbiology , Bacteria/classification , Bacteria/isolation & purification , Biodiversity , Fungi/classification , Fungi/isolation & purification , Ice , Bacteria/genetics , Cluster Analysis , Colony Count, Microbial , Colorado , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Fungal/chemistry , DNA, Fungal/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Fungi/genetics , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 18S/genetics , Sequence Analysis, DNA
6.
Philos Trans A Math Phys Eng Sci ; 365(1856): 1677-95, 2007 Jul 15.
Article in English | MEDLINE | ID: mdl-17513269

ABSTRACT

Coupled surface-atmosphere models are being used with increased frequency to make predictions of tropospheric chemistry on a 'future' earth characterized by a warmer climate and elevated atmospheric CO2 concentration. One of the key inputs to these models is the emission of isoprene from forest ecosystems. Most models in current use rely on a scheme by which global change is coupled to changes in terrestrial net primary productivity (NPP) which, in turn, is coupled to changes in the magnitude of isoprene emissions. In this study, we conducted measurements of isoprene emissions at three prominent global change experiments in the United States. Our results showed that growth in an atmosphere of elevated CO2 inhibited the emission of isoprene at levels that completely compensate for possible increases in emission due to increases in aboveground NPP. Exposure to a prolonged drought caused leaves to increase their isoprene emissions despite reductions in photosynthesis, and presumably NPP. Thus, the current generation of models intended to predict the response of isoprene emission to future global change probably contain large errors. A framework is offered as a foundation for constructing new isoprene emission models based on the responses of leaf biochemistry to future climate change and elevated atmospheric CO2 concentrations.


Subject(s)
Atmosphere , Butadienes , Ecosystem , Greenhouse Effect , Hemiterpenes , Pentanes , Trees , Models, Theoretical , United States
7.
BMC Microbiol ; 6: 31, 2006 Mar 17.
Article in English | MEDLINE | ID: mdl-16545127

ABSTRACT

BACKGROUND: We have recently shown that undomesticated strains of Bacillus subtilis can extensively colonize the surfaces of rich, semi-solid media, by a flagellum-independent mechanism and suggested that sliding motility is responsible for surface migration. Here we have used a flagella-less hag null mutant to examine and confirm sliding motility. RESULTS: Using a defined semi-solid medium we determined that a B. subtilis hag mutant colonized the surface in two stages, first as tendril-like clusters of cells followed by a profuse pellicle-like film. We determined the levels of macro- and micro-nutrients required for the tendril-to-film transition. Sufficient levels of each of the macronutrients, glycerol, Na-glutamate, and Na-phosphate, and inorganic nutrients, K+, Mg2+, Fe2+ and Mn2+, were required for robust film formation. The K+ requirement was quantified in more detail, and the thresholds for complete tendril coverage (50 microM KCl) or film coverage (2-3 mM KCl) were determined. In addition, disruption of the genes for the higher affinity K+ transporter (KtrAB), but not the lower affinity K+ transporter (KtrCD), strongly inhibited the formation of both tendrils and films, and could be partially overcome by high levels of KCl. Examination of hag tendrils by confocal scanning laser microscopy revealed that tendrils are multicellular structures, but that the cells are not as highly organized as cells in wild-type B. subtilis pellicles. CONCLUSION: These results suggest that B. subtilis can use sliding motility to colonize surfaces, using a tendril-like growth mode when various macronutrients or micronutrients are limiting. If nutrients are balanced and sufficient, the surfaces between tendrils can be colonized by robust surface films. Sliding motility may represent a strategy for nutrient-deprived cells to colonize surfaces in natural environments, such as plant roots, and the media described here may be useful in investigations of this growth phenotype.


