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J Infect Dis ; 190(11): 1913-8, 2004 Dec 01.
Article in English | MEDLINE | ID: mdl-15529254

ABSTRACT

This study, conducted during 2001-2003, undertook the screening of patients with acute infectious respiratory-tract disease. A random selection of positive specimens was used for sequencing studies of the human metapneumovirus (hMPV) nucleoprotein gene and the phosphoprotein (P) gene. Australian and international sequences were compared, and a global classification scheme was developed. The hMPV P gene was an ideal molecular target for the detection and genotyping of hMPV. The region contained conserved sequences for reverse-transcriptase-polymerase chain-reaction primers and adequate variability to permit the accurate genotyping of the virus into 2 main lineages and 4 sublineages. Establishing viral identity is essential for the linking of genotype and disease severity.


Subject(s)
Genes, Viral , Metapneumovirus/genetics , Paramyxoviridae Infections/epidemiology , Phosphoproteins/genetics , Respiratory Tract Infections/epidemiology , Acute Disease , Australia/epidemiology , Child , Family Practice , Female , Genotype , Hospitals , Humans , Male , Metapneumovirus/classification , Molecular Epidemiology , Molecular Sequence Data , Nucleoproteins/genetics , Phylogeny , Respiratory Tract Infections/virology , Sequence Alignment
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