Subject(s)
Bacillus subtilis/physiology , Culture Media , Flagella/physiology , Ion Transport , Microscopy, Confocal , Movement , Mutation , Potassium/metabolism , Potassium Chloride/pharmacology
8.
J Bacteriol ; 187(24): 8462-9, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16321950

ABSTRACT

Undomesticated strains of Bacillus subtilis exhibit extensive colony spreading on certain soft agarose media: first the formation of dendritic clusters of cells, followed by spreading (pellicle-like) growth to cover the entire surface. These phases of colonization are dependent on the level of potassium ion (K(+)) but independent of flagella, as verified with a mutant with a hag gene replacement; this latter finding highlights the importance of sliding motility in colony spreading. Exploring the K(+) requirement, directed mutagenesis of the higher-affinity K(+) transporter KtrAB, but not the lower-affinity transporter KtrCD, was found to inhibit surface colonization unless sufficient KCl was added. To identify other genes involved in K(+)-dependent colony spreading, transposon insertion mutants in wild-type strain 3610 were screened. Disruption of genes for pyrimidine (pyrB) or purine (purD, purF, purH, purL, purM) biosynthetic pathways abolished the K(+)-dependent spreading phase. Consistent with a requirement for functional nucleic acid biosynthesis, disruption of purine synthesis with the folic acid antagonist sulfamethoxazole also inhibited spreading. Other transposon insertions disrupted acetoin biosynthesis (the alsS gene), acidifying the growth medium, glutamine synthetase (the glnA gene), and two surfactin biosynthetic genes (srfAA, srfAB). This work identified four classes of surface colonization mutants with defective (i) potassium transport, (ii) surfactin formation, (iii) growth rate or yield, or (iv) pH control. Overall, the ability of B. subtilis to colonize surfaces by spreading is highly dependent on balanced nucleotide biosynthesis and nutrient assimilation, which require sufficient K(+) ions, as well as growth conditions that promote sliding motility.


Subject(s)
Bacillus subtilis/genetics , Bacillus subtilis/physiology , Morphogenesis/genetics , Potassium/metabolism , Acetoin/metabolism , Anti-Bacterial Agents/pharmacology , Aspartate Carbamoyltransferase/genetics , Bacillus subtilis/cytology , Bacillus subtilis/growth & development , Bacterial Proteins/genetics , Bacterial Proteins/physiology , Carbon-Nitrogen Ligases with Glutamine as Amide-N-Donor/genetics , Cation Transport Proteins/genetics , Cation Transport Proteins/physiology , Culture Media/chemistry , DNA Transposable Elements , DNA, Bacterial/biosynthesis , Flagella/genetics , Glutamate-Ammonia Ligase/genetics , Membrane Proteins/genetics , Membrane Proteins/physiology , Movement , Mutagenesis, Insertional , Peptide Synthases/genetics , Sulfamethoxazole/pharmacology
9.
Environ Sci Technol ; 39(14): 5390-7, 2005 Jul 15.
Article in English | MEDLINE | ID: mdl-16082971

ABSTRACT

We have used a newly developed proton-transfer ion-trap mass spectrometry (PIT-MS) instrument for online trace gas analysis of volatile organic compounds (VOCs) during the 2004 New England Air Quality Study-Intercontinental Transport and Chemical Transformation study. The PIT-MS instrument uses proton-transfer reactions with H3O+ ions to ionize VOCs, similarto a PTR-MS (proton-transfer reaction mass spectrometry) instrument but uses an ion trap mass spectrometer to analyze the product ions. The advantages of an ion trap are the improved identification of VOCs and a near 100% duty cycle. During the experiment, the PIT-MS instrument had a detection limit between 0.05 and 0.3 pbbv (S/N = 3 (signal-to-noise ratio)) for 2-min integration time for most tested VOCs. PIT-MS was used for ambient air measurements onboard a research ship and agreed well with a gas chromatography mass spectrometer). The comparison included oxygenated VOCs, aromatic compounds, and others such as isoprene, monoterpenes, acetonitrile, and dimethyl sulfide. Automated collision-induced dissociation measurements were used to determine the contributions of acetone and propanal to the measured signal at 59 amu; both species are detected at this mass and are thus indistinguishable in conventional PTR-MS.


Subject(s)
Air Pollutants/analysis , Environmental Monitoring/methods , Internet , Mass Spectrometry/methods , Air Movements , Automation , New England , Organic Chemicals/analysis , Volatilization
10.
Syst Appl Microbiol ; 27(3): 372-9, 2004 May.
Article in English | MEDLINE | ID: mdl-15214643

ABSTRACT

A novel method was developed to isolate pure cultures of wild-type Bacillus subtilis and related species from plant roots, even roots washed free of adhering soil. The method uses casein digest-mannitol agarose (CM) media that promote rapid dendritic growth (low K+ ion) or profuse surface film formation (high K+ ion) of Bacillus species at 40 degrees C. Inoculation from the tips of surface growth on agarose leads to self-purification and streaking on CM agar plates (hard agar and high K+) leads to characteristic colony morphology. Phenotypic and 16S rDNA analysis revealed that most root isolates obtained by this method are spore-forming Bacillus species, with enrichment for B. subtilis and its close relatives. Of particular interest is the finding that the majority of these Bacillus isolates and the B. subtilis Marburg strain also form adhering biofilms on inert surfaces. Thus the methods presented may be useful in isolation of biofilm-forming Bacillus and investigation of their role on plant roots.


Subject(s)
Bacillus subtilis/classification , Bacillus subtilis/isolation & purification , Bacteriological Techniques , Biofilms/growth & development , Plant Roots/microbiology , Bacillus subtilis/growth & development , Bacterial Adhesion , Bacterial Typing Techniques , Caseins/metabolism , Culture Media/chemistry , DNA, Bacterial/chemistry , DNA, Bacterial/isolation & purification , DNA, Ribosomal/chemistry , DNA, Ribosomal/isolation & purification , Genes, rRNA , Mannitol/metabolism , Molecular Sequence Data , Phenotype , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Soil Microbiology , Spores, Bacterial/cytology , Spores, Bacterial/growth & development , Temperature
11.
Plant Physiol ; 135(1): 47-58, 2004 May.
Article in English | MEDLINE | ID: mdl-15141066

ABSTRACT

Plant roots release about 5% to 20% of all photosynthetically-fixed carbon, and as a result create a carbon-rich environment for numerous rhizosphere organisms, including plant pathogens and symbiotic microbes. Although some characterization of root exudates has been achieved, especially of secondary metabolites and proteins, much less is known about volatile organic compounds (VOCs) released by roots. In this communication, we describe a novel approach to exploring these rhizosphere VOCs and their induction by biotic stresses. The VOC formation of Arabidopsis roots was analyzed using proton-transfer-reaction mass spectrometry (PTR-MS), a new technology that allows rapid and real time analysis of most biogenic VOCs without preconcentration or chromatography. Our studies revealed that the major VOCs released and identified by both PTR-MS and gas chromatography-mass spectrometry were either simple metabolites, ethanol, acetaldehyde, acetic acid, ethyl acetate, 2-butanone, 2,3,-butanedione, and acetone, or the monoterpene, 1,8-cineole. Some VOCs were found to be produced constitutively regardless of the treatment; other VOCs were induced specifically as a result of different compatible and noncompatible interactions between microbes and insects and Arabidopsis roots. Compatible interactions of Pseudomonas syringae DC3000 and Diuraphis noxia with Arabidopsis roots resulted in the rapid release of 1,8-cineole, a monoterpene that has not been previously reported in Arabidopsis. Mechanical injuries to Arabidopsis roots did not produce 1,8-cineole nor any C6 wound-VOCs; compatible interactions between Arabidopsis roots and Diuraphis noxia did not produce any wound compounds. This suggests that Arabidopsis roots respond to wounding differently from above-ground plant organs. Trials with incompatible interactions did not reveal a set of compounds that was significantly different compared to the noninfected roots. The PTR-MS method may open the way for functional root VOC analysis that will complement genomic investigations in Arabidopsis.


Subject(s)
Arabidopsis/metabolism , Mass Spectrometry/methods , Organic Chemicals/metabolism , Plant Roots/metabolism , Animals , Arabidopsis/microbiology , Arabidopsis/parasitology , Bacteria/growth & development , Computer Systems , Cyclohexanols/metabolism , Eucalyptol , Fungi/growth & development , Gas Chromatography-Mass Spectrometry , Immunity, Innate , Insecta/growth & development , Mass Spectrometry/instrumentation , Monoterpenes/metabolism , Plant Diseases/microbiology , Plant Diseases/parasitology , Plant Roots/microbiology , Plant Roots/parasitology , Protons , Stress, Mechanical , Volatilization
12.
Plant Physiol ; 134(1): 320-31, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14701912

ABSTRACT

Pseudomonas aeruginosa is an opportunistic human pathogen capable of forming a biofilm under physiological conditions that contributes to its persistence despite long-term treatment with antibiotics. Here, we report that pathogenic P. aeruginosa strains PAO1 and PA14 are capable of infecting the roots of Arabidopsis and sweet basil (Ocimum basilicum), in vitro and in the soil, and are capable of causing plant mortality 7 d postinoculation. Before plant mortality, PAO1 and PA14 colonize the roots of Arabidopsis and sweet basil and form a biofilm as observed by scanning electron microscopy, phase contrast microscopy, and confocal scanning laser microscopy. Upon P. aeruginosa infection, sweet basil roots secrete rosmarinic acid (RA), a multifunctional caffeic acid ester that exhibits in vitro antibacterial activity against planktonic cells of both P. aeruginosa strains with a minimum inhibitory concentration of 3 microg mL(-1). However, in our studies RA did not attain minimum inhibitory concentration levels in sweet basil's root exudates before P. aeruginosa formed a biofilm that resisted the microbicidal effects of RA and ultimately caused plant mortality. We further demonstrated that P. aeruginosa biofilms were resistant to RA treatment under in vivo and in vitro conditions. In contrast, induction of RA secretion by sweet basil roots and exogenous supplementation of Arabidopsis root exudates with RA before infection conferred resistance to P. aeruginosa. Under the latter conditions, confocal scanning laser microscopy revealed large clusters of dead P. aeruginosa on the root surface of Arabidopsis and sweet basil, and biofilm formation was not observed. Studies with quorum-sensing mutants PAO210 (DeltarhlI), PAO214 (DeltalasI), and PAO216 (DeltalasI DeltarhlI) demonstrated that all of the strains were pathogenic to Arabidopsis, which does not naturally secrete RA as a root exudate. However, PAO214 was the only pathogenic strain toward sweet basil, and PAO214 biofilm appeared comparable with biofilms formed by wild-type strains of P. aeruginosa. Our results collectively suggest that upon root colonization, P. aeruginosa forms a biofilm that confers resistance against root-secreted antibiotics.


Subject(s)
Plant Roots/microbiology , Pseudomonas aeruginosa/pathogenicity , Anti-Bacterial Agents/pharmacology , Arabidopsis/microbiology , Biofilms/drug effects , Biofilms/growth & development , Cinnamates/metabolism , Cinnamates/pharmacology , Depsides , Mutation , Ocimum basilicum/microbiology , Plant Diseases/microbiology , Pseudomonas aeruginosa/drug effects , Pseudomonas aeruginosa/genetics , Pseudomonas aeruginosa/physiology , Virulence , Rosmarinic Acid
13.
Plant Physiol ; 134(1): 307-19, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14684838

ABSTRACT

Relatively little is known about the exact mechanisms used by Bacillus subtilis in its behavior as a biocontrol agent on plants. Here, we report the development of a sensitive plant infection model demonstrating that the bacterial pathogen Pseudomonas syringae pv tomato DC3000 is capable of infecting Arabidopsis roots both in vitro and in soil. Using this infection model, we demonstrated the biocontrol ability of a wild-type B. subtilis strain 6051 against P. syringae. Arabidopsis root surfaces treated with B. subtilis were analyzed with confocal scanning laser microscopy to reveal a three-dimensional B. subtilis biofilm. It is known that formation of biofilms by B. subtilis is a complex process that includes secretion of surfactin, a lipopeptide antimicrobial agent. To determine the role of surfactin in biocontrol by B. subtilis, we tested a mutant strain, M1, with a deletion in a surfactin synthase gene and, thus, deficient in surfactin production. B. subtilis M1 was ineffective as a biocontrol agent against P. syringae infectivity in Arabidopsis and also failed to form robust biofilms on either roots or inert surfaces. The antibacterial activity of surfactin against P. syringae was determined in both broth and agar cultures and also by live-dead staining methods. Although the minimum inhibitory concentrations determined were relatively high (25 microg mL(-1)), the levels of the lipopeptide in roots colonized by B. subtilis are likely to be sufficient to kill P. syringae. Our results collectively indicate that upon root colonization, B. subtilis 6051 forms a stable, extensive biofilm and secretes surfactin, which act together to protect plants against attack by pathogenic bacteria.


Subject(s)
Arabidopsis/microbiology , Bacillus subtilis/physiology , Peptides, Cyclic/biosynthesis , Pseudomonas syringae/pathogenicity , Agar , Bacillus subtilis/genetics , Bacterial Adhesion , Biofilms/growth & development , Lipopeptides , Models, Biological , Mutation , Peptides, Cyclic/genetics , Pest Control, Biological , Plant Diseases/microbiology , Plant Roots/microbiology , Pseudomonas syringae/physiology
15.
J Bacteriol ; 185(18): 5627-31, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12949115

ABSTRACT

Motility on surfaces is an important mechanism for bacterial colonization of new environments. In this report, we describe detection of rapid surface motility in the wild-type Bacillus subtilis Marburg strain, but not in several B. subtilis 168 derivatives. Motility involved formation of rapidly spreading dendritic structures, followed by profuse surface colonies if sufficient potassium ion was present. Potassium ion stimulated surfactin secretion, and the role of surfactin in surface motility was confirmed by deletion of a surfactin synthase gene. Significantly, this motility was independent of flagella. These results demonstrate that wild-type B. subtilis strains can use both swimming and sliding-type mechanisms to move across surfaces.


Subject(s)
Bacillus subtilis/physiology , Extracellular Matrix/metabolism , Peptides, Cyclic/physiology , Potassium/metabolism , Bacillus subtilis/cytology , Culture Media , Flagella/genetics , Lipopeptides , Movement , Mutation
16.
Biotechnol Prog ; 19(4): 1355-64, 2003.
Article in English | MEDLINE | ID: mdl-12892502

ABSTRACT

Chemical-ionization mass spectrometry (CIMS) using flow reactors is an emerging method for on-line monitoring of trace concentrations of organic compounds in the gas phase. In this study, a flow-reactor CIMS instrument, employing the H(3)O(+) cation as the ionizing reagent, was used to simultaneously monitor several volatile metabolic products as they are released into the headspace during bacterial growth in a bioreactor. Production of acetaldehyde, ethanol, acetone, butanol, acetoin, diacetyl, and isoprene by Bacillus subtilis is reported. Ion signal intensities were related to solution-phase concentrations using empirical calibrations and, in the case of isoprene, were compared with simultaneous gas chromatography measurements. Identification of volatile and semivolatile metabolites is discussed. Flow-reactor CIMS techniques should be useful for bioprocess monitoring applications because of their ability to sensitively and simultaneously monitor many volatile metabolites on-line.


Subject(s)
Acetoin/metabolism , Bacillus subtilis/growth & development , Bacillus subtilis/metabolism , Bioreactors/microbiology , Butadienes/metabolism , Cell Culture Techniques/instrumentation , Flow Injection Analysis/instrumentation , Hemiterpenes/metabolism , Mass Spectrometry/instrumentation , Pentanes/metabolism , Cell Culture Techniques/methods , Equipment Design , Equipment Failure Analysis , Feasibility Studies , Flow Injection Analysis/methods , Mass Spectrometry/methods , Online Systems , Reproducibility of Results , Sensitivity and Specificity
17.
Environ Sci Technol ; 37(11): 2494-501, 2003 Jun 01.
Article in English | MEDLINE | ID: mdl-12831035

ABSTRACT

Proton-transfer-reaction mass spectrometry (PTR-MS) has emerged as a useful tool to study volatile organic compounds (VOCs) in the atmosphere. In PTR-MS, proton-transfer reactions with H30+ ions are used to ionize and measure VOCs in air with a high sensitivity and fast time response. Only the masses of the ionized VOCs and their fragments, if any, are determined, and these product ions are not unique indicators of VOC identities. Here, a combination of gas chromatography and PTR-MS (GC-PTR-MS) is used to validate the measurements by PTR-MS of a number of common atmospheric VOCs. We have analyzed 75 VOCs contained in standard mixtures by GC-PTR-MS, which allowed detected masses to be unambiguously related to a specific compound. The calibration factors for PTR-MS and GC-PTR-MS were compared and showed that the loss of VOCs in the sample acquisition and GC system is small. GC-PTR-MS analyses of 56 air samples from an urban site were used to address the specificity of PTR-MS in complex air masses. It is demonstrated that the ions associated with methanol, acetonitrile, acetaldehyde, acetone, benzene, toluene, and higher aromatic VOCs are free from significant interference. A quantitative intercomparison between PTR-MS and GC-PTR-MS measurements of the aforementioned VOCs was performed and shows that they are accurately measured by PTR-MS.


Subject(s)
Air Pollutants/analysis , Environmental Monitoring/methods , Gas Chromatography-Mass Spectrometry/methods , Organic Chemicals/analysis , Protons , Volatilization
18.
Nature ; 421(6920): 256-9, 2003 Jan 16.
Article in English | MEDLINE | ID: mdl-12529640

ABSTRACT

The emission of isoprene from the leaves of forest trees is a fundamental component of biosphere-atmosphere interactions, controlling many aspects of photochemistry in the lower atmosphere. As almost all commercial agriforest species emit high levels of isoprene, proliferation of agriforest plantations has significant potential to increase regional ozone pollution and enhance the lifetime of methane, an important determinant of global climate. Here we show that growth of an intact Populus deltoides plantation under increased CO2 (800 micromol x mol(-1) and 1,200 micromol x mol(-1)) reduced ecosystem isoprene production by 21% and 41%, while above-ground biomass accumulation was enhanced by 60% and 82%, respectively. Exposure to increased CO2 significantly reduced the cellular content of dimethylallyl diphosphate, the substrate for isoprene synthesis, in both leaves and leaf protoplasts. We identify intracellular metabolic competition for phosphoenolpyruvate as a possible control point in explaining the suppression of isoprene emission under increased CO2. Our results highlight the potential for uncoupling isoprene emission from biomass accumulation in an agriforest species, and show that negative air-quality effects of proliferating agriforests may be offset by increases in CO2.


Subject(s)
Butadienes/metabolism , Carbon Dioxide/metabolism , Ecosystem , Hemiterpenes , Pentanes , Populus/growth & development , Populus/metabolism , Trees/growth & development , Trees/metabolism , Atmosphere/chemistry , Biomass , Carbon Dioxide/pharmacology , Photosynthesis/drug effects , Plant Leaves/drug effects , Plant Leaves/metabolism , Populus/drug effects , Trees/drug effects
19.
Analyst ; 127(11): 1446-9, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12475032

ABSTRACT

A new method to simultaneously detect cyanide and carbonyl compounds arising from cyanogenic glycosides in plants is described. A portable gas chromatograph.housing two detectors using a single carrier gas is employed to measure the carbonyl compounds (photoionization detector) and cyanide as its cyanogen chloride derivative (electron capture detector) from the headspace of a plant sample. This method affords in-field, rapid screening of plants to determine cyanogenicity. Good agreement was seen between this method for cyanide determination and two traditional field cyanide test kits. Detection of both the cyanide and the carbonyl compound(s) allows for confirmation of the presence of cyanogenic glycosides and eliminates the problem of false positives often seen in traditional cyanide test kits. Gas phase limits of detection for cyanide, acetone, butanone, and benzaldehyde were 69, 41, 105, and 0.39 parts per billion by volume (ppbv), respectively, allowing sensitive detection of cyanogenic glycoside breakdown products. The method's utility for screening cyanogenic plants is demonstrated, and it should be useful for screening cyanogenic foodstuffs to determine suitability for consumption.


Subject(s)
Cyanides/analysis , Food Analysis/methods , Nitriles/analysis , Plants, Edible/chemistry , Carbonyl Cyanide m-Chlorophenyl Hydrazone/analysis , Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone/analysis , Chromatography, Gas/instrumentation , Chromatography, Gas/methods , Food Analysis/instrumentation , Photochemistry/methods , Sensitivity and Specificity
20.
Biotechnol Prog ; 18(5): 1109-15, 2002.
Article in English | MEDLINE | ID: mdl-12363365

ABSTRACT

Isoprene (2-methyl-1,3-butadiene) is a volatile hydrocarbon of uncertain function in Bacillus subtilis, and we hypothesized that it is an overflow metabolite produced during excess carbon utilization. Here we tested this idea for phase 2 of isoprene release, a phase that occurs during extracellular acetoin accumulation and its reassimilation. Phase 2 isoprene formation could be disrupted in three different ways, all related to acetoin metabolism. Disruption of a gene essential for acetoin biosynthesis (acetolactic acid synthase, alsS) blocked acetoin formation and led to cessation of phase 2 isoprene formation as well as a variety of pleiotropic effects related to loss of pH control. Growth of the alsS mutant with external pH control reversed most of these effects. Disruption of acetoin catabolism (acetoin dehydrogenase, acoA), also eliminated phase 2 isoprene formation and caused cells to transition directly from phase 1 to phase 3; the latter is attributed to amino acid catabolism. A third alteration of acetoin metabolism was detected in the widely used strain 168 (trpC2) but not in strain MS175, a trpC mutant constructed in the Marburg strain genetic background. Strain 168 exhibited slow acetoin assimilation compared to that of MS175 or the parental strain, with little or no isoprene formation during this growth phase. These findings support the idea that isoprene release occurs primarily when the rate of carbon catabolism exceeds anabolism and that this volatile hydrocarbon is a product of overflow metabolism when precursors are not required for higher isoprenoid biosynthesis. It is suggested that isoprene release might serve as a useful barometer of the rise and fall of central carbon fluxes during the growth of Bacillus strains in industrial bioreactors.


Subject(s)
Acetoin/metabolism , Bacillus subtilis/genetics , Bacillus subtilis/metabolism , Bioreactors , Butadienes/metabolism , Carbon/metabolism , Hemiterpenes , Pentanes , Bacillus subtilis/classification , Biomarkers , Cell Line , Evolution, Molecular , Gene Deletion , Gene Expression Regulation, Bacterial , Gene Silencing , Glucose/metabolism , Hydrogen-Ion Concentration , Lactic Acid/biosynthesis , Oxygen/metabolism , Recombination, Genetic , Sensitivity and Specificity , Species Specificity
SELECTION OF CITATIONS
SEARCH DETAIL